mRNA_16829 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353168
Unique NamemRNA_16829
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|353168 vs. uniprot
Match: A0A835Z7S8_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7S8_9STRA)

HSP 1 Score: 496 bits (1277), Expect = 4.330e-177
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 3 
Query:   27 MLRVFLLTVVFATYVQSSAGFIAGAKGAAAVWLRRPAVISRQHRLSMMAPNLPPAPLGYTMPHSSASPKVQVDFFFDLACPFAGRMYLTLQKVLPLYEGKGVLWKMYHVPQPWHPQSTLMHEAALAVNTVKPEAFFDFCHAVWTQREEKFIDDVTVDKTRNQIYDVLAEIAAEVGVEKEAVRQKLELKALGNMGTHMTQGIKFATQYHRKRGVHVTPTVFMNGIENGAISSSATVDEWKETLDALVAA 770
            MLRVFLLTVVFATYVQSSAGFIAGAKGAAAVWLRRPAVISRQHRLSMMAPNLPPAPLGYTMPHSSASPKVQVDFFFDLACPFAGRMYLTLQKVLPLYEGKGVLWKMYHVPQPWHPQSTLMHEAALAVNTVKPEAFFDFCHAVWTQREEKFIDDVTVDKTRNQIYDVLAEIAAEVGVEKEAVRQKLELKALGNMGTHMTQGIKFATQYHRKRGVHVTPTVFMNGIENGAISSSATVDEWKETLDALVAA
Sbjct:    1 MLRVFLLTVVFATYVQSSAGFIAGAKGAAAVWLRRPAVISRQHRLSMMAPNLPPAPLGYTMPHSSASPKVQVDFFFDLACPFAGRMYLTLQKVLPLYEGKGVLWKMYHVPQPWHPQSTLMHEAALAVNTVKPEAFFDFCHAVWTQREEKFIDDVTVDKTRNQIYDVLAEIAAEVGVEKEAVRQKLELKALGNMGTHMTQGIKFATQYHRKRGVHVTPTVFMNGIENGAISSSATVDEWKETLDALVAA 248
[Close]
BLAST of jgi.p|Trimin1|353168 vs. uniprot
Match: A0A7S4VHI0_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4VHI0_9DINO)

HSP 1 Score: 173 bits (438), Expect = 3.130e-50
Identity = 93/205 (45.37%), Postives = 125/205 (60.98%), Query Frame = 3 
Query:  168 MAPNLPPAPLGYTMPHSSASPKVQVDFFFDLACPFAGRMYLTLQKVLPLYEGKG---VLWKMYHVPQPWHPQSTLMHEAALAVNTVKPEAFFDFCHAVWTQREEKFIDDVTVDKTRNQIYDVLAEIAAE-VGVEKEAVRQKLELKALGNMGTHMTQGIKFATQYHRKRGVHVTPTVFMNGIENGAISSSATVDEWKETLDALVAA 770
            M P LPP PLG+    +   P++ V+ F DL CPF  +M   L+ V P  E      V W   +V QPWHPQS +MHEA LAV+T KPEA + +  AV   ++E F DD  +DK+R Q+Y+ LA +A E VG+ K  V   L L+  GN G+  TQ +K+ T+ HR RGVHVTPTVF+NG E   + S  + +EWK  L+ ++AA
Sbjct:    1 MGPPLPPGPLGHPYKAAEKPPRIVVELFLDLCCPFCKKMMTALKDVAPAVEASHPGQVQWLFCNVIQPWHPQSCMMHEAFLAVSTKKPEAAWPYAWAV-LDKQESFFDDQVMDKSRKQLYEELASVAEESVGLPKAEVLDVLALQGAGNAGSQATQLVKWYTKMHRVRGVHVTPTVFVNGTEAPQVGSGWSAEEWKAFLEPMLAA 204
[Close]
BLAST of jgi.p|Trimin1|353168 vs. uniprot
Match: A0A7S1WTV5_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WTV5_ALECA)

HSP 1 Score: 166 bits (421), Expect = 1.130e-47
Identity = 89/205 (43.41%), Postives = 126/205 (61.46%), Query Frame = 3 
Query:  168 MAPNLPPAPLGYTMPHSSASPKVQVDFFFDLACPFAGRMYLTLQKVLPLYEGK---GVLWKMYHVPQPWHPQSTLMHEAALAVNTVKPEAFFDFCHAVWTQREEKFIDDVTVDKTRNQIYDVLAEIA-AEVGVEKEAVRQKLELKALGNMGTHMTQGIKFATQYHRKRGVHVTPTVFMNGIENGAISSSATVDEWKETLDALVAA 770
            M P LPP PLG+    +   PK+ V+ F DL CPF+ +M +TL++V    E      V W   +V QPWHPQS +MHE  LAV+  K EA + F  A++  ++E F DD  +DK+R Q+Y+ +A IA + VGV K  V   L L+  GN G+ +TQ +K+ T+ HR RGVHVTPTVF+NG E   + S  + +EWK  ++ ++ A
Sbjct:    1 MGPPLPPGPLGHPFKAAERPPKIVVELFLDLCCPFSKKMMMTLKEVTAAVEASCPGQVQWLFCNVIQPWHPQSCMMHEVCLAVSAKKAEATWPFIWALF-DKQESFFDDQVMDKSRKQLYEEMAAIAESAVGVPKADVLGALALQGAGNSGSQVTQLVKWYTKMHRVRGVHVTPTVFVNGTEAPQVGSGWSAEEWKAFVEPMLTA 204
[Close]
BLAST of jgi.p|Trimin1|353168 vs. uniprot
Match: A0A813KXB5_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KXB5_POLGL)

HSP 1 Score: 163 bits (412), Expect = 2.050e-46
Identity = 89/198 (44.95%), Postives = 130/198 (65.66%), Query Frame = 3 
Query:  180 LPPAPLGYTMPHSSASPKVQVDFFFDLACPFAGRMYLTLQK-VLPLYEGKGVLWKMYHVPQPWHPQSTLMHEAALAV-NTVKPEAFFDFCHAVWTQREEKFIDDVTVDKTRNQIYDVLAEIAAEVGVEKEAVRQKLELKALGNMGTHMTQGIKFATQYHRKRGVHVTPTVFMNGIENGAISSSATVDEWKETLDALVA 767
            +P  P+G   P    +  V V+ F DL CP++ +M+ T+ + V P YEG+ V +  + V QPWH QS  MHEA+LAV ++  P+ F+DF  A++ ++EE F DD+ +DKTRN++Y  LA++A EVGV    V  +L+LK  GN G+ +TQ  K+AT+ HR RGVHVTPTV +NG+E G + S  + +EW+  LD  +A
Sbjct:    1 MPSVPVGVARPGGQKA-SVTVELFLDLCCPYSNKMFKTISEHVAPKYEGE-VKFVFHSVAQPWHAQSCYMHEASLAVLDSAGPQKFWDFAGALFCKQEE-FFDDMVMDKTRNELYSELAKVAEEVGVAPAEVLNRLQLKP-GNAGSAVTQRFKWATKLHRSRGVHVTPTVHLNGLEAGVVGSGWSPEEWQSFLDYHLA 194
[Close]
BLAST of jgi.p|Trimin1|353168 vs. uniprot
Match: A0A7S1FB44_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FB44_NOCSC)

HSP 1 Score: 156 bits (395), Expect = 7.780e-44
Identity = 85/199 (42.71%), Postives = 126/199 (63.32%), Query Frame = 3 
Query:  180 LPPAPLGYTMPHSSASPKVQVDFFFDLACPFAGRMY-LTLQKVLPLYEGKGVLWKMYHVPQPWHPQSTLMHEAALAVNTVKPEAFFDFCHAVWTQREEKFIDDVTVDKTRNQIYDVLAEIAAEVGVEKEAVRQKLELKALG---NMGTHMTQGIKFATQYHRKRGVHVTPTVFMNGIENGAISSSATVDEWKETLDALV 764
            +P  PLG+ +   +A  +++++ F D  CPF  + +   + +VLPLY+ +G+ ++ Y+V QPWH QS+ MHEAALAV  V  + +  F  A++  +E+ F DD   DK+R  IY  L  +AA VGV+ EAV  KL  K +    N G  +TQ +KF T++HR RG+HVTPTV +NG+   +ISS  TV++W   LDAL+
Sbjct:    3 VPSRPLGHRLGDVTA--QIEIEAFLDFCCPFCRKHWNCFVLEVLPLYKDRGLNYRHYNVAQPWHAQSSYMHEAALAVEEVDADKYTAFATALFAAQEQ-FFDDAVWDKSRATIYQELCTLAASVGVDAEAVAAKLARKVVEGSHNTGNDVTQALKFYTKFHRTRGMHVTPTVMVNGVVEDSISSGWTVEQWTGYLDALL 198
[Close]
BLAST of jgi.p|Trimin1|353168 vs. uniprot
Match: A0A813G1E7_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G1E7_POLGL)

HSP 1 Score: 157 bits (396), Expect = 3.490e-43
Identity = 90/222 (40.54%), Postives = 131/222 (59.01%), Query Frame = 3 
Query:  174 PNLPPAPLGYTMPHSSASPKVQVDFFFDLACPFAGRMYLTLQK-VLPLYEGKGVLWKM----------------------YHVPQPWHPQSTLMHEAALAV-NTVKPEAFFDFCHAVWTQREEKFIDDVTVDKTRNQIYDVLAEIAAEVGVEKEAVRQKLELKALGNMGTHMTQGIKFATQYHRKRGVHVTPTVFMNGIENGAISSSATVDEWKETLDALVA 767
            P +P  P+G   P    +  V V+ F DL CP++ +M+ T+ + V P YEG+  L  +                      + V QPWH QS  MHEA+LAV ++  P+ F+DF  A++ ++EE F DD+ +DKTRN++Y  LA++A EVGV    V  +L+LK  GN G+ +TQ  K+AT+ HR RGVHVTPTV +NG+E G + S  + +EW+  LD  +A
Sbjct:   43 PPMPSVPVGVARPGGQKA-SVTVELFLDLCCPYSNKMFKTISEHVAPKYEGEAGLMNICSLTQATLDMNKESLSQVKFVFHSVAQPWHAQSCYMHEASLAVLDSAGPQKFWDFAGALFCKQEE-FFDDMVMDKTRNELYSELAKVAEEVGVAPAEVLNRLQLKP-GNAGSAVTQRFKWATKLHRSRGVHVTPTVHLNGLEAGVVGSGWSPEEWQSFLDYHLA 261
[Close]
BLAST of jgi.p|Trimin1|353168 vs. uniprot
Match: R1FWQ6_EMIHU (SAP domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FWQ6_EMIHU)

HSP 1 Score: 151 bits (382), Expect = 8.560e-41
Identity = 92/254 (36.22%), Postives = 147/254 (57.87%), Query Frame = 3 
Query:   24 AMLRVFLLTVVFATYVQSSAGFIA-----GAKGAAAVWLRRPAVISRQHRLSMMAPNLPPAPLGYTMPHSSASPKVQVDFFFDLACPFAGRMYLTLQKVLPLYE-GKGVLWKMYHVPQPWHPQSTLMHEAALAVNTVKPEAFFDFCHAVWTQREE-KFIDDVTVDKTRNQIYDVLAEIAAEVGVEKEAVRQKLELKALG---NMGTHMTQGIKFATQYHRKRGVHVTPTVFMNGIENGAISSSATVDEWKETLD 755
            A LR  L   + + Y++S+AG        G        +R  AV++    L +M P L P  +GY +  ++A+  V+V+ F DL CPF+ +M++TL +   +   G    + ++ VPQPWH Q + +HEAALAV  V P+ + ++  A++   ++ KF D  T +K+R QI   L ++AA VGV++ A   KL ++A     N+G  +TQ +K+  ++HR RGVHVTPTV +NG+E G +SS  T ++W   L+
Sbjct:   32 AWLRRRLHAAIVSEYLESAAGAAGEYVEFGTLSTRVELIRSSAVLA----LRLMGPPLSPTAIGYVLNSAAAASPVRVEMFLDLICPFSRKMFVTLTEGRVIERAGDRACFVLHQVPQPWHAQGSYVHEAALAVKEVAPDLYPNYIGAIYECFDKGKFTDRDTWEKSRTQINAELCDLAASVGVDRAATAAKLAMRASADGNNVGNEVTQAVKWICKHHRTRGVHVTPTVHVNGLEAGIVSSGWTPEQWLAFLE 281
[Close]
BLAST of jgi.p|Trimin1|353168 vs. uniprot
Match: R1CC22_EMIHU (Thioredoxin-like_fold domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CC22_EMIHU)

HSP 1 Score: 149 bits (377), Expect = 3.070e-40
Identity = 80/204 (39.22%), Postives = 127/204 (62.25%), Query Frame = 3 
Query:  159 LSMMAPNLPPAPLGYTMPHSSASPKVQVDFFFDLACPFAGRMYLTLQKVLPLYE-GKGVLWKMYHVPQPWHPQSTLMHEAALAVNTVKPEAFFDFCHAVWTQREE-KFIDDVTVDKTRNQIYDVLAEIAAEVGVEKEAVRQKLELKALG---NMGTHMTQGIKFATQYHRKRGVHVTPTVFMNGIENGAISSSATVDEWKETLD 755
            L +M P L P  +GY +  ++A+  V+V+ F DL CPF+ +M++TL +   +   G    + ++ VPQPWH Q + +HEAALAV  V P+ + ++  A++   ++ KF D  T +K+R QI   L ++AA VGV++ A   KL ++A     N+G  +TQ +K+  ++HR RGVHVTPTV +NG+E G +SS  T ++W   L+
Sbjct:   61 LRLMGPPLSPTAIGYVLNSAAAASPVRVEMFLDLICPFSRKMFVTLTEGRVIERAGDRACFVLHQVPQPWHAQGSYVHEAALAVKEVAPDLYPNYIGAIYECFDKGKFTDRDTWEKSRTQINAELCDLAASVGVDRAATAAKLAMRASADGNNVGNEVTQAVKWICKHHRTRGVHVTPTVHVNGLEAGIVSSGWTPEQWLAFLE 264
[Close]
BLAST of jgi.p|Trimin1|353168 vs. uniprot
Match: K8Z102_NANGC (Thioredoxin-like_fold domain-containing protein (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z102_NANGC)

HSP 1 Score: 147 bits (370), Expect = 3.970e-40
Identity = 80/196 (40.82%), Postives = 119/196 (60.71%), Query Frame = 3 
Query:  177 NLPPAPLGYTMPHSSASPKVQVDFFFDLACPFAGRMYLTLQK--VLPLYEGKGVLWKMYHVPQPWHPQSTLMHEAALAVNTVKPEAFFDFCHAVWTQREEKFIDDVTVDKTRNQIYDVLAEIAAEVGVEKEAVRQKLELK--ALGNMGTHMTQGIKFATQYHRKRGVHVTPTVFMNGIENGAISSSATVDEWKETL 752
            ++PP P G     +  +PKV V+ F DL CP + R + TL +  ++  Y+ K V    ++V QPWH     MHEAALAV  ++P AF+ + + V+   E +F D  T + TR ++   L  +  E GV + A+ ++L L+  + GN GT  TQ +K+A +YHR+RGVHVTPTVF+NG+E   +SS+  V+EWK  L
Sbjct:    5 SIPPMPPGAAAAPALIAPKVVVEVFLDLNCPPSRRCFKTLYEGGIIEAYKDKAVQILFHNVIQPWHAVGAWMHEAALAVKDLQPSAFYPYANKVFDAME-RFSDVNTEEMTRKEVMAALIALGVEAGVPRPALEERLALQGGSSGNKGTATTQAVKWACKYHRRRGVHVTPTVFVNGLEASEVSSAWGVEEWKRLL 199
[Close]
BLAST of jgi.p|Trimin1|353168 vs. uniprot
Match: A0A7S3RBP5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RBP5_9SPIT)

HSP 1 Score: 146 bits (369), Expect = 6.110e-40
Identity = 87/177 (49.15%), Postives = 106/177 (59.89%), Query Frame = 3 
Query:  174 PNLPPAPLGYTMPHSSASPKVQVDFFFDLACPFAGRMYLTLQKVLPLYEGKGVLWKMYHVP-------QPWHPQSTLMHEAALAVNTVK-PEAFFDFCHAVWTQREEKFIDDVTVDKTRNQIYDVLAEIAAEVGVEKEAVRQKLELKALGNMGTHMTQGIKFATQYHRKRGVHVTPT 680
            P +P  PLG      S  P   V+ F DL CPF+ +M+ TL        G GV+ KM  V        QPWHPQSTLMHEAALAV  V  P+ F++FC A++  ++E F DD   DK+R+QIY  L EIAA VGV+   V   L LK  GN G  +TQ IK+AT+ HR RGVHVTPT
Sbjct:   34 PPMPSRPLGVAYLRDSGRPAQVVELFLDLCCPFSKKMFNTLV-------GGGVISKMADVDFVFMPVVQPWHPQSTLMHEAALAVREVAGPQKFWEFCEALFA-KQENFFDDAVADKSRSQIYAELLEIAASVGVQTADVGALLALKGSGNAGNGVTQEIKWATKLHRVRGVHVTPT 202
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353168 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7S8_9STRA4.330e-177100.00Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A7S4VHI0_9DINO3.130e-5045.37Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S1WTV5_ALECA1.130e-4743.41Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A813KXB5_POLGL2.050e-4644.95Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A7S1FB44_NOCSC7.780e-4442.71Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A813G1E7_POLGL3.490e-4340.54Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
R1FWQ6_EMIHU8.560e-4136.22SAP domain-containing protein n=1 Tax=Emiliania hu... [more]
R1CC22_EMIHU3.070e-4039.22Thioredoxin-like_fold domain-containing protein n=... [more]
K8Z102_NANGC3.970e-4040.82Thioredoxin-like_fold domain-containing protein (F... [more]
A0A7S3RBP5_9SPIT6.110e-4049.15Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_147contigContig_147:245445..251185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353168|estExt_Genemark1.C_Ctg_1470021
Max annot lvl2759|Eukaryota
EggNOG OGs2B2AB@1|root,2S0CB@2759|Eukaryota
Evalue2.73e-41
Seed ortholog2903.EOD19907
Hectar predicted targeting categorysignal peptide
TranscriptId353490
TrackFilteredModels1
ProteinId353168
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353168gene_16829Tribonema minus UTEX_B_3156 geneContig_147 245445..251185 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353168Trimin1|353168|estExt_Genemark1.C_Ctg_1470021Tribonema minus UTEX_B_3156 polypeptideContig_147 245482..251068 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16829_7exon_16829_7Tribonema minus UTEX_B_3156 exonContig_147 245445..245560 -
exon_16829_6exon_16829_6Tribonema minus UTEX_B_3156 exonContig_147 246298..246368 -
exon_16829_5exon_16829_5Tribonema minus UTEX_B_3156 exonContig_147 248083..248315 -
exon_16829_4exon_16829_4Tribonema minus UTEX_B_3156 exonContig_147 249059..249188 -
exon_16829_3exon_16829_3Tribonema minus UTEX_B_3156 exonContig_147 249530..249622 -
exon_16829_2exon_16829_2Tribonema minus UTEX_B_3156 exonContig_147 250928..251084 -
exon_16829_1exon_16829_1Tribonema minus UTEX_B_3156 exonContig_147 251176..251185 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_16829UTR3_16829Tribonema minus UTEX_B_3156 three_prime_UTRContig_147 245445..245481 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16829CDS_16829Tribonema minus UTEX_B_3156 CDSContig_147 250928..251068 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_16829UTR5_16829Tribonema minus UTEX_B_3156 five_prime_UTRContig_147 251176..251185 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16829 ID=mRNA_16829|Name=jgi.p|Trimin1|353168|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=810bp|location=Sequence derived from alignment at Contig_147:245445..251185- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGTTGTTTTGGCGGCCTGAGGCAGCGATGCTCCGAGTCTTTCTGCTGACT
GTCGTATTTGCAACATATGTGCAATCTTCAGCTGGTTTCATCGCGGGTGC
CAAGGGCGCTGCGGCGGTCTGGCTGAGGAGGCCCGCTGTTATAAGCAGGC
AGCACCGGCTCTCTATGATGGCTCCCAACCTGCCGCCTGCGCCTCTGGGC
TACACCATGCCGCACTCTTCGGCGTCACCGAAAGTGCAGGTTGACTTCTT
CTTCGACCTGGCCTGCCCTTTCGCAGGCCGGATGTACCTGACGCTGCAGA
AGGTGCTGCCGCTGTATGAGGGCAAGGGTGTCCTATGGAAGATGTACCAC
GTGCCACAACCGTGGCATCCGCAGAGCACCCTCATGCATGAGGCTGCACT
GGCGGTCAACACCGTCAAGCCGGAGGCGTTTTTTGACTTCTGCCATGCGG
TGTGGACACAGCGCGAAGAGAAGTTCATTGATGATGTAACTGTCGACAAG
ACTCGCAATCAGATCTACGACGTGCTGGCGGAAATAGCAGCGGAAGTGGG
GGTGGAAAAGGAGGCAGTGAGGCAGAAACTGGAGCTGAAGGCGCTGGGGA
ACATGGGCACGCACATGACCCAGGGTATCAAGTTTGCAACGCAGTACCAC
CGGAAGCGGGGAGTACACGTCACACCCACCGTCTTTATGAACGGCATTGA
AAACGGAGCCATTTCAAGTTCAGCAACTGTGGATGAGTGGAAGGAGACGC
TAGATGCACTGGTGGCTGCCTAAGGTTCAACTTCAGAGCCATGCCTCAAG
TTAGGGTAGG
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protein sequence of jgi.p|Trimin1|353168

>Trimin1|353168|estExt_Genemark1.C_Ctg_1470021 ID=Trimin1|353168|estExt_Genemark1.C_Ctg_1470021|Name=jgi.p|Trimin1|353168|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=249bp
MLRVFLLTVVFATYVQSSAGFIAGAKGAAAVWLRRPAVISRQHRLSMMAP
NLPPAPLGYTMPHSSASPKVQVDFFFDLACPFAGRMYLTLQKVLPLYEGK
GVLWKMYHVPQPWHPQSTLMHEAALAVNTVKPEAFFDFCHAVWTQREEKF
IDDVTVDKTRNQIYDVLAEIAAEVGVEKEAVRQKLELKALGNMGTHMTQG
IKFATQYHRKRGVHVTPTVFMNGIENGAISSSATVDEWKETLDALVAA*
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mRNA from alignment at Contig_147:245445..251185-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16829 ID=mRNA_16829|Name=jgi.p|Trimin1|353168|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5741bp|location=Sequence derived from alignment at Contig_147:245445..251185- (Tribonema minus UTEX_B_3156 )
GGTTGTTTTGGTGAGTGCATGAGCTAGGCCGCTTATGTGGTCCATGAGCG
CTCGTGTATCTGGCTGATACTGCGCTTTTTTCCTCATTGTGTGGTTCGCA
GGCGGCCTGAGGCAGCGATGCTCCGAGTCTTTCTGCTGACTGTCGTATTT
GCAACATATGTGCAATCTTCAGCTGGTTTCATCGCGGGTGCCAAGGGCGC
TGCGGCGGTCTGGCTGAGGAGGCCCGCTGTTATAAGCAGGCAGCACCGGC
TCTCTATGGTGAGCTCGTAAGCGCGAAGCATGTCAGAGACAGTTCATGAT
TACACTTCAGACACAGCTCCTGGCAAGCTTCACGTGCTGCCCATTGCTTA
CCTGCTTCTCCAGGCTCAGTACTGCAAATCTTGTGCAACTATGCAGCAGA
GGCAATACTTACAATGTGTGGACTGAGGGCTTGAAAAGAGGAGCACAGCA
CAGCATTTTGTACCCCGTCTCGGCAGTACTGTAGGTAGCTTGTTCAGCAG
CTCCAATGCTGAGTTCATGTGGCTGATTTGACAAATTCACTACCCCGAAC
TGATGCTGCAGTGGGGTTAAGCAATTGGCTACTTTGAAGCACGAGATAAC
TGTGGTCCCTGCGTTGATGCCAGTGGCAAGTGCGCGGTCATACAGCAGCA
GAAAACCTTGTGGACAATAATTGTGGGATTTAGATTTTCAAGTTGTATTT
GTCAGCAGAGCTTTCTATCTGGTGTGCTGTGGAGAATATGTAAGTCATTT
GCCTGGCAGCACAGCAGCACAAATGTTGGGACACAGCTTGATCCTGTGAA
CCTCAGTGCAAGGCGCCTTGCAATGCCACCAGGTGTTTCATTTGCATGTT
AGTTCCATGCTTTTACAGTCATAGAGTATTTGCTTCTGACCAAATTTGTG
TTCCCAGCCTCTTTCAAAAGCAATTGCGAGTCGCAGACTGAGTTAACAGT
CACTCATGTTGGGGGCGGCACGTGTACAAACACAACGCAAGTTCACAATA
GCATAACAATTGTAGAAACACAACGCGCGAGTTCACCATAGTAACACCAG
ATTCAACTTAAGCAGTTGAGTACCCCCATTATGCCTCACGTGGGAATGCT
GAAAGCGGTTGGAGTCTCGTAAAGGTATGCAACTGGCAGCTGCAGTGGTG
GCAGTGCTGAGGGCTTGAATGTGATGCTGCCGTTCGCCTGCGACACTGGC
TCACCTACACCACAGCTGGGCAATCTTATTAGGTATTCAGCTCATCCACA
TTGGTACCACACTTGCAGCGTATGCTGACGTTTACCACATATGCACATGT
GAGGCTGACACTGACACGTTATGCCTGTTCATGTTCCGCCTCGTCACCAG
CAAAGCCTTTTGATCGCTTTTCGCAGCATTGTCGTGTCAGCGTGTGTTAC
TGGATTAGGTCAGGATTGACACCACAGAGGAATCACACATGCATTTGCAT
GACAAGCCCCCCCCCCCCCCCCCCCCCCCCTCACGCGTTTTTTTTTAAGG
TCCTAGTTCAACTTCTTGTTGAACTCCCAGCACGAAAAACTTGTGTTGCC
TCGCCCGTGACAGATGGCTCCCAACCTGCCGCCTGCGCCTCTGGGCTACA
CCATGCCGCACTCTTCGGCGTCACCGAAAGTGCAGGTTGACTTCTTCTTC
GACCTGGTGAGTGCTCTTGGAAAAAACGAGACCCTACCAATGTCCAGCAC
AGCACCAGGCCTCGTGCGATAGGATCTGCGTGTCGGTCATGCGCGCAGCA
CGCCCGTCTCATCATTTTGATATTGATTCCTGTACAAAAAGACCACACAT
CGCACTGTCATGCTGCGAGCATGGTGAAATCGAGATTCTGTTCTGACAAA
GCCGCGACCGTCACGATGTTCCTGGTGTGCCAGGCGTGGTATTGACACTT
GTGCTTCTTTCACTGCGGCAGTAGTCGTTTCTAGTCTGTATCGCCACCCT
CGCCTCCTACGGCTTCGCTTACTGCTTCGCTTATTGGCACTACGCAGGCC
TGCCCTTTCGCAGGCCGGATGTACCTGACGCTGCAGAAGGTGCTGCCGCT
GTATGAGGGCAAGGGTGTCCTATGGAAGATGTACCACGTGCCACAACCGT
GGCATCCGCAGAGCACCCTCATGCATGGTGAGCAAGGCTTTACGTGCCAG
CACATGGAACTTCAACTTCCGATTTCGTCAGAGAAAGCGGATGCCTGGGT
GTGCTGTGATGCGTATTCTGCTGGCACACTTCTTGAATGGCGCAAGGCAA
GTGCGCAGGTCTGCAGCTCGGCTGACACGATCACATGTATGTAAGGAAGT
CTGACGCATAAGTGGCACAGGTGAAGCAGTGGTGACATCATGTAGCTGTG
TGTCTTGCGGCCTTTCGCACTTCAACTGGTGTATACGCATATGCTGATAC
CCTACGCGACACATCTAACCCTGTATAACAAACCAGCGCTGTGCACAATA
GATTGCTTTATCCATGACTTGCCCGGTTTGAAATTTATATTTGAATTGAA
TGACTTGCTGAGGGAAGCATGCCATGTGTTACACAAGTGCTGTAGTACGT
TTCGAATGTATCACAAGCAGTTTTCACCTCAAAGTCAATACTCTGCTGTG
GTACCCCATACAGTTGCTCACTGCTTGACGAATCCTTGTACTTGAGCAAT
GCAGAGGCGGCGGTGGCAATAATCCAAGTGAAGCCTCTTGGCATCGTCTG
GCATTGCCTGCGTTGTCCCCATCAACCTACATATCCATTTTCATACTCAC
ATACCCTGCATACAGTCATAAACAAGGCGAAGCGCCTGACGTAGCCTGTG
AATTCACGTCCATGAAAACTTGAACTCCCCTGATGAAATGTGACTCTCCG
TGTTCATGTACCCTGTGCAGAGGCTGCACTGGCGGTCAACACCGTCAAGC
CGGAGGCGTTTTTTGACTTCTGCCATGCGGTGTGGACACAGCGCGAAGAG
AAGTTCATTGATGATGTAACTGTCGACAAGACTCGCAATCAGATCTACGA
CGTGCTGGCGGAAATAGCAGCGGAAGTGGGGGTGGAAAAGGAGGCAGTGA
GGCAGAAACTGGAGCTGAAGGCGCTGGGGAACATGGGCACGCACATGACC
CAGGTGAGTGACTCATTTGGAATGAGTGAGTGAGTGCATGAGCAAGTGAT
TCATTGAAACACGGGCCTGCACATGACCCGGATGAATGAGTGAATGAGCG
CACTGGTGACAATCGGCACCGGAAGGCTTCAAGGCAAATGCTTGAAATTC
TGGGGACAACTCATCAGGCTCATGGTCAAGGCACCAAGAAAAGTGTTATT
CTGTTTGGATGAATCAATAAATGCCTAGTCCTAACCCTAACCCTAACCGT
TACTTTTGGATTGGGGCCTAAGCATACTCTGCGATGCATGATACTATCGT
CTGTCGAGCTCTGAACATGAATGACACATTAGTGCGGCCACACACTAAAG
GTGCGGATGCATACATTTTGACAAGTGCTGCTGTTGTGAACCTACTTCGA
GAGATGTCCTCAGGTTGAAGTTGTGTTGCAAGGCAGAAAGAAATCAATGC
TACTGCGGGAAACACCAGCAGGCACGCCTTAGCTGCATGTACAGATGCAG
CGCGCGTGCAGACAAACATACCTACCTATAAACAGCCAAAGGTGCCGAAG
TGCCTCAGTAAGCGCACATACATGAACACAGTGTCAGTGTCTTTGCAGAC
ATACCTACAAAGTCAGCCATAGGTGCCAAAGTGCACAAAGCAGTTGGTCC
CAAATTGCAAGAGTAGGATGCCCGGCAGCAGATGCAGCCACATGCTGTGA
TAAGTACTGGCTTGCACATGACACAGGCGAAGAACACACATTGGTTGGAA
CACATGGCAGTTGCATGCTCATTGCCGCTTGCACGCTTGCCAGTTACGGC
AGTTACACTGGTAGCCAGGCTTCTCTTTTAACAGCTCATAACTGGCGTCA
GCCTTCTACTGCATTGATCACCTCGATGTCTACCTCTGGCGGTGTGGAGC
AACATGCTTGTGAACACCAGCTCTTGAAATTGCATCAACATGGAAGTATA
GCACTGAACATGGAACTACTGGCCATTCAAGTCACTGCGGTTGAACTACA
CTTGTTGCGGTGCTGAAGTACCAGCTCTTTCTTGGAGAAAGAATAAAAAG
TCTCATGTGGTGCAAACGAACAGAAGAGCAGGCTGCAAACTGTAGCAGGC
GTACAACTCCAAGTTGAAGCCATCGCACTTAAGTGCGTGAAGATACAGCT
TCAAAGTGGACAGAAGTTTGCACATGGGCATATGCTATACTTGAAGTATG
TGTACAAGCATACATTGCCACTGTGTGACTATATATACTTATTATTACTT
CAGAAATATAAGTTTGGGTAGCGAGGCGATTTCAACGCAGCAGGGTCGTC
GGAAAAGGGATTTGACTCGGTATTGCTGAGGCTGCCATGATCACTTCAAC
AATGGTGCTGCCGTACCAAGCAGCAGTATGCTTGCGTATTTGACCATTTT
TGAGGTGAACGCCACCCTGTCAGAACTGACCAGCTTTTGTGATGACCCTG
CACTGCAGCTTGAGACAGCAAAACACGACACAGAACAATTCAGGTAGCAG
CAGTGCCACATGGACAAAAGCATACTATTTACTGATTGTCTGCAGGGCAT
CAAGTTTGCTATAGCAGAGGTTTTATTGAAGTGTATGCTTTGAAGTAATG
TTGGAGCCTTCATGAGCCATCCTTCAGGCCTTCAGGCAAGCGAGAGATCC
AGGGTGTTAAACGGCCTAAAATCACGTTATTCTAATGTATACTGTTGGCT
GTTGTGACTGTTTGCAGGGTATCAAGTTTGCAACGCAGTACCACCGGAAG
CGGGGAGTACACGTCACACCCACCGTCTTTATGAACGGGTAAGCGTGGCG
CACATGCGCATAGTGCGTTCAGTATCTGCTCTGTGATTCATGACCAAGTG
CAGATGTTTGGGGTTACCGCTGTCTTATCTTCCAGATGCTTGCACAAGTC
TTTGAAGGGTGCTGCAGTGGTGCCGCTGAAACACTTCTGGAGCGAGGAGT
CGCATGCTGTGACCACGTGTCGTTTCATATGGCATGTTGGCAATTGCCAT
GTACAAGGTACTGGTGAGAGGAGGCTCACGATGTTCACATAACCCTCACC
CTAGCTAGCGCTTCTCAGATGGCACCAAGTAGGTGACTCAAGCTATGCAC
TGGCTGCAGGCCTAGAAACCAATCATTGGCCTCGTTTGAATGCTGAGCAC
AACTGATAGGTATGGCGGTAGTGCAGCGCTAGCTTCACACCAGCAATGTG
TGCATTTACAAAGGCCAGTTGATGTGACACCAGTTTATTCAGTTTCACAC
CAGATGTGACAGTTTATTCACCTGCTTTCATCTACTGGAAAGGTGGTTTT
GTACACAACATGCTACATCATGTTGGGGCTGCAGCTGCAGCAGCAACGAC
CTCTAACTTGCAGACAAATGCAGGCAGCTGCCTTCATCCTAAGTCTTGAA
GTGCGGATGTTGCTGTCATCCACATTATGATTCTTCAAGTACTTGAAGTT
TACAGAGAGGCATCATGTCCACACAGTTGTGTTTTGCAGTCCTGAATATA
AAAACCTTGTCTTCCCTTGCTGCAGCATTGAAAACGGAGCCATTTCAAGT
TCAGCAACTGTGGATGAGTGGAAGGAGACGCTAGATGCACTGGTGGCTGC
CTAAGGTTCAACTTCAGAGCCATGCCTCAAGTTAGGGTAGG
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Coding sequence (CDS) from alignment at Contig_147:245445..251185-

>mRNA_16829 ID=mRNA_16829|Name=jgi.p|Trimin1|353168|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=747bp|location=Sequence derived from alignment at Contig_147:245445..251185- (Tribonema minus UTEX_B_3156 )
ATGCTCCGAGTCTTTCTGCTGACTGTCGTATTTGCAACATATGTGCAATC
TTCAGCTGGTTTCATCGCGGGTGCCAAGGGCGCTGCGGCGGTCTGGCTGA
GGAGGCCCGCTGTTATAAGCAGGCAGCACCGGCTCTCTATGATGGCTCCC
AACCTGCCGCCTGCGCCTCTGGGCTACACCATGCCGCACTCTTCGGCGTC
ACCGAAAGTGCAGGTTGACTTCTTCTTCGACCTGGCCTGCCCTTTCGCAG
GCCGGATGTACCTGACGCTGCAGAAGGTGCTGCCGCTGTATGAGGGCAAG
GGTGTCCTATGGAAGATGTACCACGTGCCACAACCGTGGCATCCGCAGAG
CACCCTCATGCATGAGGCTGCACTGGCGGTCAACACCGTCAAGCCGGAGG
CGTTTTTTGACTTCTGCCATGCGGTGTGGACACAGCGCGAAGAGAAGTTC
ATTGATGATGTAACTGTCGACAAGACTCGCAATCAGATCTACGACGTGCT
GGCGGAAATAGCAGCGGAAGTGGGGGTGGAAAAGGAGGCAGTGAGGCAGA
AACTGGAGCTGAAGGCGCTGGGGAACATGGGCACGCACATGACCCAGGGT
ATCAAGTTTGCAACGCAGTACCACCGGAAGCGGGGAGTACACGTCACACC
CACCGTCTTTATGAACGGCATTGAAAACGGAGCCATTTCAAGTTCAGCAA
CTGTGGATGAGTGGAAGGAGACGCTAGATGCACTGGTGGCTGCCTAA
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