mRNA_16815 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|353162
Unique Name	mRNA_16815
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|353162 vs. uniprot
Match: A0A835ZDD7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD7_9STRA)

HSP 1 Score: 799 bits (2063), Expect = 4.890e-290
Identity = 431/431 (100.00%), Postives = 431/431 (100.00%), Query Frame = 1

Query:    1 MAWITVLESYGRLGKQSDRIRRERRELQRGAQQVSGAVEEELAELEELPGLAEIEALRLVEEVVAAATFARNVEQGCGVSIGALRMILERQEQXXXXXXXXAANAFITPPRRPQGTVRMHPATAPTQSFWQLLQGGNVQRALHNWQYGSRCFGTDGLRLNHLQLSASQRDTAAPLPATSAAQHGHPPAAQWSVTDSAAPLLLSDALTILNEIFIGMRDLVHGGAQAPGAAGPYALVDLTATPRCLFLDAATAPLKPLLAVGQAQRFATGCALDPRGAEGSSAQYIIQSAVDDVHGVLERFHSAVMAWAHRHFPNTAVPWALPPSVILDFGPTSLRFEQLVRNAEVLKNQAVAMVASATAAKRLAAHNRPGTDDRNVRSRLMAPAADGGGGXXXXXXXXXXXXGITRNDLRARGACINHYAERPCLSDTCPY 1293
            MAWITVLESYGRLGKQSDRIRRERRELQRGAQQVSGAVEEELAELEELPGLAEIEALRLVEEVVAAATFARNVEQGCGVSIGALRMILERQEQXXXXXXXXAANAFITPPRRPQGTVRMHPATAPTQSFWQLLQGGNVQRALHNWQYGSRCFGTDGLRLNHLQLSASQRDTAAPLPATSAAQHGHPPAAQWSVTDSAAPLLLSDALTILNEIFIGMRDLVHGGAQAPGAAGPYALVDLTATPRCLFLDAATAPLKPLLAVGQAQRFATGCALDPRGAEGSSAQYIIQSAVDDVHGVLERFHSAVMAWAHRHFPNTAVPWALPPSVILDFGPTSLRFEQLVRNAEVLKNQAVAMVASATAAKRLAAHNRPGTDDRNVRSRLMAPAADGGGGXXXXXXXXXXXXGITRNDLRARGACINHYAERPCLSDTCPY
Sbjct:    1 MAWITVLESYGRLGKQSDRIRRERRELQRGAQQVSGAVEEELAELEELPGLAEIEALRLVEEVVAAATFARNVEQGCGVSIGALRMILERQEQXXXXXXXXAANAFITPPRRPQGTVRMHPATAPTQSFWQLLQGGNVQRALHNWQYGSRCFGTDGLRLNHLQLSASQRDTAAPLPATSAAQHGHPPAAQWSVTDSAAPLLLSDALTILNEIFIGMRDLVHGGAQAPGAAGPYALVDLTATPRCLFLDAATAPLKPLLAVGQAQRFATGCALDPRGAEGSSAQYIIQSAVDDVHGVLERFHSAVMAWAHRHFPNTAVPWALPPSVILDFGPTSLRFEQLVRNAEVLKNQAVAMVASATAAKRLAAHNRPGTDDRNVRSRLMAPAADGGGGXXXXXXXXXXXXGITRNDLRARGACINHYAERPCLSDTCPY 431

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353162 vs. uniprot

BLAST of jgi.p|Trimin1|353162 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZDD7_9STRA	4.890e-290	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_147	contig	Contig_147:90326..93070 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|353162\|estExt_Genemark1.C_Ctg_1470008
Hectar predicted targeting category	other localisation
TranscriptId	353484
Track	FilteredModels1
ProteinId	353162

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353162	gene_16815	Tribonema minus UTEX_B_3156	gene	Contig_147 90326..93070 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353162	Trimin1\|353162\|estExt_Genemark1.C_Ctg_1470008	Tribonema minus UTEX_B_3156	polypeptide	Contig_147 90326..92889 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_16815_1	exon_16815_1	Tribonema minus UTEX_B_3156	exon	Contig_147 90326..90340 +
exon_16815_2	exon_16815_2	Tribonema minus UTEX_B_3156	exon	Contig_147 90917..90961 +
exon_16815_3	exon_16815_3	Tribonema minus UTEX_B_3156	exon	Contig_147 91412..91534 +
exon_16815_4	exon_16815_4	Tribonema minus UTEX_B_3156	exon	Contig_147 91657..91887 +
exon_16815_5	exon_16815_5	Tribonema minus UTEX_B_3156	exon	Contig_147 92008..93070 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_16815	CDS_16815	Tribonema minus UTEX_B_3156	CDS	Contig_147 90326..90340 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_16815	UTR3_16815	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_147 92890..93070 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_147:90326..93070+
coding sequence from alignment at Contig_147:90326..93070+

spliced messenger RNA

>mRNA_16815 ID=mRNA_16815|Name=jgi.p|Trimin1|353162|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1477bp|location=Sequence derived from alignment at Contig_147:90326..93070+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTGGATTACCGTCCTGGAGTCATACGGACGGCTGGGCAAGCAGTC
GGACAGGATTCGACGCGAGCGGCGAGAGCTGCAGCGAGGGGCCCAGCAGG
TGTCAGGGGCCGTGGAGGAGGAGCTGGCAGAGCTCGAGGAGCTGCCAGGG
CTGGCAGAGATAGAGGCGCTGCGGCTGGTAGAGGAAGTTGTAGCAGCTGC
CACCTTCGCGCGGAACGTGGAGCAGGGGTGTGGGGTATCCATCGGTGCGC
TTCGGATGATACTGGAGCGGCAGGAGCAGCAGGAGAGGCAGCCAGCGCAA
CCTGCGGCCAACGCGTTCATCACCCCTCCTCGTCGTCCACAGGGCACCGT
TCGCATGCATCCAGCCACGGCGCCCACGCAAAGCTTCTGGCAGCTGCTGC
AGGGCGGGAACGTGCAGCGCGCTCTCCACAACTGGCAGTATGGCAGCAGG
TGCTTCGGCACCGACGGCCTACGCCTCAACCACCTGCAGCTTTCGGCGTC
GCAAAGAGACACTGCCGCGCCCCTGCCTGCCACCTCGGCAGCGCAGCACG
GCCATCCACCAGCGGCGCAGTGGAGTGTGACGGATTCGGCTGCCCCGCTG
CTGCTGAGCGACGCCCTGACCATTCTCAACGAAATCTTCATCGGCATGCG
CGATCTGGTGCACGGCGGAGCACAGGCGCCAGGAGCTGCGGGGCCGTACG
CGCTTGTGGACCTCACGGCCACGCCACGCTGCCTGTTTCTTGACGCAGCC
ACCGCGCCCTTAAAGCCGCTGCTGGCGGTGGGCCAGGCGCAGCGGTTCGC
CACAGGATGCGCGCTAGACCCTCGCGGTGCGGAGGGCAGCTCGGCGCAGT
ACATCATCCAGTCCGCCGTCGACGACGTGCACGGCGTGCTGGAGCGGTTC
CACAGCGCCGTGATGGCGTGGGCACACCGCCATTTCCCCAACACCGCGGT
GCCATGGGCACTTCCCCCGAGCGTCATACTTGACTTCGGCCCGACGTCGC
TGCGCTTCGAGCAGCTCGTGCGCAACGCGGAGGTGCTGAAGAACCAGGCA
GTCGCCATGGTAGCTTCAGCCACCGCCGCCAAGCGCCTGGCCGCTCACAA
CCGCCCGGGCACTGACGACCGCAATGTGCGGTCTCGCCTCATGGCACCCG
CCGCCGACGGCGGCGGCGGGGACGGAGGCGGTAGCGGCTGGGGCGGCAGC
GGCTATGGGATCACCCGCAACGACCTGCGGGCACGTGGTGCGTGCATCAA
CCACTATGCCGAGAGGCCATGCCTCAGCGACACCTGCCCCTACTAGTAGT
ACATTCACATCAAGCCCGGAATGGCGCTTCCCCCGCTGCGGCGCCCGCGC
GCCTTCGCGAGCGGGGGGGACTTGGGAGTGTCGGAGTCTGCGGTAGCGGC
CAGCGAGGAGTGACCACCGCGACAGCGCCGGGCCAAGCAACCTAGGTCAG
CCTGCACCGTACCGCTTAGCCCCCCCC

protein sequence of jgi.p|Trimin1|353162

>Trimin1|353162|estExt_Genemark1.C_Ctg_1470008 ID=Trimin1|353162|estExt_Genemark1.C_Ctg_1470008|Name=jgi.p|Trimin1|353162|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=432bp
MAWITVLESYGRLGKQSDRIRRERRELQRGAQQVSGAVEEELAELEELPG
LAEIEALRLVEEVVAAATFARNVEQGCGVSIGALRMILERQEQQERQPAQ
PAANAFITPPRRPQGTVRMHPATAPTQSFWQLLQGGNVQRALHNWQYGSR
CFGTDGLRLNHLQLSASQRDTAAPLPATSAAQHGHPPAAQWSVTDSAAPL
LLSDALTILNEIFIGMRDLVHGGAQAPGAAGPYALVDLTATPRCLFLDAA
TAPLKPLLAVGQAQRFATGCALDPRGAEGSSAQYIIQSAVDDVHGVLERF
HSAVMAWAHRHFPNTAVPWALPPSVILDFGPTSLRFEQLVRNAEVLKNQA
VAMVASATAAKRLAAHNRPGTDDRNVRSRLMAPAADGGGGDGGGSGWGGS
GYGITRNDLRARGACINHYAERPCLSDTCPY*

mRNA from alignment at Contig_147:90326..93070+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_16815 ID=mRNA_16815|Name=jgi.p|Trimin1|353162|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2745bp|location=Sequence derived from alignment at Contig_147:90326..93070+ (Tribonema minus UTEX_B_3156 )
ATGGCGTGGATTACCGTGCCGCCAATTGCCAATGTTTGCCCCGGTGCGGC
GCCCAATGTCCAGCATGGCAGCAGCCACGATGATCTTGGTTGCAATATTT
ATAGACGGGTGGGGCATACTATGTAGTACAGGGCGAGGTGTGCCTATGGT
GGTGCAGCCACCTCCGTGCACGCACAGCTGGCCCAGCCAGCACACTGTGG
CATACGGGGGCACAACGCGACGCACACGCCCAAAAACGGTGCAGCGCATC
TTGAGACAGCACCATTTCTCTGTCGTCCGCAATGACTCAGAGGACGCAAG
CGTCTTCAAGGTACCAGGGTATCTGGCGGACACAGTCATCGACCCACTTG
CACGGTGTCTGCACTTTTAACAGCGCATACCACAACAAGGGAATAGTGCT
AGTAGACAGAAGTGTGCGTGCACCCACGGCAAGCTCGTACTTGACAGGCA
CAATGACACGTTAAATGCCTCGAACACCGTGACGGATGGATATGCTGCTG
GGGTGGGGGAGGGCGCAAAGGTCAAACACCACTGTGACACCGACACCTGG
ATGTCATCTTTGGCCCCGGGGCCTTTGTGCCATTCGTGCAGGTCCTGGAG
TCATACGGACGGCTGGGCAAGCAGTCGGACAGGATTGTCAAGGAATCGGC
AATGCAGTGCACTTGGCACTGTGCTCAGGCGGGGGTTAGGCAGATGTGCT
GCGCTAGGCCGGGCTTGCTAAGCGCGCGCGTCAGATCCTTATTCAATCTG
AGCTGAGTATGTCGTTGGCGGGGTTGTTGGCAGAGCGCATCATCATATTA
TAATGATACACTATGTAACGTTTTACTAGTCATTACTTTAAGTTATTTAT
TATAGTACTTCATTTACTTCCGCTTGAGGGGCAGAAACTCAGAGTTTTCG
GCAATTTCGGAAAAAGTTGGGGCCAAAAACCAGGAACCAGCAAGGGGCAC
AGAAAGGGGGAGGCGAGCGTGGCAGCCATTCACATTCTGCTAGGCCGCAC
AAGGCCAAGCTCTCGTAGATATGGCAACACCAGCCAGGTAGCCAGCACTG
TTGCCTATCTGCTCAACTTAATCAAAATGGAACGAGCGACGCGAGCGGCG
AGAGCTGCAGCGAGGGGCCCAGCAGGTGTCAGGGGCCGTGGAGGAGGAGC
TGGCAGAGCTCGAGGAGCTGCCAGGGCTGGCAGAGATAGAGGCGCTGCGG
CTGGTAGAGGTCGAGGCGCAGCTGCTGCTGCTGCGAATGCCGCACCACCC
GCAGTTGCCAACGCCATGGCAGTTGTTGCGCTGGCAGCTGCACAAATCGA
CGCGAAGCCTGAGCCTAATCTGCTAGCTGAGGAAGTTGTAGCAGCTGCCA
CCTTCGCGCGGAACGTGGAGCAGGGGTGTGGGGTATCCATCGGTGCGCTT
CGGATGATACTGGAGCGGCAGGAGCAGCAGGAGAGGCAGCCAGCGCAACC
TGCGGCCAACGCGTTCATCACCCCTCCTCGTCGTCCACAGGGCACCGTTC
GCATGCATCCAGCCACGGCGCCCACGCAAAGCTTCTGGCAGCTGCTGCAG
GGCGGGAACGTGGTGCTGCCGCCCATCTGCGGCGACACGTCCATCTTCTA
CGGCTCTCTAATTTATTGAGGGATTTATTTTTATTGAGGGGATTTCCTAT
ACAGGTGCATGACACCTCTTGCCCCGGCACAGCAGCGCGCTCTCCACAAC
TGGCAGTATGGCAGCAGGTGCTTCGGCACCGACGGCCTACGCCTCAACCA
CCTGCAGCTTTCGGCGTCGCAAAGAGACACTGCCGCGCCCCTGCCTGCCA
CCTCGGCAGCGCAGCACGGCCATCCACCAGCGGCGCAGTGGAGTGTGACG
GATTCGGCTGCCCCGCTGCTGCTGAGCGACGCCCTGACCATTCTCAACGA
AATCTTCATCGGCATGCGCGATCTGGTGCACGGCGGAGCACAGGCGCCAG
GAGCTGCGGGGCCGTACGCGCTTGTGGACCTCACGGCCACGCCACGCTGC
CTGTTTCTTGACGCAGCCACCGCGCCCTTAAAGCCGCTGCTGGCGGTGGG
CCAGGCGCAGCGGTTCGCCACAGGATGCGCGCTAGACCCTCGCGGTGCGG
AGGGCAGCTCGGCGCAGTACATCATCCAGTCCGCCGTCGACGACGTGCAC
GGCGTGCTGGAGCGGTTCCACAGCGCCGTGATGGCGTGGGCACACCGCCA
TTTCCCCAACACCGCGGTGCCATGGGCACTTCCCCCGAGCGTCATACTTG
ACTTCGGCCCGACGTCGCTGCGCTTCGAGCAGCTCGTGCGCAACGCGGAG
GTGCTGAAGAACCAGGCAGTCGCCATGGTAGCTTCAGCCACCGCCGCCAA
GCGCCTGGCCGCTCACAACCGCCCGGGCACTGACGACCGCAATGTGCGGT
CTCGCCTCATGGCACCCGCCGCCGACGGCGGCGGCGGGGACGGAGGCGGT
AGCGGCTGGGGCGGCAGCGGCTATGGGATCACCCGCAACGACCTGCGGGC
ACGTGGTGCGTGCATCAACCACTATGCCGAGAGGCCATGCCTCAGCGACA
CCTGCCCCTACTAGTAGTACATTCACATCAAGCCCGGAATGGCGCTTCCC
CCGCTGCGGCGCCCGCGCGCCTTCGCGAGCGGGGGGGACTTGGGAGTGTC
GGAGTCTGCGGTAGCGGCCAGCGAGGAGTGACCACCGCGACAGCGCCGGG
CCAAGCAACCTAGGTCAGCCTGCACCGTACCGCTTAGCCCCCCCC

Coding sequence (CDS) from alignment at Contig_147:90326..93070+

>mRNA_16815 ID=mRNA_16815|Name=jgi.p|Trimin1|353162|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1296bp|location=Sequence derived from alignment at Contig_147:90326..93070+ (Tribonema minus UTEX_B_3156 )
ATGGCGTGGATTACCGTCCTGGAGTCATACGGACGGCTGGGCAAGCAGTC
GGACAGGATTCGACGCGAGCGGCGAGAGCTGCAGCGAGGGGCCCAGCAGG
TGTCAGGGGCCGTGGAGGAGGAGCTGGCAGAGCTCGAGGAGCTGCCAGGG
CTGGCAGAGATAGAGGCGCTGCGGCTGGTAGAGGAAGTTGTAGCAGCTGC
CACCTTCGCGCGGAACGTGGAGCAGGGGTGTGGGGTATCCATCGGTGCGC
TTCGGATGATACTGGAGCGGCAGGAGCAGCAGGAGAGGCAGCCAGCGCAA
CCTGCGGCCAACGCGTTCATCACCCCTCCTCGTCGTCCACAGGGCACCGT
TCGCATGCATCCAGCCACGGCGCCCACGCAAAGCTTCTGGCAGCTGCTGC
AGGGCGGGAACGTGCAGCGCGCTCTCCACAACTGGCAGTATGGCAGCAGG
TGCTTCGGCACCGACGGCCTACGCCTCAACCACCTGCAGCTTTCGGCGTC
GCAAAGAGACACTGCCGCGCCCCTGCCTGCCACCTCGGCAGCGCAGCACG
GCCATCCACCAGCGGCGCAGTGGAGTGTGACGGATTCGGCTGCCCCGCTG
CTGCTGAGCGACGCCCTGACCATTCTCAACGAAATCTTCATCGGCATGCG
CGATCTGGTGCACGGCGGAGCACAGGCGCCAGGAGCTGCGGGGCCGTACG
CGCTTGTGGACCTCACGGCCACGCCACGCTGCCTGTTTCTTGACGCAGCC
ACCGCGCCCTTAAAGCCGCTGCTGGCGGTGGGCCAGGCGCAGCGGTTCGC
CACAGGATGCGCGCTAGACCCTCGCGGTGCGGAGGGCAGCTCGGCGCAGT
ACATCATCCAGTCCGCCGTCGACGACGTGCACGGCGTGCTGGAGCGGTTC
CACAGCGCCGTGATGGCGTGGGCACACCGCCATTTCCCCAACACCGCGGT
GCCATGGGCACTTCCCCCGAGCGTCATACTTGACTTCGGCCCGACGTCGC
TGCGCTTCGAGCAGCTCGTGCGCAACGCGGAGGTGCTGAAGAACCAGGCA
GTCGCCATGGTAGCTTCAGCCACCGCCGCCAAGCGCCTGGCCGCTCACAA
CCGCCCGGGCACTGACGACCGCAATGTGCGGTCTCGCCTCATGGCACCCG
CCGCCGACGGCGGCGGCGGGGACGGAGGCGGTAGCGGCTGGGGCGGCAGC
GGCTATGGGATCACCCGCAACGACCTGCGGGCACGTGGTGCGTGCATCAA
CCACTATGCCGAGAGGCCATGCCTCAGCGACACCTGCCCCTACTAG