mRNA_17026 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|134603
Unique NamemRNA_17026
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|134603 vs. uniprot
Match: A0A835Z9E5_9STRA (PARP catalytic domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9E5_9STRA)

HSP 1 Score: 310 bits (795), Expect = 7.450e-107
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1 
Query:    1 EYNLAHGHLTSQSELAASGMRVAQIDVYETSEKVAEQYRQARSQLAQASKDIEELWVLHGTSSSVVPNIMCGGFKVGGREGIPIRHGSQHGEGVYTSTQLSIALSHTSNESPAMVIMARALKGAHIRSSAASAAYDSWSPSNNWYIFKSGAQLLPVYVIHL 483
            EYNLAHGHLTSQSELAASGMRVAQIDVYETSEKVAEQYRQARSQLAQASKDIEELWVLHGTSSSVVPNIMCGGFKVGGREGIPIRHGSQHGEGVYTSTQLSIALSHTSNESPAMVIMARALKGAHIRSSAASAAYDSWSPSNNWYIFKSGAQLLPVYVIHL
Sbjct:    1 EYNLAHGHLTSQSELAASGMRVAQIDVYETSEKVAEQYRQARSQLAQASKDIEELWVLHGTSSSVVPNIMCGGFKVGGREGIPIRHGSQHGEGVYTSTQLSIALSHTSNESPAMVIMARALKGAHIRSSAASAAYDSWSPSNNWYIFKSGAQLLPVYVIHL 161
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BLAST of jgi.p|Trimin1|134603 vs. uniprot
Match: A0A835Z184_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z184_9STRA)

HSP 1 Score: 189 bits (481), Expect = 9.910e-59
Identity = 97/125 (77.60%), Postives = 106/125 (84.80%), Query Frame = 1 
Query:    1 EYNLAHGHLTSQSELAASGMRVAQIDVYETSEKVAEQYRQARSQLAQASKDIEELWVLHGTSSSVVPNIMCGGFKVGGREGIPIRHGSQHGEGVYTSTQLSIALSHTSNESPAMVIMARALKGAH 375
            EY +AHGHLTSQ  LAASG +V QIDVYETSEKVAEQY + RS LAQA+K IEE+WVLHGTSSS+VP IMCGGFKVGG +GI  RHGSQHG GVYTST ++ AL HT NE PAMVIMARALKGAH
Sbjct:   52 EYKIAHGHLTSQGGLAASGFKVVQIDVYETSEKVAEQYAKLRSHLAQANKSIEEIWVLHGTSSSIVPKIMCGGFKVGGLDGILARHGSQHGRGVYTSTHVADALRHTDNERPAMVIMARALKGAH 176
[Close]
BLAST of jgi.p|Trimin1|134603 vs. uniprot
Match: A0A836CHI6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHI6_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.900e-19
Identity = 53/141 (37.59%), Postives = 73/141 (51.77%), Query Frame = 1 
Query:   64 VAQIDVYETSEKVAEQYRQARSQLAQASKDIEELWVLHGTSSSVVPNIMCGGFKV-GGREGIPIRHGSQHGEGVYTST-QLSIALSHTSNESPAMVIMARALKGAHIRSSAASAAYDSWSPSNNWYIFKSGAQLLPVYVIH 480
            V ++  YE    V + +   +S+L  A K  +E WV H T    +P IMC GF+V G     P+ +GS HG GVY ++   SI +     +    VI+ARALKG            D W    NW +F+SGAQLLP YV++
Sbjct:   19 VTEVHAYECGAAVTDSFNAKKSELQSAGKSTDEAWVFHATHRDNIPAIMCTGFRVCGSGAAFPVLNGSAHGYGVYAASGPPSINVYANEVDGTKAVILARALKGQEGERGQG----DRWGAGGNWRVFRSGAQLLPCYVVY 155
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|134603 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z9E5_9STRA7.450e-107100.00PARP catalytic domain-containing protein (Fragment... [more]
A0A835Z184_9STRA9.910e-5977.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CHI6_9STRA5.900e-1937.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_169contigContig_169:288994..289476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|134603|gw1.169.16.1
DescriptionPoly(ADP-ribose) polymerase catalytic domain
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2D08G@1|root,2SD6R@2759|Eukaryota
Evalue4.4e-16
Seed ortholog227086.JGI_V11_130672
Hectar predicted targeting categoryother localisation
TranscriptId134925
TrackFilteredModels1
ProteinId134603
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134603gene_17026Tribonema minus UTEX_B_3156 geneContig_169 288994..289476 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17026_1exon_17026_1Tribonema minus UTEX_B_3156 exonContig_169 288994..289476 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17026CDS_17026Tribonema minus UTEX_B_3156 CDSContig_169 288994..289476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134603Trimin1|134603|gw1.169.16.1Tribonema minus UTEX_B_3156 polypeptideContig_169 288994..289476 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17026 ID=mRNA_17026|Name=jgi.p|Trimin1|134603|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=483bp|location=Sequence derived from alignment at Contig_169:288994..289476- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAATACAACTTGGCGCATGGCCATTTGACGAGCCAGAGCGAGCTCGCAGC
GAGCGGCATGAGAGTCGCTCAAATCGACGTCTACGAGACAAGCGAAAAGG
TGGCCGAGCAGTACAGACAGGCACGCTCGCAGCTGGCGCAGGCTAGCAAG
GATATCGAGGAATTATGGGTCTTGCATGGCACAAGCAGCAGCGTGGTACC
CAACATCATGTGTGGCGGCTTTAAGGTTGGGGGCCGTGAAGGCATACCCA
TACGGCACGGCAGCCAACACGGCGAAGGCGTGTATACGTCCACACAGCTG
TCCATTGCACTGTCCCATACCAGCAATGAATCCCCTGCTATGGTCATCAT
GGCACGCGCTTTGAAGGGTGCACACATACGTAGCAGCGCGGCCTCAGCTG
CGTACGACTCATGGTCACCCAGCAACAACTGGTACATCTTCAAGAGCGGG
GCACAGCTTCTGCCTGTCTACGTGATACACTTG
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protein sequence of jgi.p|Trimin1|134603

>Trimin1|134603|gw1.169.16.1 ID=Trimin1|134603|gw1.169.16.1|Name=jgi.p|Trimin1|134603|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=161bp
EYNLAHGHLTSQSELAASGMRVAQIDVYETSEKVAEQYRQARSQLAQASK
DIEELWVLHGTSSSVVPNIMCGGFKVGGREGIPIRHGSQHGEGVYTSTQL
SIALSHTSNESPAMVIMARALKGAHIRSSAASAAYDSWSPSNNWYIFKSG
AQLLPVYVIHL
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mRNA from alignment at Contig_169:288994..289476-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17026 ID=mRNA_17026|Name=jgi.p|Trimin1|134603|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=483bp|location=Sequence derived from alignment at Contig_169:288994..289476- (Tribonema minus UTEX_B_3156 )
GAATACAACTTGGCGCATGGCCATTTGACGAGCCAGAGCGAGCTCGCAGC
GAGCGGCATGAGAGTCGCTCAAATCGACGTCTACGAGACAAGCGAAAAGG
TGGCCGAGCAGTACAGACAGGCACGCTCGCAGCTGGCGCAGGCTAGCAAG
GATATCGAGGAATTATGGGTCTTGCATGGCACAAGCAGCAGCGTGGTACC
CAACATCATGTGTGGCGGCTTTAAGGTTGGGGGCCGTGAAGGCATACCCA
TACGGCACGGCAGCCAACACGGCGAAGGCGTGTATACGTCCACACAGCTG
TCCATTGCACTGTCCCATACCAGCAATGAATCCCCTGCTATGGTCATCAT
GGCACGCGCTTTGAAGGGTGCACACATACGTAGCAGCGCGGCCTCAGCTG
CGTACGACTCATGGTCACCCAGCAACAACTGGTACATCTTCAAGAGCGGG
GCACAGCTTCTGCCTGTCTACGTGATACACTTG
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Coding sequence (CDS) from alignment at Contig_169:288994..289476-

>mRNA_17026 ID=mRNA_17026|Name=jgi.p|Trimin1|134603|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=483bp|location=Sequence derived from alignment at Contig_169:288994..289476- (Tribonema minus UTEX_B_3156 )
GAATACAACTTGGCGCATGGCCATTTGACGAGCCAGAGCGAGCTCGCAGC
GAGCGGCATGAGAGTCGCTCAAATCGACGTCTACGAGACAAGCGAAAAGG
TGGCCGAGCAGTACAGACAGGCACGCTCGCAGCTGGCGCAGGCTAGCAAG
GATATCGAGGAATTATGGGTCTTGCATGGCACAAGCAGCAGCGTGGTACC
CAACATCATGTGTGGCGGCTTTAAGGTTGGGGGCCGTGAAGGCATACCCA
TACGGCACGGCAGCCAACACGGCGAAGGCGTGTATACGTCCACACAGCTG
TCCATTGCACTGTCCCATACCAGCAATGAATCCCCTGCTATGGTCATCAT
GGCACGCGCTTTGAAGGGTGCACACATACGTAGCAGCGCGGCCTCAGCTG
CGTACGACTCATGGTCACCCAGCAACAACTGGTACATCTTCAAGAGCGGG
GCACAGCTTCTGCCTGTCTACGTGATACACTTG
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