mRNA_1676 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|149760 vs. uniprot
Match: A0A835YV99_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV99_9STRA) HSP 1 Score: 245 bits (626), Expect = 1.530e-82 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 Query: 1 SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALGDACACPLCHVPSAPVACAVYNCVWMFEGVKAGGGAVLSGAWRETGDAYERFNTRAEGESGGGGMADWERLVL 348 SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALGDACACPLCHVPSAPVACAVYNCVWMFEGVKAGGGAVLSGAWRETGDAYERFNTRAEGESGGGGMADWERLVL Sbjct: 1 SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALGDACACPLCHVPSAPVACAVYNCVWMFEGVKAGGGAVLSGAWRETGDAYERFNTRAEGESGGGGMADWERLVL 116
BLAST of jgi.p|Trimin1|149760 vs. uniprot
Match: A0A835ZBV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBV8_9STRA) HSP 1 Score: 163 bits (413), Expect = 5.890e-48 Identity = 78/115 (67.83%), Postives = 84/115 (73.04%), Query Frame = 1 Query: 4 DTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALGDACACPLCHVPSAPVACAVYNCVWMFEGVKAGGGAVLSGAWRETGDAYERFNTRAEGESGGGGMADWERLVL 348 D AP WR G+N E +C C A GE+VIH VGMGAF LGDACACPLC P PV CA ++CVWMFEGVKAGGGA L WRE GDAYERFNT AEGESGG M +WERLVL Sbjct: 77 DDAPKWRVACPGLNAEGVCSTTWCRARGEMVIHEVGMGAFTLGDACACPLCRRPFTPVTCAFHDCVWMFEGVKAGGGAALGSVWREAGDAYERFNTGAEGESGGS-MVEWERLVL 190
BLAST of jgi.p|Trimin1|149760 vs. uniprot
Match: A0A835YSA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSA3_9STRA) HSP 1 Score: 162 bits (409), Expect = 3.090e-47 Identity = 75/116 (64.66%), Postives = 88/116 (75.86%), Query Frame = 1 Query: 1 SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALGDACACPLCHVPSAPVACAVYNCVWMFEGVKAGGGAVLSGAWRETGDAYERFNTRAEGESGGGGMADWERLVL 348 S+TAP WR G+N+E LC NA+CAA+G++VIH +GMGAFALG ACACPLC P P+ CA + CVWMFEGVKA GGA LS AWRE GD+YERFNT EG S G M +WER +L Sbjct: 88 SETAPEWRIACEGLNIEGLCSNAECAAHGQMVIHKIGMGAFALGGACACPLCVAPIVPLTCAFHRCVWMFEGVKADGGASLSTAWREAGDSYERFNTGTEGTSSGA-MVEWERFML 202
BLAST of jgi.p|Trimin1|149760 vs. uniprot
Match: A0A836CBY2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBY2_9STRA) HSP 1 Score: 159 bits (403), Expect = 3.120e-46 Identity = 75/116 (64.66%), Postives = 85/116 (73.28%), Query Frame = 1 Query: 1 SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALGDACACPLCHVPSAPVACAVYNCVWMFEGVKAGGGAVLSGAWRETGDAYERFNTRAEGESGGGGMADWERLVL 348 SDT P WR G+N+E LC NA+CAA+G++VIH +GMGAF LG ACACPLC P P+ CA + CVWMFEGVKA A LS AWRE GD YERFNT EG SG G M +WERLVL Sbjct: 89 SDTGPKWRIACEGLNIEGLCTNAECAAHGKMVIHKIGMGAFTLGGACACPLCDAPIVPLTCAFHRCVWMFEGVKADSCAALSTAWREAGDTYERFNTGTEG-SGSGAMVEWERLVL 203
BLAST of jgi.p|Trimin1|149760 vs. uniprot
Match: A0A835Z319_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z319_9STRA) HSP 1 Score: 164 bits (414), Expect = 3.340e-46 Identity = 79/116 (68.10%), Postives = 86/116 (74.14%), Query Frame = 1 Query: 1 SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALGDACACPLCHVPSAPVACAVYNCVWMFEGVKAGGGAVLSGAWRETGDAYERFNTRAEGESGGGGMADWERLVL 348 S APAWR G+NVE +CG C A G++VI VGMGAF LGDACACPLC P APV CA + C WMFEGVKAGGGA L G WRE GDAYERFNT A+GESGG M +WERLVL Sbjct: 267 SHNAPAWRVACPGLNVEGVCGTTGCRARGKMVIRGVGMGAFTLGDACACPLCRRPFAPVTCAFHACAWMFEGVKAGGGAALGGVWREAGDAYERFNTGADGESGGS-MVEWERLVL 381
BLAST of jgi.p|Trimin1|149760 vs. uniprot
Match: A0A835YTW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW7_9STRA) HSP 1 Score: 163 bits (413), Expect = 4.690e-46 Identity = 79/116 (68.10%), Postives = 84/116 (72.41%), Query Frame = 1 Query: 1 SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALGDACACPLCHVPSAPVACAVYNCVWMFEGVKAGGGAVLSGAWRETGDAYERFNTRAEGESGGGGMADWERLVL 348 S APAWR G+NVE +CG C A GE+VIH VGMGAF LGDACACPLC P APV CA C WMFEGVKAGGG L G WR GDAYERFNT A+GESGG M +WERLVL Sbjct: 242 SHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGDAYERFNTGADGESGGS-MVEWERLVL 356
BLAST of jgi.p|Trimin1|149760 vs. uniprot
Match: A0A485LRM1_9STRA (Aste57867_24223 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRM1_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 5.280e-16 Identity = 46/114 (40.35%), Postives = 57/114 (50.00%), Query Frame = 1 Query: 13 PAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFAL-GDACACPLCHVPSAPVACAVYNCVWMFEGVKAGGGAVLSGAWRE-TGDAYERFNTRAEGESGGGGMADWERLVL 348 P W V RG+NVE +C N C AYG+ V+ AF L CP CH P C Y C+W FEGV+ G G LS WRE +GD Y F E+ +A W L++ Sbjct: 210 PTWLHVCRGLNVEGICENDACEAYGDEVVACHEFNAFNLTAHRACCPSCHTKFVPRTCGFYKCLWRFEGVRHGSGVHLSSEWREASGDLYHLF------EASESNLALWLTLLV 317
BLAST of jgi.p|Trimin1|149760 vs. uniprot
Match: A0A433Q349_9FUNG (RING-type domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433Q349_9FUNG) HSP 1 Score: 73.6 bits (179), Expect = 2.520e-13 Identity = 45/124 (36.29%), Postives = 57/124 (45.97%), Query Frame = 1 Query: 1 SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFAL---GDACACPLCHVPSAPVACAVYNCVWMFEGVKAG-----GGAVLSGAWRETGDAYERFNTRAEGESGGGGMADWERLVL 348 S TAP WR V +G+N+E C N C A+ VI F C CP+C P+ C N W F G+K+G G +S WR GDAY F + G GG+A W RL + Sbjct: 61 SKTAPDWRIVTKGLNLEGTCTNDSCPAHNHRVIMKWEQRNFDFQYDSVKCRCPICFESVMPITCGFSNTWWSFRGIKSGTDTSGAGERVSCDWRRAGDAYHVF------DEGKGGVASWSRLKI 178
BLAST of jgi.p|Trimin1|149760 vs. uniprot
Match: A0A2K1JZS5_PHYPA (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JZS5_PHYPA) HSP 1 Score: 54.7 bits (130), Expect = 2.820e-6 Identity = 30/76 (39.47%), Postives = 41/76 (53.95%), Query Frame = 1 Query: 1 SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALG-DACACPLCHVPSAPVACAVYNCVWMFEGVKA 225 S TAP WR V +G+N+E C N C G++VI G A L + CP+C C+ +C+WM+EG KA Sbjct: 203 SKTAPVWRIVEKGLNLEGKCTNNACPGNGQLVICRKGFVAVNLSKEQGTCPICKQGVQVKTCSFTSCMWMYEGRKA 278
BLAST of jgi.p|Trimin1|149760 vs. uniprot
Match: A9SDA9_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SDA9_PHYPA) HSP 1 Score: 54.7 bits (130), Expect = 2.920e-6 Identity = 30/76 (39.47%), Postives = 41/76 (53.95%), Query Frame = 1 Query: 1 SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALG-DACACPLCHVPSAPVACAVYNCVWMFEGVKA 225 S TAP WR V +G+N+E C N C G++VI G A L + CP+C C+ +C+WM+EG KA Sbjct: 318 SKTAPVWRIVEKGLNLEGKCTNNACPGNGQLVICRKGFVAVNLSKEQGTCPICKQGVQVKTCSFTSCMWMYEGRKA 393 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149760 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1676 ID=mRNA_1676|Name=jgi.p|Trimin1|149760|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=348bp|location=Sequence derived from alignment at Contig_4:1305722..1306069- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TCCGACACCGCGCCGGCGTGGCGCGGCGTCGCCCGCGGCATCAACGTCGAback to top protein sequence of jgi.p|Trimin1|149760 >Trimin1|149760|gw1.4.327.1 ID=Trimin1|149760|gw1.4.327.1|Name=jgi.p|Trimin1|149760|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=116bp SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALGDACACPback to top mRNA from alignment at Contig_4:1305722..1306069- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1676 ID=mRNA_1676|Name=jgi.p|Trimin1|149760|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=348bp|location=Sequence derived from alignment at Contig_4:1305722..1306069- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_4:1305722..1306069- >mRNA_1676 ID=mRNA_1676|Name=jgi.p|Trimin1|149760|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=348bp|location=Sequence derived from alignment at Contig_4:1305722..1306069- (Tribonema minus UTEX_B_3156 )back to top |