mRNA_17303 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|132460 vs. uniprot
Match: A0A835Z9C9_9STRA (AMP-binding domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9C9_9STRA) HSP 1 Score: 238 bits (608), Expect = 1.540e-79 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 Query: 1 RSVLEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADHLTGPLQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA 372 RSVLEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADHLTGPLQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA Sbjct: 1 RSVLEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADHLTGPLQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA 124
BLAST of jgi.p|Trimin1|132460 vs. uniprot
Match: A0A6A5ALQ8_9STRA (AMP-binding domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ALQ8_9STRA) HSP 1 Score: 126 bits (317), Expect = 3.270e-34 Identity = 70/130 (53.85%), Postives = 88/130 (67.69%), Query Frame = 1 Query: 4 SVLEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADH-LTGP------LQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA 372 +VL LDHWA P K +F F+DD G T + T+ +Q+ S ++A LT P L L KGD LLVYPP LDFIVAFL CL AG+VAVPVYPPDP KLR+D+ F V +++GA VALT+S Y++A Sbjct: 7 TVLGRLDHWATVQPKKNLFAFVDDNGQVTDSVTYDDVQSRSSNLAKWMLTSPSVSSKGLGLSKGDIVLLVYPPGLDFIVAFLACLRAGVVAVPVYPPDPRKLRKDIAMFTTVCSNAGAKVALTNSTYNYA 136
BLAST of jgi.p|Trimin1|132460 vs. uniprot
Match: A0A7R9UP12_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UP12_DIALT) HSP 1 Score: 127 bits (319), Expect = 1.320e-32 Identity = 65/121 (53.72%), Postives = 87/121 (71.90%), Query Frame = 1 Query: 10 LEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADHLTGPLQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA 372 L+AL W+A P++ V+ F+ D+G ++ L AAS +VA HL ++ G RALLVYPP LDFIVA+LGCL AG++AVP +PP+P++L +DLV FAA ASSGA VALT++ YSHA Sbjct: 37 LDALARWSAEQPARPVYTFVGDRGEQLAQLSYAQLDAASDNVARHLRFVAKVEVGARALLVYPPGLDFIVAYLGCLRAGVIAVPAFPPEPTRLSKDLVHFAATQASSGARVALTNTLYSHA 157
BLAST of jgi.p|Trimin1|132460 vs. uniprot
Match: A0A7R9UPP6_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UPP6_DIALT) HSP 1 Score: 127 bits (319), Expect = 1.020e-31 Identity = 65/121 (53.72%), Postives = 87/121 (71.90%), Query Frame = 1 Query: 10 LEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADHLTGPLQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA 372 L+AL W+A P++ V+ F+ D+G ++ L AAS +VA HL ++ G RALLVYPP LDFIVA+LGCL AG++AVP +PP+P++L +DLV FAA ASSGA VALT++ YSHA Sbjct: 37 LDALARWSAEQPARPVYTFVGDRGEQLAQLSYAQLDAASDNVARHLRFVAKVEVGARALLVYPPGLDFIVAYLGCLRAGVIAVPAFPPEPTRLSKDLVHFAATQASSGARVALTNTLYSHA 157
BLAST of jgi.p|Trimin1|132460 vs. uniprot
Match: A0A8J6C852_DIALT (Carrier domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C852_DIALT) HSP 1 Score: 127 bits (319), Expect = 1.300e-31 Identity = 65/121 (53.72%), Postives = 87/121 (71.90%), Query Frame = 1 Query: 10 LEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADHLTGPLQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA 372 L+AL W+A P++ V+ F+ D+G ++ L AAS +VA HL ++ G RALLVYPP LDFIVA+LGCL AG++AVP +PP+P++L +DLV FAA ASSGA VALT++ YSHA Sbjct: 23 LDALARWSAEQPARPVYTFVGDRGEQLAQLSYAQLDAASDNVARHLRFVAKVEVGARALLVYPPGLDFIVAYLGCLRAGVIAVPAFPPEPTRLSKDLVHFAATQASSGARVALTNTLYSHA 143
BLAST of jgi.p|Trimin1|132460 vs. uniprot
Match: A0A7S1C448_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C448_9STRA) HSP 1 Score: 127 bits (318), Expect = 1.760e-31 Identity = 66/125 (52.80%), Postives = 86/125 (68.80%), Query Frame = 1 Query: 1 RSVLEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADHLTGP----LQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAY 363 R +L AL HWA+ P K +F +L D G T T+ ++A +R +A H+ L + +GDR LLVYPPSLDFIVAFL CL AG+VAVPVYPPDP +L++++ FA++ ASSGA VALTS Y Sbjct: 17 RQLLPALRHWASTQPDKVLFTYLGDDGEETRRLTYGDVEAQTRRLAQHILSNTAEGLGVGQGDRVLLVYPPSLDFIVAFLACLRAGVVAVPVYPPDPRRLKKNMYMFASIQASSGARVALTSKQY 141
BLAST of jgi.p|Trimin1|132460 vs. uniprot
Match: W4FD50_9STRA (Carrier domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FD50_9STRA) HSP 1 Score: 126 bits (317), Expect = 2.340e-31 Identity = 70/130 (53.85%), Postives = 88/130 (67.69%), Query Frame = 1 Query: 4 SVLEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADH-LTGP------LQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA 372 +VL LDHWA P K +F F+DD G T + T+ +Q+ S ++A LT P L L KGD LLVYPP LDFIVAFL CL AG+VAVPVYPPDP KLR+D+ F V +++GA VALT+S Y++A Sbjct: 7 TVLGRLDHWATVQPKKNLFAFVDDNGQVTDSVTYDDVQSRSSNLAKWMLTSPSVSSKGLGLSKGDIVLLVYPPGLDFIVAFLACLRAGVVAVPVYPPDPRKLRKDIAMFTTVCSNAGAKVALTNSTYNYA 136
BLAST of jgi.p|Trimin1|132460 vs. uniprot
Match: A0A024U0U6_9STRA (Carrier domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U0U6_9STRA) HSP 1 Score: 125 bits (315), Expect = 4.270e-31 Identity = 70/130 (53.85%), Postives = 88/130 (67.69%), Query Frame = 1 Query: 4 SVLEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADH-LTGP------LQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA 372 +VL LDHWAA P K +F F+DD G T + + + S ++A LT P L L +GD LLVYPP LDFIVAFL CL AG+VAVPVYPPDP KLR+D+V F V ++SGA +ALT+SAY++A Sbjct: 4 TVLGRLDHWAAHQPKKNLFAFVDDNGRVTDSLLYEDVHTRSANLAKWMLTSPSVSSQGLGLSRGDIVLLVYPPGLDFIVAFLACLRAGVVAVPVYPPDPRKLRKDIVMFTTVCSNSGAKIALTNSAYNYA 133
BLAST of jgi.p|Trimin1|132460 vs. uniprot
Match: A0A836C8Y2_9STRA (AMP-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Y2_9STRA) HSP 1 Score: 116 bits (290), Expect = 1.630e-30 Identity = 60/106 (56.60%), Postives = 76/106 (71.70%), Query Frame = 1 Query: 55 VFIFLDDQGNSTCTHTFLSLQAASRSVADHLTGPLQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA 372 ++ +LDD G T T+ + AAS +A L G +L+ GDRALLVYPPSL F+VAF+ CL AG++AVPVYPPDP KL++D+ AFA A SGA +ALTSS Y HA Sbjct: 4 LWTYLDDDGAETMGLTYAEVDAASADLAAALLGEYKLQVGDRALLVYPPSLHFVVAFMACLRAGVIAVPVYPPDPRKLQKDISAFARAADDSGACLALTSSLYDHA 109
BLAST of jgi.p|Trimin1|132460 vs. uniprot
Match: A0A6G0XHZ7_9STRA (Carrier domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHZ7_9STRA) HSP 1 Score: 123 bits (309), Expect = 2.790e-30 Identity = 66/131 (50.38%), Postives = 90/131 (68.70%), Query Frame = 1 Query: 1 RSVLEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADHL-TGP------LQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA 372 +++LE LDHW + P K ++ F+DD G + T+ + A S ++A L T P L L +G+R LLVYPP LDFIV FL CL AG+VAVPVYPPDP KLR+D+V FA V +++GA VALT+ +Y++A Sbjct: 17 KTLLERLDHWTSHHPDKNLYEFVDDNGRVVDSLTYKDVHARSSNLAKWLVTSPNVSSKGLGLARGERVLLVYPPGLDFIVTFLACLRAGVVAVPVYPPDPRKLRKDIVMFATVCSNTGAKVALTNKSYNYA 147 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132460 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17303 ID=mRNA_17303|Name=jgi.p|Trimin1|132460|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=372bp|location=Sequence derived from alignment at Contig_204:194072..194443+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AGATCAGTGCTGGAGGCCCTGGACCACTGGGCTGCTGCCACACCCTCGAAback to top protein sequence of jgi.p|Trimin1|132460 >Trimin1|132460|gw1.204.11.1 ID=Trimin1|132460|gw1.204.11.1|Name=jgi.p|Trimin1|132460|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=124bp RSVLEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADHLTback to top mRNA from alignment at Contig_204:194072..194443+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17303 ID=mRNA_17303|Name=jgi.p|Trimin1|132460|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=372bp|location=Sequence derived from alignment at Contig_204:194072..194443+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_204:194072..194443+ >mRNA_17303 ID=mRNA_17303|Name=jgi.p|Trimin1|132460|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=372bp|location=Sequence derived from alignment at Contig_204:194072..194443+ (Tribonema minus UTEX_B_3156 )back to top |