Homology
BLAST of jgi.p|Trimin1|353162 vs. uniprot
Match: A0A835ZDD7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD7_9STRA) HSP 1 Score: 799 bits (2063), Expect = 4.890e-290 Identity = 431/431 (100.00%), Postives = 431/431 (100.00%), Query Frame = 1 Query: 1 MAWITVLESYGRLGKQSDRIRRERRELQRGAQQVSGAVEEELAELEELPGLAEIEALRLVEEVVAAATFARNVEQGCGVSIGALRMILERQEQXXXXXXXXAANAFITPPRRPQGTVRMHPATAPTQSFWQLLQGGNVQRALHNWQYGSRCFGTDGLRLNHLQLSASQRDTAAPLPATSAAQHGHPPAAQWSVTDSAAPLLLSDALTILNEIFIGMRDLVHGGAQAPGAAGPYALVDLTATPRCLFLDAATAPLKPLLAVGQAQRFATGCALDPRGAEGSSAQYIIQSAVDDVHGVLERFHSAVMAWAHRHFPNTAVPWALPPSVILDFGPTSLRFEQLVRNAEVLKNQAVAMVASATAAKRLAAHNRPGTDDRNVRSRLMAPAADGGGGXXXXXXXXXXXXGITRNDLRARGACINHYAERPCLSDTCPY 1293
MAWITVLESYGRLGKQSDRIRRERRELQRGAQQVSGAVEEELAELEELPGLAEIEALRLVEEVVAAATFARNVEQGCGVSIGALRMILERQEQXXXXXXXXAANAFITPPRRPQGTVRMHPATAPTQSFWQLLQGGNVQRALHNWQYGSRCFGTDGLRLNHLQLSASQRDTAAPLPATSAAQHGHPPAAQWSVTDSAAPLLLSDALTILNEIFIGMRDLVHGGAQAPGAAGPYALVDLTATPRCLFLDAATAPLKPLLAVGQAQRFATGCALDPRGAEGSSAQYIIQSAVDDVHGVLERFHSAVMAWAHRHFPNTAVPWALPPSVILDFGPTSLRFEQLVRNAEVLKNQAVAMVASATAAKRLAAHNRPGTDDRNVRSRLMAPAADGGGGXXXXXXXXXXXXGITRNDLRARGACINHYAERPCLSDTCPY
Sbjct: 1 MAWITVLESYGRLGKQSDRIRRERRELQRGAQQVSGAVEEELAELEELPGLAEIEALRLVEEVVAAATFARNVEQGCGVSIGALRMILERQEQXXXXXXXXAANAFITPPRRPQGTVRMHPATAPTQSFWQLLQGGNVQRALHNWQYGSRCFGTDGLRLNHLQLSASQRDTAAPLPATSAAQHGHPPAAQWSVTDSAAPLLLSDALTILNEIFIGMRDLVHGGAQAPGAAGPYALVDLTATPRCLFLDAATAPLKPLLAVGQAQRFATGCALDPRGAEGSSAQYIIQSAVDDVHGVLERFHSAVMAWAHRHFPNTAVPWALPPSVILDFGPTSLRFEQLVRNAEVLKNQAVAMVASATAAKRLAAHNRPGTDDRNVRSRLMAPAADGGGGXXXXXXXXXXXXGITRNDLRARGACINHYAERPCLSDTCPY 431
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|353162|estExt_Genemark1.C_Ctg_1470008 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 353484 |
| Track | FilteredModels1 |
| ProteinId | 353162 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16815 ID=mRNA_16815|Name=jgi.p|Trimin1|353162|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1477bp|location=Sequence derived from alignment at Contig_147:90326..93070+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGGCGTGGATTACCGTCCTGGAGTCATACGGACGGCTGGGCAAGCAGTC
GGACAGGATTCGACGCGAGCGGCGAGAGCTGCAGCGAGGGGCCCAGCAGG
TGTCAGGGGCCGTGGAGGAGGAGCTGGCAGAGCTCGAGGAGCTGCCAGGG
CTGGCAGAGATAGAGGCGCTGCGGCTGGTAGAGGAAGTTGTAGCAGCTGC
CACCTTCGCGCGGAACGTGGAGCAGGGGTGTGGGGTATCCATCGGTGCGC
TTCGGATGATACTGGAGCGGCAGGAGCAGCAGGAGAGGCAGCCAGCGCAA
CCTGCGGCCAACGCGTTCATCACCCCTCCTCGTCGTCCACAGGGCACCGT
TCGCATGCATCCAGCCACGGCGCCCACGCAAAGCTTCTGGCAGCTGCTGC
AGGGCGGGAACGTGCAGCGCGCTCTCCACAACTGGCAGTATGGCAGCAGG
TGCTTCGGCACCGACGGCCTACGCCTCAACCACCTGCAGCTTTCGGCGTC
GCAAAGAGACACTGCCGCGCCCCTGCCTGCCACCTCGGCAGCGCAGCACG
GCCATCCACCAGCGGCGCAGTGGAGTGTGACGGATTCGGCTGCCCCGCTG
CTGCTGAGCGACGCCCTGACCATTCTCAACGAAATCTTCATCGGCATGCG
CGATCTGGTGCACGGCGGAGCACAGGCGCCAGGAGCTGCGGGGCCGTACG
CGCTTGTGGACCTCACGGCCACGCCACGCTGCCTGTTTCTTGACGCAGCC
ACCGCGCCCTTAAAGCCGCTGCTGGCGGTGGGCCAGGCGCAGCGGTTCGC
CACAGGATGCGCGCTAGACCCTCGCGGTGCGGAGGGCAGCTCGGCGCAGT
ACATCATCCAGTCCGCCGTCGACGACGTGCACGGCGTGCTGGAGCGGTTC
CACAGCGCCGTGATGGCGTGGGCACACCGCCATTTCCCCAACACCGCGGT
GCCATGGGCACTTCCCCCGAGCGTCATACTTGACTTCGGCCCGACGTCGC
TGCGCTTCGAGCAGCTCGTGCGCAACGCGGAGGTGCTGAAGAACCAGGCA
GTCGCCATGGTAGCTTCAGCCACCGCCGCCAAGCGCCTGGCCGCTCACAA
CCGCCCGGGCACTGACGACCGCAATGTGCGGTCTCGCCTCATGGCACCCG
CCGCCGACGGCGGCGGCGGGGACGGAGGCGGTAGCGGCTGGGGCGGCAGC
GGCTATGGGATCACCCGCAACGACCTGCGGGCACGTGGTGCGTGCATCAA
CCACTATGCCGAGAGGCCATGCCTCAGCGACACCTGCCCCTACTAGTAGT
ACATTCACATCAAGCCCGGAATGGCGCTTCCCCCGCTGCGGCGCCCGCGC
GCCTTCGCGAGCGGGGGGGACTTGGGAGTGTCGGAGTCTGCGGTAGCGGC
CAGCGAGGAGTGACCACCGCGACAGCGCCGGGCCAAGCAACCTAGGTCAG
CCTGCACCGTACCGCTTAGCCCCCCCC back to topprotein sequence of jgi.p|Trimin1|353162 >Trimin1|353162|estExt_Genemark1.C_Ctg_1470008 ID=Trimin1|353162|estExt_Genemark1.C_Ctg_1470008|Name=jgi.p|Trimin1|353162|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=432bp
MAWITVLESYGRLGKQSDRIRRERRELQRGAQQVSGAVEEELAELEELPG
LAEIEALRLVEEVVAAATFARNVEQGCGVSIGALRMILERQEQQERQPAQ
PAANAFITPPRRPQGTVRMHPATAPTQSFWQLLQGGNVQRALHNWQYGSR
CFGTDGLRLNHLQLSASQRDTAAPLPATSAAQHGHPPAAQWSVTDSAAPL
LLSDALTILNEIFIGMRDLVHGGAQAPGAAGPYALVDLTATPRCLFLDAA
TAPLKPLLAVGQAQRFATGCALDPRGAEGSSAQYIIQSAVDDVHGVLERF
HSAVMAWAHRHFPNTAVPWALPPSVILDFGPTSLRFEQLVRNAEVLKNQA
VAMVASATAAKRLAAHNRPGTDDRNVRSRLMAPAADGGGGDGGGSGWGGS
GYGITRNDLRARGACINHYAERPCLSDTCPY* back to topmRNA from alignment at Contig_147:90326..93070+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_16815 ID=mRNA_16815|Name=jgi.p|Trimin1|353162|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2745bp|location=Sequence derived from alignment at Contig_147:90326..93070+ (Tribonema minus UTEX_B_3156 )
ATGGCGTGGATTACCGTGCCGCCAATTGCCAATGTTTGCCCCGGTGCGGC
GCCCAATGTCCAGCATGGCAGCAGCCACGATGATCTTGGTTGCAATATTT
ATAGACGGGTGGGGCATACTATGTAGTACAGGGCGAGGTGTGCCTATGGT
GGTGCAGCCACCTCCGTGCACGCACAGCTGGCCCAGCCAGCACACTGTGG
CATACGGGGGCACAACGCGACGCACACGCCCAAAAACGGTGCAGCGCATC
TTGAGACAGCACCATTTCTCTGTCGTCCGCAATGACTCAGAGGACGCAAG
CGTCTTCAAGGTACCAGGGTATCTGGCGGACACAGTCATCGACCCACTTG
CACGGTGTCTGCACTTTTAACAGCGCATACCACAACAAGGGAATAGTGCT
AGTAGACAGAAGTGTGCGTGCACCCACGGCAAGCTCGTACTTGACAGGCA
CAATGACACGTTAAATGCCTCGAACACCGTGACGGATGGATATGCTGCTG
GGGTGGGGGAGGGCGCAAAGGTCAAACACCACTGTGACACCGACACCTGG
ATGTCATCTTTGGCCCCGGGGCCTTTGTGCCATTCGTGCAGGTCCTGGAG
TCATACGGACGGCTGGGCAAGCAGTCGGACAGGATTGTCAAGGAATCGGC
AATGCAGTGCACTTGGCACTGTGCTCAGGCGGGGGTTAGGCAGATGTGCT
GCGCTAGGCCGGGCTTGCTAAGCGCGCGCGTCAGATCCTTATTCAATCTG
AGCTGAGTATGTCGTTGGCGGGGTTGTTGGCAGAGCGCATCATCATATTA
TAATGATACACTATGTAACGTTTTACTAGTCATTACTTTAAGTTATTTAT
TATAGTACTTCATTTACTTCCGCTTGAGGGGCAGAAACTCAGAGTTTTCG
GCAATTTCGGAAAAAGTTGGGGCCAAAAACCAGGAACCAGCAAGGGGCAC
AGAAAGGGGGAGGCGAGCGTGGCAGCCATTCACATTCTGCTAGGCCGCAC
AAGGCCAAGCTCTCGTAGATATGGCAACACCAGCCAGGTAGCCAGCACTG
TTGCCTATCTGCTCAACTTAATCAAAATGGAACGAGCGACGCGAGCGGCG
AGAGCTGCAGCGAGGGGCCCAGCAGGTGTCAGGGGCCGTGGAGGAGGAGC
TGGCAGAGCTCGAGGAGCTGCCAGGGCTGGCAGAGATAGAGGCGCTGCGG
CTGGTAGAGGTCGAGGCGCAGCTGCTGCTGCTGCGAATGCCGCACCACCC
GCAGTTGCCAACGCCATGGCAGTTGTTGCGCTGGCAGCTGCACAAATCGA
CGCGAAGCCTGAGCCTAATCTGCTAGCTGAGGAAGTTGTAGCAGCTGCCA
CCTTCGCGCGGAACGTGGAGCAGGGGTGTGGGGTATCCATCGGTGCGCTT
CGGATGATACTGGAGCGGCAGGAGCAGCAGGAGAGGCAGCCAGCGCAACC
TGCGGCCAACGCGTTCATCACCCCTCCTCGTCGTCCACAGGGCACCGTTC
GCATGCATCCAGCCACGGCGCCCACGCAAAGCTTCTGGCAGCTGCTGCAG
GGCGGGAACGTGGTGCTGCCGCCCATCTGCGGCGACACGTCCATCTTCTA
CGGCTCTCTAATTTATTGAGGGATTTATTTTTATTGAGGGGATTTCCTAT
ACAGGTGCATGACACCTCTTGCCCCGGCACAGCAGCGCGCTCTCCACAAC
TGGCAGTATGGCAGCAGGTGCTTCGGCACCGACGGCCTACGCCTCAACCA
CCTGCAGCTTTCGGCGTCGCAAAGAGACACTGCCGCGCCCCTGCCTGCCA
CCTCGGCAGCGCAGCACGGCCATCCACCAGCGGCGCAGTGGAGTGTGACG
GATTCGGCTGCCCCGCTGCTGCTGAGCGACGCCCTGACCATTCTCAACGA
AATCTTCATCGGCATGCGCGATCTGGTGCACGGCGGAGCACAGGCGCCAG
GAGCTGCGGGGCCGTACGCGCTTGTGGACCTCACGGCCACGCCACGCTGC
CTGTTTCTTGACGCAGCCACCGCGCCCTTAAAGCCGCTGCTGGCGGTGGG
CCAGGCGCAGCGGTTCGCCACAGGATGCGCGCTAGACCCTCGCGGTGCGG
AGGGCAGCTCGGCGCAGTACATCATCCAGTCCGCCGTCGACGACGTGCAC
GGCGTGCTGGAGCGGTTCCACAGCGCCGTGATGGCGTGGGCACACCGCCA
TTTCCCCAACACCGCGGTGCCATGGGCACTTCCCCCGAGCGTCATACTTG
ACTTCGGCCCGACGTCGCTGCGCTTCGAGCAGCTCGTGCGCAACGCGGAG
GTGCTGAAGAACCAGGCAGTCGCCATGGTAGCTTCAGCCACCGCCGCCAA
GCGCCTGGCCGCTCACAACCGCCCGGGCACTGACGACCGCAATGTGCGGT
CTCGCCTCATGGCACCCGCCGCCGACGGCGGCGGCGGGGACGGAGGCGGT
AGCGGCTGGGGCGGCAGCGGCTATGGGATCACCCGCAACGACCTGCGGGC
ACGTGGTGCGTGCATCAACCACTATGCCGAGAGGCCATGCCTCAGCGACA
CCTGCCCCTACTAGTAGTACATTCACATCAAGCCCGGAATGGCGCTTCCC
CCGCTGCGGCGCCCGCGCGCCTTCGCGAGCGGGGGGGACTTGGGAGTGTC
GGAGTCTGCGGTAGCGGCCAGCGAGGAGTGACCACCGCGACAGCGCCGGG
CCAAGCAACCTAGGTCAGCCTGCACCGTACCGCTTAGCCCCCCCC back to topCoding sequence (CDS) from alignment at Contig_147:90326..93070+ >mRNA_16815 ID=mRNA_16815|Name=jgi.p|Trimin1|353162|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1296bp|location=Sequence derived from alignment at Contig_147:90326..93070+ (Tribonema minus UTEX_B_3156 )
ATGGCGTGGATTACCGTCCTGGAGTCATACGGACGGCTGGGCAAGCAGTC
GGACAGGATTCGACGCGAGCGGCGAGAGCTGCAGCGAGGGGCCCAGCAGG
TGTCAGGGGCCGTGGAGGAGGAGCTGGCAGAGCTCGAGGAGCTGCCAGGG
CTGGCAGAGATAGAGGCGCTGCGGCTGGTAGAGGAAGTTGTAGCAGCTGC
CACCTTCGCGCGGAACGTGGAGCAGGGGTGTGGGGTATCCATCGGTGCGC
TTCGGATGATACTGGAGCGGCAGGAGCAGCAGGAGAGGCAGCCAGCGCAA
CCTGCGGCCAACGCGTTCATCACCCCTCCTCGTCGTCCACAGGGCACCGT
TCGCATGCATCCAGCCACGGCGCCCACGCAAAGCTTCTGGCAGCTGCTGC
AGGGCGGGAACGTGCAGCGCGCTCTCCACAACTGGCAGTATGGCAGCAGG
TGCTTCGGCACCGACGGCCTACGCCTCAACCACCTGCAGCTTTCGGCGTC
GCAAAGAGACACTGCCGCGCCCCTGCCTGCCACCTCGGCAGCGCAGCACG
GCCATCCACCAGCGGCGCAGTGGAGTGTGACGGATTCGGCTGCCCCGCTG
CTGCTGAGCGACGCCCTGACCATTCTCAACGAAATCTTCATCGGCATGCG
CGATCTGGTGCACGGCGGAGCACAGGCGCCAGGAGCTGCGGGGCCGTACG
CGCTTGTGGACCTCACGGCCACGCCACGCTGCCTGTTTCTTGACGCAGCC
ACCGCGCCCTTAAAGCCGCTGCTGGCGGTGGGCCAGGCGCAGCGGTTCGC
CACAGGATGCGCGCTAGACCCTCGCGGTGCGGAGGGCAGCTCGGCGCAGT
ACATCATCCAGTCCGCCGTCGACGACGTGCACGGCGTGCTGGAGCGGTTC
CACAGCGCCGTGATGGCGTGGGCACACCGCCATTTCCCCAACACCGCGGT
GCCATGGGCACTTCCCCCGAGCGTCATACTTGACTTCGGCCCGACGTCGC
TGCGCTTCGAGCAGCTCGTGCGCAACGCGGAGGTGCTGAAGAACCAGGCA
GTCGCCATGGTAGCTTCAGCCACCGCCGCCAAGCGCCTGGCCGCTCACAA
CCGCCCGGGCACTGACGACCGCAATGTGCGGTCTCGCCTCATGGCACCCG
CCGCCGACGGCGGCGGCGGGGACGGAGGCGGTAGCGGCTGGGGCGGCAGC
GGCTATGGGATCACCCGCAACGACCTGCGGGCACGTGGTGCGTGCATCAA
CCACTATGCCGAGAGGCCATGCCTCAGCGACACCTGCCCCTACTAG back to top
|