mRNA_16958 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|133201 vs. uniprot
Match: A0A835Z6J3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J3_9STRA) HSP 1 Score: 276 bits (706), Expect = 2.210e-93 Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1 Query: 1 QGIKPNIRSWGALLDAIGKAGQVADMMAWYGEMLTSGGXXXXXXXXXXXXXXXXXXRELGVAEGIWREMRDRQLEPDVWSYAALITCYAMAKQPDKAEDVLAEMVQSATIKPNAITFNSIMKAYMNDKRLDEAERVIGRMRAAGVEPILGTWTGIIHA 474 QGIKPNIRSWGALLDAIGKAGQVADMMAWYGEMLTSGGXXXXXXXXXXXXXXXXXXRELGVAEGIWREMRDRQLEPDVWSYAALITCYAMAKQPDKAEDVLAEMVQSATIKPNAITFNSIMKAYMNDKRLDEAERVIGRMRAAGVEPILGTWTGIIHA Sbjct: 1 QGIKPNIRSWGALLDAIGKAGQVADMMAWYGEMLTSGGXXXXXXXXXXXXXXXXXXRELGVAEGIWREMRDRQLEPDVWSYAALITCYAMAKQPDKAEDVLAEMVQSATIKPNAITFNSIMKAYMNDKRLDEAERVIGRMRAAGVEPILGTWTGIIHA 158
BLAST of jgi.p|Trimin1|133201 vs. uniprot
Match: A0A835Z5Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z3_9STRA) HSP 1 Score: 205 bits (521), Expect = 8.690e-63 Identity = 123/158 (77.85%), Postives = 133/158 (84.18%), Query Frame = 1 Query: 1 QGIKPNIRSWGALLDAIGKAGQVADMMAWYGEMLTSGGXXXXXXXXXXXXXXXXXXRELGVAEGIWREMRDRQLEPDVWSYAALITCYAMAKQPDKAEDVLAEMVQSATIKPNAITFNSIMKAYMNDKRLDEAERVIGRMRAAGVEPILGTWTGIIHA 474 QGIKPN SWGALLDAIGKAGQVA+MMAWYGEML SG XXXXXXXXXXXXXXXXXX E G+ E IWR+M DRQLEPDV SY I+CYA A QPD+AE VLAEM QSA +KPNA FNS+M+AY+NDKRLDEAER+IGRMRAAGVEP TW IIHA Sbjct: 119 QGIKPNAHSWGALLDAIGKAGQVAEMMAWYGEMLASGXXXXXXXXXXXXXXXXXXXXEPGIVERIWRDMLDRQLEPDVKSYNTRISCYATANQPDQAEGVLAEMCQSAAVKPNAFCFNSLMQAYINDKRLDEAERIIGRMRAAGVEPDFCTWRVIIHA 276
BLAST of jgi.p|Trimin1|133201 vs. uniprot
Match: A0A836CEZ1_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEZ1_9STRA) HSP 1 Score: 190 bits (482), Expect = 4.100e-55 Identity = 100/170 (58.82%), Postives = 118/170 (69.41%), Query Frame = 1 Query: 4 GIKPNIRSWGALLDAIGKAGQVADMMAWYGEMLTSGGXXXXXXXXXXXXXXXXXXRELGVAEGIWREMRDRQLEPDVWSYAALITCYAMAKQPDKAEDVLAEMVQSATIKPNAITFNS-------------IMKAYMNDKRLDEAERVIGRMRAAGVEPILGTWTGIIHA 474 GIK ++RSW LL+AIG+AGQV +MMAWY EML SGG ELG+AEGIWREMRDRQL PDV +Y ALITCYA A+QPDKAE V+AEM QSA +KP+AI S +M+AY+ND+RLD+A+RVIGRMRAAG +PI GTWT II A Sbjct: 227 GIKLDVRSWNVLLNAIGRAGQVTEMMAWYREMLKSGGLQPDTVLMTTLLDNAGKAGELGIAEGIWREMRDRQLAPDVKAYNALITCYATARQPDKAEQVIAEMCQSAAVKPDAIALTSCVPLNMLMDVCYNLMQAYINDERLDDADRVIGRMRAAGADPISGTWTTIICA 396
BLAST of jgi.p|Trimin1|133201 vs. uniprot
Match: A0A836CEM5_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM5_9STRA) HSP 1 Score: 186 bits (471), Expect = 2.370e-54 Identity = 100/184 (54.35%), Postives = 120/184 (65.22%), Query Frame = 1 Query: 1 QGIKPNIRSWGALLDAIGKAGQVADMMAWYGEMLTSGGXXXXXXXXXXXXXXXXXXRELGVAEGIWREMRDRQLEPDVWSYAALITCYAMAKQPDKAEDVLAEMVQSATIKPNAITFN--------------------------SIMKAYMNDKRLDEAERVIGRMRAAGVEPILGTWTGIIHA 474 +GI+P+++SWGALL AIG+AGQ+A+MMA Y EM +GG E+ +AEGIW EMRDRQL PDV +Y ALITCYA AKQPDK E VLAE ++SA +KP+AI F S+M+AY+N+KRLDEAERVIGRMRAAGVEPILGTW IIHA Sbjct: 119 EGIRPDLQSWGALLHAIGRAGQLAEMMACYREMCATGGVQPNLVIMTTLLDNAGKAGEVSIAEGIWSEMRDRQLAPDVKTYNALITCYATAKQPDKVEGVLAERIRSAAVKPDAIMFTRACADFRTVLSTMRPALLLVRPPCMVSLMQAYINNKRLDEAERVIGRMRAAGVEPILGTWRSIIHA 302
BLAST of jgi.p|Trimin1|133201 vs. uniprot
Match: A0A836CK12_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK12_9STRA) HSP 1 Score: 159 bits (403), Expect = 1.840e-46 Identity = 81/116 (69.83%), Postives = 88/116 (75.86%), Query Frame = 1 Query: 4 GIKPNIRSWGALLDAIGKAGQVADMMAWYGEMLTSGGXXXXXXXXXXXXXXXXXXRELGVAEGIWREMRDRQLEPDVWSYAALITCYAMAKQPDKAEDVLAEMVQSATIKPNAITF 351 G+KPN RSWGALLDAIG+AGQVA+MMAWY EMLTSGG ELG+AEGIWREMRDRQLEP+ +SY+A I CYA AKQPDKAE VL EMVQSATIKPNAI F Sbjct: 103 GMKPNERSWGALLDAIGRAGQVAEMMAWYAEMLTSGGLQPNNVILNSMLAHAGTAGELGIAEGIWREMRDRQLEPNSYSYSAFINCYATAKQPDKAEGVLTEMVQSATIKPNAIAF 218
BLAST of jgi.p|Trimin1|133201 vs. uniprot
Match: A0A835Z497_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z497_9STRA) HSP 1 Score: 149 bits (377), Expect = 3.470e-43 Identity = 81/156 (51.92%), Postives = 93/156 (59.62%), Query Frame = 1 Query: 7 IKPNIRSWGALLDAIGKAGQVADMMAWYGEMLTSGGXXXXXXXXXXXXXXXXXXRELGVAEGIWREMRDRQLEPDVWSYAALITCYAMAKQPDKAEDVLAEMVQSATIKPNAITFNSIMKAYMNDKRLDEAERVIGRMRAAGVEPILGTWTGIIHA 474 IKPN +SW LL+AIG+AGQV +MMAWYGEM +G + +AEGIWREMR+RQL+P V+ Y+A I CYAMAKQPDKAE+VLAEMVQSATIKPN RMRAAGV P TW IIHA Sbjct: 1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTG-EQPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXXSRMRAAGVPPDQDTWKSIIHA 155
BLAST of jgi.p|Trimin1|133201 vs. uniprot
Match: A0A835YY11_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY11_9STRA) HSP 1 Score: 146 bits (368), Expect = 6.900e-41 Identity = 78/158 (49.37%), Postives = 102/158 (64.56%), Query Frame = 1 Query: 1 QGIKPNIRSWGALLDAIGKAGQVADMMAWYGEMLTSGGXXXXXXXXXXXXXXXXXXRELGVAEGIWREMRDRQLEPDVWSYAALITCYAMAKQPDKAEDVLAEMVQSATIKPNAITFNSIMKAYMNDKRLDEAERVIGRMRAAGVEPILGTWTGIIHA 474 QG++P+ W ALLDA+G+A Q+ M+A Y EML SG + GVAE IWREMR R++ P V SY AL+ CYA+A +P+KAE LAEM QS T P+AI + S+MKAY ++ RLDEA +I RMRA+GV+P TWT +I+A Sbjct: 60 QGVRPHTSCWNALLDALGRAKQLDQMLATYREMLASG--------------------QSGVAEEIWREMRQRRMTPGVKSYGALVNCYAVAGEPEKAEAKLAEMRQSTTTAPDAIMYCSLMKAYFSNGRLDEAVLIIDRMRASGVQPTFDTWTTVINA 197
BLAST of jgi.p|Trimin1|133201 vs. uniprot
Match: A0A836CDU9_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU9_9STRA) HSP 1 Score: 145 bits (366), Expect = 9.400e-41 Identity = 82/158 (51.90%), Postives = 97/158 (61.39%), Query Frame = 1 Query: 1 QGIKPNIRSWGALLDAIGKAGQVADMMAWYGEMLTSGGXXXXXXXXXXXXXXXXXXRELGVAEGIWREMRDRQLEPDVWSYAALITCYAMAKQPDKAEDVLAEMVQSATIKPNAITFNSIMKAYMNDKRLDEAERVIGRMRAAGVEPILGTWTGIIHA 474 +GIKP+ +WGALL+ IG AG V M+A Y EM T G E+ + +WREM RQL PDV SY I CYA K P KAE+VLAEM+QSA I +AI+FNS+MKAY RL+EAE VI RMRAAGV+P W GIIHA Sbjct: 45 EGIKPSAPTWGALLNTIGTAGHVEKMLAKYKEMCTIG--PRPTVITMTTLLDHAGAGEVDIFNDLWREMHYRQLVPDVKSYNTRINCYATVKDPGKAEEVLAEMIQSAAITLDAISFNSLMKAYYCSGRLNEAELVIDRMRAAGVQPTADIWKGIIHA 200
BLAST of jgi.p|Trimin1|133201 vs. uniprot
Match: A0A836CJ97_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ97_9STRA) HSP 1 Score: 137 bits (345), Expect = 1.980e-38 Identity = 90/156 (57.69%), Postives = 102/156 (65.38%), Query Frame = 1 Query: 7 IKPNIRSWGALLDAIGKAGQVADMMAWYGEMLTSGGXXXXXXXXXXXXXXXXXXRELGVAEGIWREMRDRQLEPDVWSYAALITCYAMAKQPDKAEDVLAEMVQSATIKPNAITFNSIMKAYMNDKRLDEAERVIGRMRAAGVEPILGTWTGIIHA 474 IKP ++SW LLDAIG+AGQ A+MMAWYG+M +G XXXXXXXXXXXXX I CYA AK P KAE+VLAEMVQSATIKPNAITF S+MKAY+ +RLD+AE VI RMRAAGV+P L W IIHA Sbjct: 1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTG-EQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHA 155
BLAST of jgi.p|Trimin1|133201 vs. uniprot
Match: A0A835YWM4_9STRA (Smr domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWM4_9STRA) HSP 1 Score: 145 bits (365), Expect = 2.570e-38 Identity = 86/191 (45.03%), Postives = 103/191 (53.93%), Query Frame = 1 Query: 1 QGIKPNIRSWGALLDAIGKAGQVADMMAWYGEMLTSGGXXXXXXXXXXXXXXXXXXRELGVAEGIWREMRDRQLEPDVWSYAALITCYAMAKQPDKAEDVLAEMVQSATIKPNAITFNS---------------------------------IMKAYMNDKRLDEAERVIGRMRAAGVEPILGTWTGIIHA 474 QGIKP++RSW LL+AIG+ GQVA ELG+AEGIW EM + QL PDV +Y ALI CY AKQPDKAE+VLAEM+QSA +KP+AI F S +M+AY+N +RLD+AE VI RMRAAG EPIL TWT +I A Sbjct: 195 QGIKPDVRSWNVLLNAIGRTGQVA-------------------------------AGELGIAEGIWSEMLEHQLAPDVKTYNALIMCYTTAKQPDKAEEVLAEMIQSAAVKPDAIMFTSAIGTLIRACADFRTVLSTMRPALLLVHPPRMISVMQAYINAERLDDAEGVISRMRAAGAEPILSTWTALIIA 354 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133201 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16958 ID=mRNA_16958|Name=jgi.p|Trimin1|133201|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=474bp|location=Sequence derived from alignment at Contig_167:237115..239097+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAGGGCATCAAACCGAATATACGGAGCTGGGGTGCGCTCTTGGATGCCATback to top protein sequence of jgi.p|Trimin1|133201 >Trimin1|133201|gw1.167.14.1 ID=Trimin1|133201|gw1.167.14.1|Name=jgi.p|Trimin1|133201|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=158bp QGIKPNIRSWGALLDAIGKAGQVADMMAWYGEMLTSGGVKPNIIIMTTLLback to top mRNA from alignment at Contig_167:237115..239097+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16958 ID=mRNA_16958|Name=jgi.p|Trimin1|133201|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1983bp|location=Sequence derived from alignment at Contig_167:237115..239097+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_167:237115..239097+ >mRNA_16958 ID=mRNA_16958|Name=jgi.p|Trimin1|133201|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=474bp|location=Sequence derived from alignment at Contig_167:237115..239097+ (Tribonema minus UTEX_B_3156 )back to top |