mRNA_1676 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149760
Unique NamemRNA_1676
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|149760 vs. uniprot
Match: A0A835YV99_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV99_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.530e-82
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1
Query:    1 SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALGDACACPLCHVPSAPVACAVYNCVWMFEGVKAGGGAVLSGAWRETGDAYERFNTRAEGESGGGGMADWERLVL 348
            SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALGDACACPLCHVPSAPVACAVYNCVWMFEGVKAGGGAVLSGAWRETGDAYERFNTRAEGESGGGGMADWERLVL
Sbjct:    1 SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALGDACACPLCHVPSAPVACAVYNCVWMFEGVKAGGGAVLSGAWRETGDAYERFNTRAEGESGGGGMADWERLVL 116          
BLAST of jgi.p|Trimin1|149760 vs. uniprot
Match: A0A835ZBV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBV8_9STRA)

HSP 1 Score: 163 bits (413), Expect = 5.890e-48
Identity = 78/115 (67.83%), Postives = 84/115 (73.04%), Query Frame = 1
Query:    4 DTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALGDACACPLCHVPSAPVACAVYNCVWMFEGVKAGGGAVLSGAWRETGDAYERFNTRAEGESGGGGMADWERLVL 348
            D AP WR    G+N E +C    C A GE+VIH VGMGAF LGDACACPLC  P  PV CA ++CVWMFEGVKAGGGA L   WRE GDAYERFNT AEGESGG  M +WERLVL
Sbjct:   77 DDAPKWRVACPGLNAEGVCSTTWCRARGEMVIHEVGMGAFTLGDACACPLCRRPFTPVTCAFHDCVWMFEGVKAGGGAALGSVWREAGDAYERFNTGAEGESGGS-MVEWERLVL 190          
BLAST of jgi.p|Trimin1|149760 vs. uniprot
Match: A0A835YSA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSA3_9STRA)

HSP 1 Score: 162 bits (409), Expect = 3.090e-47
Identity = 75/116 (64.66%), Postives = 88/116 (75.86%), Query Frame = 1
Query:    1 SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALGDACACPLCHVPSAPVACAVYNCVWMFEGVKAGGGAVLSGAWRETGDAYERFNTRAEGESGGGGMADWERLVL 348
            S+TAP WR    G+N+E LC NA+CAA+G++VIH +GMGAFALG ACACPLC  P  P+ CA + CVWMFEGVKA GGA LS AWRE GD+YERFNT  EG S G  M +WER +L
Sbjct:   88 SETAPEWRIACEGLNIEGLCSNAECAAHGQMVIHKIGMGAFALGGACACPLCVAPIVPLTCAFHRCVWMFEGVKADGGASLSTAWREAGDSYERFNTGTEGTSSGA-MVEWERFML 202          
BLAST of jgi.p|Trimin1|149760 vs. uniprot
Match: A0A836CBY2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBY2_9STRA)

HSP 1 Score: 159 bits (403), Expect = 3.120e-46
Identity = 75/116 (64.66%), Postives = 85/116 (73.28%), Query Frame = 1
Query:    1 SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALGDACACPLCHVPSAPVACAVYNCVWMFEGVKAGGGAVLSGAWRETGDAYERFNTRAEGESGGGGMADWERLVL 348
            SDT P WR    G+N+E LC NA+CAA+G++VIH +GMGAF LG ACACPLC  P  P+ CA + CVWMFEGVKA   A LS AWRE GD YERFNT  EG SG G M +WERLVL
Sbjct:   89 SDTGPKWRIACEGLNIEGLCTNAECAAHGKMVIHKIGMGAFTLGGACACPLCDAPIVPLTCAFHRCVWMFEGVKADSCAALSTAWREAGDTYERFNTGTEG-SGSGAMVEWERLVL 203          
BLAST of jgi.p|Trimin1|149760 vs. uniprot
Match: A0A835Z319_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z319_9STRA)

HSP 1 Score: 164 bits (414), Expect = 3.340e-46
Identity = 79/116 (68.10%), Postives = 86/116 (74.14%), Query Frame = 1
Query:    1 SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALGDACACPLCHVPSAPVACAVYNCVWMFEGVKAGGGAVLSGAWRETGDAYERFNTRAEGESGGGGMADWERLVL 348
            S  APAWR    G+NVE +CG   C A G++VI  VGMGAF LGDACACPLC  P APV CA + C WMFEGVKAGGGA L G WRE GDAYERFNT A+GESGG  M +WERLVL
Sbjct:  267 SHNAPAWRVACPGLNVEGVCGTTGCRARGKMVIRGVGMGAFTLGDACACPLCRRPFAPVTCAFHACAWMFEGVKAGGGAALGGVWREAGDAYERFNTGADGESGGS-MVEWERLVL 381          
BLAST of jgi.p|Trimin1|149760 vs. uniprot
Match: A0A835YTW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW7_9STRA)

HSP 1 Score: 163 bits (413), Expect = 4.690e-46
Identity = 79/116 (68.10%), Postives = 84/116 (72.41%), Query Frame = 1
Query:    1 SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALGDACACPLCHVPSAPVACAVYNCVWMFEGVKAGGGAVLSGAWRETGDAYERFNTRAEGESGGGGMADWERLVL 348
            S  APAWR    G+NVE +CG   C A GE+VIH VGMGAF LGDACACPLC  P APV CA   C WMFEGVKAGGG  L G WR  GDAYERFNT A+GESGG  M +WERLVL
Sbjct:  242 SHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGDAYERFNTGADGESGGS-MVEWERLVL 356          
BLAST of jgi.p|Trimin1|149760 vs. uniprot
Match: A0A485LRM1_9STRA (Aste57867_24223 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRM1_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.280e-16
Identity = 46/114 (40.35%), Postives = 57/114 (50.00%), Query Frame = 1
Query:   13 PAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFAL-GDACACPLCHVPSAPVACAVYNCVWMFEGVKAGGGAVLSGAWRE-TGDAYERFNTRAEGESGGGGMADWERLVL 348
            P W  V RG+NVE +C N  C AYG+ V+      AF L      CP CH    P  C  Y C+W FEGV+ G G  LS  WRE +GD Y  F      E+    +A W  L++
Sbjct:  210 PTWLHVCRGLNVEGICENDACEAYGDEVVACHEFNAFNLTAHRACCPSCHTKFVPRTCGFYKCLWRFEGVRHGSGVHLSSEWREASGDLYHLF------EASESNLALWLTLLV 317          
BLAST of jgi.p|Trimin1|149760 vs. uniprot
Match: A0A433Q349_9FUNG (RING-type domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433Q349_9FUNG)

HSP 1 Score: 73.6 bits (179), Expect = 2.520e-13
Identity = 45/124 (36.29%), Postives = 57/124 (45.97%), Query Frame = 1
Query:    1 SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFAL---GDACACPLCHVPSAPVACAVYNCVWMFEGVKAG-----GGAVLSGAWRETGDAYERFNTRAEGESGGGGMADWERLVL 348
            S TAP WR V +G+N+E  C N  C A+   VI       F        C CP+C     P+ C   N  W F G+K+G      G  +S  WR  GDAY  F      + G GG+A W RL +
Sbjct:   61 SKTAPDWRIVTKGLNLEGTCTNDSCPAHNHRVIMKWEQRNFDFQYDSVKCRCPICFESVMPITCGFSNTWWSFRGIKSGTDTSGAGERVSCDWRRAGDAYHVF------DEGKGGVASWSRLKI 178          
BLAST of jgi.p|Trimin1|149760 vs. uniprot
Match: A0A2K1JZS5_PHYPA (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JZS5_PHYPA)

HSP 1 Score: 54.7 bits (130), Expect = 2.820e-6
Identity = 30/76 (39.47%), Postives = 41/76 (53.95%), Query Frame = 1
Query:    1 SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALG-DACACPLCHVPSAPVACAVYNCVWMFEGVKA 225
            S TAP WR V +G+N+E  C N  C   G++VI   G  A  L  +   CP+C        C+  +C+WM+EG KA
Sbjct:  203 SKTAPVWRIVEKGLNLEGKCTNNACPGNGQLVICRKGFVAVNLSKEQGTCPICKQGVQVKTCSFTSCMWMYEGRKA 278          
BLAST of jgi.p|Trimin1|149760 vs. uniprot
Match: A9SDA9_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SDA9_PHYPA)

HSP 1 Score: 54.7 bits (130), Expect = 2.920e-6
Identity = 30/76 (39.47%), Postives = 41/76 (53.95%), Query Frame = 1
Query:    1 SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALG-DACACPLCHVPSAPVACAVYNCVWMFEGVKA 225
            S TAP WR V +G+N+E  C N  C   G++VI   G  A  L  +   CP+C        C+  +C+WM+EG KA
Sbjct:  318 SKTAPVWRIVEKGLNLEGKCTNNACPGNGQLVICRKGFVAVNLSKEQGTCPICKQGVQVKTCSFTSCMWMYEGRKA 393          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149760 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A835YV99_9STRA1.530e-82100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZBV8_9STRA5.890e-4867.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YSA3_9STRA3.090e-4764.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CBY2_9STRA3.120e-4664.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z319_9STRA3.340e-4668.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTW7_9STRA4.690e-4668.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A485LRM1_9STRA5.280e-1640.35Aste57867_24223 protein n=1 Tax=Aphanomyces stella... [more]
A0A433Q349_9FUNG2.520e-1336.29RING-type domain-containing protein n=1 Tax=Jimger... [more]
A0A2K1JZS5_PHYPA2.820e-639.47Uncharacterized protein n=1 Tax=Physcomitrium pate... [more]
A9SDA9_PHYPA2.920e-639.47Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_4contigContig_4:1305722..1306069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149760|gw1.4.327.1
BRITEko00000,ko00001,ko04121
KEGG Pathwayko03320,map03320
KEGG koko:K07059,ko:K08770
Descriptioncellular macromolecule catabolic process
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5272@1|root,KOG0001@2759|Eukaryota
Evalue1.46e-17
Seed ortholog4787.PITG_08480T0
Hectar predicted targeting categoryother localisation
TranscriptId150082
TrackFilteredModels1
ProteinId149760
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149760gene_1676Tribonema minus UTEX_B_3156 geneContig_4 1305722..1306069 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1676_1exon_1676_1Tribonema minus UTEX_B_3156 exonContig_4 1305722..1306069 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1676CDS_1676Tribonema minus UTEX_B_3156 CDSContig_4 1305722..1306069 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149760Trimin1|149760|gw1.4.327.1Tribonema minus UTEX_B_3156 polypeptideContig_4 1305722..1306069 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1676 ID=mRNA_1676|Name=jgi.p|Trimin1|149760|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=348bp|location=Sequence derived from alignment at Contig_4:1305722..1306069- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TCCGACACCGCGCCGGCGTGGCGCGGCGTCGCCCGCGGCATCAACGTCGA
GTGCCTGTGCGGCAACGCTCAGTGCGCGGCGTACGGCGAGGTGGTCATTC
ACAGCGTCGGCATGGGCGCGTTCGCGCTCGGCGACGCGTGCGCGTGCCCC
CTTTGCCACGTTCCCTCCGCGCCCGTCGCGTGCGCCGTCTACAACTGCGT
GTGGATGTTCGAGGGCGTCAAGGCGGGTGGCGGGGCAGTGCTCAGCGGCG
CGTGGCGCGAAACGGGCGACGCCTACGAGCGCTTCAACACGCGCGCGGAG
GGCGAAAGCGGCGGCGGCGGCATGGCGGACTGGGAGCGGCTCGTGCTC
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protein sequence of jgi.p|Trimin1|149760

>Trimin1|149760|gw1.4.327.1 ID=Trimin1|149760|gw1.4.327.1|Name=jgi.p|Trimin1|149760|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=116bp
SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALGDACACP
LCHVPSAPVACAVYNCVWMFEGVKAGGGAVLSGAWRETGDAYERFNTRAE
GESGGGGMADWERLVL
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mRNA from alignment at Contig_4:1305722..1306069-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1676 ID=mRNA_1676|Name=jgi.p|Trimin1|149760|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=348bp|location=Sequence derived from alignment at Contig_4:1305722..1306069- (Tribonema minus UTEX_B_3156 )
TCCGACACCGCGCCGGCGTGGCGCGGCGTCGCCCGCGGCATCAACGTCGA GTGCCTGTGCGGCAACGCTCAGTGCGCGGCGTACGGCGAGGTGGTCATTC ACAGCGTCGGCATGGGCGCGTTCGCGCTCGGCGACGCGTGCGCGTGCCCC CTTTGCCACGTTCCCTCCGCGCCCGTCGCGTGCGCCGTCTACAACTGCGT GTGGATGTTCGAGGGCGTCAAGGCGGGTGGCGGGGCAGTGCTCAGCGGCG CGTGGCGCGAAACGGGCGACGCCTACGAGCGCTTCAACACGCGCGCGGAG GGCGAAAGCGGCGGCGGCGGCATGGCGGACTGGGAGCGGCTCGTGCTC
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Coding sequence (CDS) from alignment at Contig_4:1305722..1306069-

>mRNA_1676 ID=mRNA_1676|Name=jgi.p|Trimin1|149760|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=348bp|location=Sequence derived from alignment at Contig_4:1305722..1306069- (Tribonema minus UTEX_B_3156 )
TCCGACACCGCGCCGGCGTGGCGCGGCGTCGCCCGCGGCATCAACGTCGA
GTGCCTGTGCGGCAACGCTCAGTGCGCGGCGTACGGCGAGGTGGTCATTC
ACAGCGTCGGCATGGGCGCGTTCGCGCTCGGCGACGCGTGCGCGTGCCCC
CTTTGCCACGTTCCCTCCGCGCCCGTCGCGTGCGCCGTCTACAACTGCGT
GTGGATGTTCGAGGGCGTCAAGGCGGGTGGCGGGGCAGTGCTCAGCGGCG
CGTGGCGCGAAACGGGCGACGCCTACGAGCGCTTCAACACGCGCGCGGAG
GGCGAAAGCGGCGGCGGCGGCATGGCGGACTGGGAGCGGCTCGTGCTC
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