mRNA_17303 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|132460
Unique NamemRNA_17303
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|132460 vs. uniprot
Match: A0A835Z9C9_9STRA (AMP-binding domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9C9_9STRA)

HSP 1 Score: 238 bits (608), Expect = 1.540e-79
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1
Query:    1 RSVLEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADHLTGPLQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA 372
            RSVLEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADHLTGPLQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA
Sbjct:    1 RSVLEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADHLTGPLQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA 124          
BLAST of jgi.p|Trimin1|132460 vs. uniprot
Match: A0A6A5ALQ8_9STRA (AMP-binding domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ALQ8_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.270e-34
Identity = 70/130 (53.85%), Postives = 88/130 (67.69%), Query Frame = 1
Query:    4 SVLEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADH-LTGP------LQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA 372
            +VL  LDHWA   P K +F F+DD G  T + T+  +Q+ S ++A   LT P      L L KGD  LLVYPP LDFIVAFL CL AG+VAVPVYPPDP KLR+D+  F  V +++GA VALT+S Y++A
Sbjct:    7 TVLGRLDHWATVQPKKNLFAFVDDNGQVTDSVTYDDVQSRSSNLAKWMLTSPSVSSKGLGLSKGDIVLLVYPPGLDFIVAFLACLRAGVVAVPVYPPDPRKLRKDIAMFTTVCSNAGAKVALTNSTYNYA 136          
BLAST of jgi.p|Trimin1|132460 vs. uniprot
Match: A0A7R9UP12_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UP12_DIALT)

HSP 1 Score: 127 bits (319), Expect = 1.320e-32
Identity = 65/121 (53.72%), Postives = 87/121 (71.90%), Query Frame = 1
Query:   10 LEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADHLTGPLQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA 372
            L+AL  W+A  P++ V+ F+ D+G      ++  L AAS +VA HL    ++  G RALLVYPP LDFIVA+LGCL AG++AVP +PP+P++L +DLV FAA  ASSGA VALT++ YSHA
Sbjct:   37 LDALARWSAEQPARPVYTFVGDRGEQLAQLSYAQLDAASDNVARHLRFVAKVEVGARALLVYPPGLDFIVAYLGCLRAGVIAVPAFPPEPTRLSKDLVHFAATQASSGARVALTNTLYSHA 157          
BLAST of jgi.p|Trimin1|132460 vs. uniprot
Match: A0A7R9UPP6_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UPP6_DIALT)

HSP 1 Score: 127 bits (319), Expect = 1.020e-31
Identity = 65/121 (53.72%), Postives = 87/121 (71.90%), Query Frame = 1
Query:   10 LEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADHLTGPLQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA 372
            L+AL  W+A  P++ V+ F+ D+G      ++  L AAS +VA HL    ++  G RALLVYPP LDFIVA+LGCL AG++AVP +PP+P++L +DLV FAA  ASSGA VALT++ YSHA
Sbjct:   37 LDALARWSAEQPARPVYTFVGDRGEQLAQLSYAQLDAASDNVARHLRFVAKVEVGARALLVYPPGLDFIVAYLGCLRAGVIAVPAFPPEPTRLSKDLVHFAATQASSGARVALTNTLYSHA 157          
BLAST of jgi.p|Trimin1|132460 vs. uniprot
Match: A0A8J6C852_DIALT (Carrier domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C852_DIALT)

HSP 1 Score: 127 bits (319), Expect = 1.300e-31
Identity = 65/121 (53.72%), Postives = 87/121 (71.90%), Query Frame = 1
Query:   10 LEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADHLTGPLQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA 372
            L+AL  W+A  P++ V+ F+ D+G      ++  L AAS +VA HL    ++  G RALLVYPP LDFIVA+LGCL AG++AVP +PP+P++L +DLV FAA  ASSGA VALT++ YSHA
Sbjct:   23 LDALARWSAEQPARPVYTFVGDRGEQLAQLSYAQLDAASDNVARHLRFVAKVEVGARALLVYPPGLDFIVAYLGCLRAGVIAVPAFPPEPTRLSKDLVHFAATQASSGARVALTNTLYSHA 143          
BLAST of jgi.p|Trimin1|132460 vs. uniprot
Match: A0A7S1C448_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C448_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.760e-31
Identity = 66/125 (52.80%), Postives = 86/125 (68.80%), Query Frame = 1
Query:    1 RSVLEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADHLTGP----LQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAY 363
            R +L AL HWA+  P K +F +L D G  T   T+  ++A +R +A H+       L + +GDR LLVYPPSLDFIVAFL CL AG+VAVPVYPPDP +L++++  FA++ ASSGA VALTS  Y
Sbjct:   17 RQLLPALRHWASTQPDKVLFTYLGDDGEETRRLTYGDVEAQTRRLAQHILSNTAEGLGVGQGDRVLLVYPPSLDFIVAFLACLRAGVVAVPVYPPDPRRLKKNMYMFASIQASSGARVALTSKQY 141          
BLAST of jgi.p|Trimin1|132460 vs. uniprot
Match: W4FD50_9STRA (Carrier domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FD50_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.340e-31
Identity = 70/130 (53.85%), Postives = 88/130 (67.69%), Query Frame = 1
Query:    4 SVLEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADH-LTGP------LQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA 372
            +VL  LDHWA   P K +F F+DD G  T + T+  +Q+ S ++A   LT P      L L KGD  LLVYPP LDFIVAFL CL AG+VAVPVYPPDP KLR+D+  F  V +++GA VALT+S Y++A
Sbjct:    7 TVLGRLDHWATVQPKKNLFAFVDDNGQVTDSVTYDDVQSRSSNLAKWMLTSPSVSSKGLGLSKGDIVLLVYPPGLDFIVAFLACLRAGVVAVPVYPPDPRKLRKDIAMFTTVCSNAGAKVALTNSTYNYA 136          
BLAST of jgi.p|Trimin1|132460 vs. uniprot
Match: A0A024U0U6_9STRA (Carrier domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U0U6_9STRA)

HSP 1 Score: 125 bits (315), Expect = 4.270e-31
Identity = 70/130 (53.85%), Postives = 88/130 (67.69%), Query Frame = 1
Query:    4 SVLEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADH-LTGP------LQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA 372
            +VL  LDHWAA  P K +F F+DD G  T +  +  +   S ++A   LT P      L L +GD  LLVYPP LDFIVAFL CL AG+VAVPVYPPDP KLR+D+V F  V ++SGA +ALT+SAY++A
Sbjct:    4 TVLGRLDHWAAHQPKKNLFAFVDDNGRVTDSLLYEDVHTRSANLAKWMLTSPSVSSQGLGLSRGDIVLLVYPPGLDFIVAFLACLRAGVVAVPVYPPDPRKLRKDIVMFTTVCSNSGAKIALTNSAYNYA 133          
BLAST of jgi.p|Trimin1|132460 vs. uniprot
Match: A0A836C8Y2_9STRA (AMP-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Y2_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.630e-30
Identity = 60/106 (56.60%), Postives = 76/106 (71.70%), Query Frame = 1
Query:   55 VFIFLDDQGNSTCTHTFLSLQAASRSVADHLTGPLQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA 372
            ++ +LDD G  T   T+  + AAS  +A  L G  +L+ GDRALLVYPPSL F+VAF+ CL AG++AVPVYPPDP KL++D+ AFA  A  SGA +ALTSS Y HA
Sbjct:    4 LWTYLDDDGAETMGLTYAEVDAASADLAAALLGEYKLQVGDRALLVYPPSLHFVVAFMACLRAGVIAVPVYPPDPRKLQKDISAFARAADDSGACLALTSSLYDHA 109          
BLAST of jgi.p|Trimin1|132460 vs. uniprot
Match: A0A6G0XHZ7_9STRA (Carrier domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHZ7_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.790e-30
Identity = 66/131 (50.38%), Postives = 90/131 (68.70%), Query Frame = 1
Query:    1 RSVLEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADHL-TGP------LQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA 372
            +++LE LDHW +  P K ++ F+DD G    + T+  + A S ++A  L T P      L L +G+R LLVYPP LDFIV FL CL AG+VAVPVYPPDP KLR+D+V FA V +++GA VALT+ +Y++A
Sbjct:   17 KTLLERLDHWTSHHPDKNLYEFVDDNGRVVDSLTYKDVHARSSNLAKWLVTSPNVSSKGLGLARGERVLLVYPPGLDFIVTFLACLRAGVVAVPVYPPDPRKLRKDIVMFATVCSNTGAKVALTNKSYNYA 147          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132460 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z9C9_9STRA1.540e-79100.00AMP-binding domain-containing protein (Fragment) n... [more]
A0A6A5ALQ8_9STRA3.270e-3453.85AMP-binding domain-containing protein n=1 Tax=Apha... [more]
A0A7R9UP12_DIALT1.320e-3253.72Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A7R9UPP6_DIALT1.020e-3153.72Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A8J6C852_DIALT1.300e-3153.72Carrier domain-containing protein n=1 Tax=Diacrone... [more]
A0A7S1C448_9STRA1.760e-3152.80Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
W4FD50_9STRA2.340e-3153.85Carrier domain-containing protein n=2 Tax=Aphanomy... [more]
A0A024U0U6_9STRA4.270e-3153.85Carrier domain-containing protein n=1 Tax=Aphanomy... [more]
A0A836C8Y2_9STRA1.630e-3056.60AMP-binding domain-containing protein n=1 Tax=Trib... [more]
A0A6G0XHZ7_9STRA2.790e-3050.38Carrier domain-containing protein n=1 Tax=Aphanomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_204contigContig_204:194072..194443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|132460|gw1.204.11.1
GOsGO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009273,GO:0009987,GO:0042546,GO:0044085,GO:0044238,GO:0071554,GO:0071704,GO:0071766,GO:0071840,GO:1901576
Descriptionfatty acid biosynthetic process
COG categoryIQ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0318@1|root,KOG3628@2759|Eukaryota
Evalue7e-32
Seed ortholog157072.XP_008871071.1
Hectar predicted targeting categoryother localisation
TranscriptId132782
TrackFilteredModels1
ProteinId132460
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132460gene_17303Tribonema minus UTEX_B_3156 geneContig_204 194072..194443 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17303_1exon_17303_1Tribonema minus UTEX_B_3156 exonContig_204 194072..194443 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17303CDS_17303Tribonema minus UTEX_B_3156 CDSContig_204 194072..194443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132460Trimin1|132460|gw1.204.11.1Tribonema minus UTEX_B_3156 polypeptideContig_204 194072..194443 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17303 ID=mRNA_17303|Name=jgi.p|Trimin1|132460|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=372bp|location=Sequence derived from alignment at Contig_204:194072..194443+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGATCAGTGCTGGAGGCCCTGGACCACTGGGCTGCTGCCACACCCTCGAA
AGCTGTCTTCATTTTTCTGGATGATCAGGGCAATAGCACCTGTACGCACA
CCTTCCTCAGTCTGCAGGCTGCTTCAAGATCCGTCGCTGATCACCTGACT
GGCCCACTGCAGTTGCGCAAAGGAGACAGGGCTCTGCTGGTCTACCCTCC
GTCACTTGACTTCATCGTTGCATTCCTGGGCTGCCTTGCGGCCGGCATCG
TGGCAGTGCCTGTGTACCCTCCAGATCCGAGCAAGCTCCGGCAAGATCTT
GTCGCCTTTGCCGCCGTGGCTGCCAGCAGCGGAGCATCTGTGGCGCTCAC
CAGTTCTGCCTACAGCCATGCT
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protein sequence of jgi.p|Trimin1|132460

>Trimin1|132460|gw1.204.11.1 ID=Trimin1|132460|gw1.204.11.1|Name=jgi.p|Trimin1|132460|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=124bp
RSVLEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADHLT
GPLQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDL
VAFAAVAASSGASVALTSSAYSHA
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mRNA from alignment at Contig_204:194072..194443+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17303 ID=mRNA_17303|Name=jgi.p|Trimin1|132460|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=372bp|location=Sequence derived from alignment at Contig_204:194072..194443+ (Tribonema minus UTEX_B_3156 )
AGATCAGTGCTGGAGGCCCTGGACCACTGGGCTGCTGCCACACCCTCGAA AGCTGTCTTCATTTTTCTGGATGATCAGGGCAATAGCACCTGTACGCACA CCTTCCTCAGTCTGCAGGCTGCTTCAAGATCCGTCGCTGATCACCTGACT GGCCCACTGCAGTTGCGCAAAGGAGACAGGGCTCTGCTGGTCTACCCTCC GTCACTTGACTTCATCGTTGCATTCCTGGGCTGCCTTGCGGCCGGCATCG TGGCAGTGCCTGTGTACCCTCCAGATCCGAGCAAGCTCCGGCAAGATCTT GTCGCCTTTGCCGCCGTGGCTGCCAGCAGCGGAGCATCTGTGGCGCTCAC CAGTTCTGCCTACAGCCATGCT
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Coding sequence (CDS) from alignment at Contig_204:194072..194443+

>mRNA_17303 ID=mRNA_17303|Name=jgi.p|Trimin1|132460|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=372bp|location=Sequence derived from alignment at Contig_204:194072..194443+ (Tribonema minus UTEX_B_3156 )
AGATCAGTGCTGGAGGCCCTGGACCACTGGGCTGCTGCCACACCCTCGAA
AGCTGTCTTCATTTTTCTGGATGATCAGGGCAATAGCACCTGTACGCACA
CCTTCCTCAGTCTGCAGGCTGCTTCAAGATCCGTCGCTGATCACCTGACT
GGCCCACTGCAGTTGCGCAAAGGAGACAGGGCTCTGCTGGTCTACCCTCC
GTCACTTGACTTCATCGTTGCATTCCTGGGCTGCCTTGCGGCCGGCATCG
TGGCAGTGCCTGTGTACCCTCCAGATCCGAGCAAGCTCCGGCAAGATCTT
GTCGCCTTTGCCGCCGTGGCTGCCAGCAGCGGAGCATCTGTGGCGCTCAC
CAGTTCTGCCTACAGCCATGCT
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