mRNA_1673 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|346701 vs. uniprot
Match: A0A836CCH9_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCH9_9STRA) HSP 1 Score: 546 bits (1408), Expect = 1.060e-194 Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 1 Query: 1 MNDRLAELGSQVGTFQTNKSMMTVDNGQHSMNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQSRTGIDDVLTEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQCRIWLAIAAILAAITLIIVIYIEAKPSK 900 MNDRLAELGSQVGTFQTNKSMMTVDNGQHSMNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQSRTGIDDVLTEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQCRIWLAIAAILAAITLIIVIYIEAKPSK Sbjct: 1 MNDRLAELGSQVGTFQTNKSMMTVDNGQHSMNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQSRTGIDDVLTEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQCRIWLAIAAILAAITLIIVIYIEAKPSK 300
BLAST of jgi.p|Trimin1|346701 vs. uniprot
Match: A0A836CD59_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD59_9STRA) HSP 1 Score: 272 bits (696), Expect = 1.670e-86 Identity = 157/282 (55.67%), Postives = 207/282 (73.40%), Query Frame = 1 Query: 1 MNDRLAEL--GSQV-GTFQTNKSMMTVDN---GQHSMNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQSR---TGIDDVLTEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQC 819 MNDRL +L GS G + + + V+ G+ M +F+E+I++I DI +++AACK+LD L AA+FAP+++ G +AK+ ++ +L KTN+ SH+KTLL+ +R ET LKRD K T+AN+RVR NLE + KFVD AKEY+NKQ+RY+ QVK KAER ++AVKP VTE+EM AVF +DGV RVL+AAV+Q + +VL EVQD Y+DVRRLEASI+ELHRMFMDLALLVEQQGETLD IE QV +AG+Y+R G+ +L A+ AK VR RQC Sbjct: 1 MNDRLGDLRRGSNADGEVELSSVAIDVEEEAGGKDDMKKFFESIESIKADINAVKAACKQLDSLTEAAIFAPMDKGGETAKDKITEVLAKTNKHVSHAKTLLHDLRTETAALKRDPKRSTNANIRVRANLETTFTRKFVDVAKEYQNKQNRYKSQVKGKAERAVKAVKPTVTEDEMAAVFQQDDGVKRVLEAAVMQQSGDPVEVANVLAEVQDQYEDVRRLEASILELHRMFMDLALLVEQQGETLDVIEFQVKQAGDYVRQGNVSLEDAIAKAKQVRKRQC 282
BLAST of jgi.p|Trimin1|346701 vs. uniprot
Match: A0A6H5KD48_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD48_9PHAE) HSP 1 Score: 209 bits (532), Expect = 8.580e-62 Identity = 116/245 (47.35%), Postives = 164/245 (66.94%), Query Frame = 1 Query: 91 MNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQSRTGID--DVLTEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQC 819 M F++ + A+ DI +++ AC +LD L A A AK ++ + TN +H+K LL A+R ET +K+D + +RVR NL+ + KFVD AK+Y+N+Q++Y+ VK+KAER I AVKP TEEE+T VF EDGV RV++AA+LQ ++ VL EV+DTY DVRRLEASI+ELH+MFMDLALLV++QGE LD IE QV A +Y++ + ++A A+D++K +R RQC Sbjct: 45 MEGFFDKVNAVKKDIDAVKKACTDLDTLTQQATLTSSATVEADAKSQINTTIANTNNRVAHAKGLLQAMREETEAMKKDPSRAKPSEVRVRENLQNTLTRKFVDLAKDYQNRQNKYKTSVKKKAERQILAVKPSATEEELTTVFEQEDGVQRVMEAAILQQGDPVEVTHVLEEVKDTYHDVRRLEASILELHKMFMDLALLVDRQGEMLDQIEYQVKSASDYVKDANTDIAHAIDSSKKIRKRQC 289
BLAST of jgi.p|Trimin1|346701 vs. uniprot
Match: A0A7S2FD15_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FD15_9STRA) HSP 1 Score: 151 bits (382), Expect = 9.610e-40 Identity = 96/257 (37.35%), Postives = 145/257 (56.42%), Query Frame = 1 Query: 91 MNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQSRTG-IDDVLTEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQCRIWLAIAAILAAI 858 M +F+ ++A+ + I++ACKE+ + L A + S K +S ++ KTN+I KT+LN ++ ET L R+ R+R NL + KF++ KEY+ +Q Y+ VK+K R ++ VK T EE+ V G + ++A+L+S + + ++ D Y+DV RLE S+ ELH+MF+D ALL EQQGE LD IE QV A EYI G+ +L VA D K++R +QC + L I I AI Sbjct: 32 MQKFFADVEAVKGHLKKIKSACKEIQNINQQMLLATTSETEISQK--LSPIIDKTNKIAQRCKTILNTMKEETDTLARENDKAKANEQRIRENLVNTLTRKFMEVVKEYQKRQQDYKDDVKKKVTRQVKIVKEDATPEEIDQVMKSAGGTGAMFKSAILKSANNEVVEAYSQAADQYQDVLRLEESMQELHQMFVDFALLTEQQGELLDQIEYQVHAASEYITDGNDDLEVAGDYQKSIRKKQCCVILIILVIAIAI 286
BLAST of jgi.p|Trimin1|346701 vs. uniprot
Match: A0A4D9D821_9STRA (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D821_9STRA) HSP 1 Score: 151 bits (381), Expect = 2.490e-39 Identity = 107/314 (34.08%), Postives = 173/314 (55.10%), Query Frame = 1 Query: 1 MNDRLAELGSQ--------VGTFQTN------------KSMMTVDNGQHSMNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQ-SRTGIDDVLTEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQCRIWLAIAAILAAITLIIVIY 879 MNDRLAEL ++ VG T + +T + MN+F+ ++A +DI +I+ A + + + A A A + ++A++ +TN + +K +L+ ++ ETT+L++D + T + LR+R NL + KFVD K+Y+N Q++Y+ +K K +R ++ VKP + EE+ AVF G +V+ A+L+ + I +V V D Y+DV LEASI ELH+MF+D ALLVEQQGE LD IE QV A Y+ G + A+ AK R QC + + I ++ + L++ ++ Sbjct: 1 MNDRLAELRAKGGGAPSDSVGVDMTRLQGRGDGAGAAPSAAVTNASQPQYMNDFFTDVEATKEDINAIKEAIRRMSGIHQEAFLATTGPREAKLSQELNAVIQETNPKAARAKKMLSKMKDETTKLRQDSR-CTPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKDKVQRQVQIVKPDASTEEIEAVFKSGGGGDQVITQAILKGANESIRNVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGEMLDQIEYQVKGAANYVEEGTLQVQGAIANAKKARKYQCCMLVCIMVLVGILILVLFVF 313
BLAST of jgi.p|Trimin1|346701 vs. uniprot
Match: A0A067CCD7_SAPPC (t-SNARE coiled-coil homology domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CCD7_SAPPC) HSP 1 Score: 149 bits (377), Expect = 5.340e-39 Identity = 100/277 (36.10%), Postives = 157/277 (56.68%), Query Frame = 1 Query: 1 MNDRLAEL---GSQVGTFQTNKSMMTVDNGQHSMNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQ-SRTGIDDVLTEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQC 819 MNDRLAEL S V + S T M +F+ ++ + D++ I A + +L AL A + + + + ++ TN+I +H+K +L I+ E+ E K+D K + + +R+R N+ + KF+D KEY+ Q +++ +K K +R ++ VKP +E+E+ V D A + ++A+LQ S I +V D Y+DV +LE S+ ELH+MF+DLALLVEQQGE LD IE QV A YI G+K + A+ T K++R +QC Sbjct: 1 MNDRLAELTGKSSDVMIDISEASSTTEITRPKFMEKFFLDVEDMQADLSKIGHATDRIGELNHQALLATAAGEEQTISQELCLVIDSTNKIAAHAKGMLELIKKESAEKKKD-KTVAASEIRIRDNMSTTLTRKFMDTMKEYQKAQQKFKADMKNKVKRQVQIVKPDASEQEIDMVMRSADPGA-IYRSAILQGSAESIKEVYMNCHDKYQDVLKLEQSVAELHQMFLDLALLVEQQGEMLDQIEFQVKAASNYIDAGNKEVTKAIQTQKSMRKKQC 275
BLAST of jgi.p|Trimin1|346701 vs. uniprot
Match: A0A7S2K4X5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K4X5_9STRA) HSP 1 Score: 148 bits (374), Expect = 1.790e-38 Identity = 103/304 (33.88%), Postives = 166/304 (54.61%), Query Frame = 1 Query: 1 MNDRLAELGSQVGTFQTNKSMMTVDN-----------GQHSMNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQSRTGIDDVL----TEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQCRIWLAIAAILAAITLI 867 MNDRLA+L G T+ +TVD G + M +F++ ++ I DI ++R A K + ++ A+ A + L+ TN+ H+K LL I+ + E ++ + I ++++R+R NL + KFVD KEY+N Q +Y+ +K+K +R ++ VKP T EE+ AV E G + + +L TG+ D + V Y+DV LEAS+ ELH+MF D ALL EQQGE L+ IE QV A +YI G+ ++ +++ K++R +QC W+ + I+A I ++ Sbjct: 1 MNDRLADLT--YGGANTSMDDVTVDQMEAGTTTDNGAGANYMEQFFKDVETIKADIQAVRDATKVIGQINEEAVLAISTDKERDLSNRLRPLVDSTNKKAKHAKALLELIKKQN-EQEKGKGNIKNSDMRIRENLNNTLTRKFVDEMKEYQNAQQKYKSDIKKKVKRQVQIVKPDATNEEIDAVMKSEGGRDALYKDKIL---TGVADPIKNAYANVAGKYQDVLALEASVTELHQMFQDFALLTEQQGELLNQIEFQVETAADYIEEGNVDIVKSIEYQKSIRKKQC--WIIVIVIVALIVVL 296
BLAST of jgi.p|Trimin1|346701 vs. uniprot
Match: B8BWQ6_THAPS (Syntaxin, epimorphin family n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWQ6_THAPS) HSP 1 Score: 143 bits (361), Expect = 5.530e-37 Identity = 87/247 (35.22%), Postives = 142/247 (57.49%), Query Frame = 1 Query: 91 MNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQSRTGIDDVLT----EVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQC 819 M +F+ ++AI DI+++ +A +++ L A+ A E + + + + L+ TN+ K LL ++ E LK ++K IT +LRVR NL + L KF+D K Y+N Q +Y+ VK+K R ++ +KP T++E+ + E G + Q +L G++D + +V Y+DV LEAS+ ELH+MF+D ALL EQQGE LD IE QV A +Y+ + ++ A++ K +R +QC Sbjct: 1 MKQFFNDVEAIKLDISTVTSATEQITSLKDKAVLATSETEESQISDTIRTLVESTNKRAKTCKNLLGLLKQENANLK-EKKEITATDLRVRENLVNTLLRKFIDEMKRYQNSQQQYKTDVKKKVTRQVQMIKPDATDQEVDDIMRSEGGREALYQQQILSG--GVNDQIKTQYRQVAGKYQDVLTLEASVAELHQMFLDFALLTEQQGELLDQIEYQVRSAADYVEDANVDVYEAIEYQKKIRKKQC 244
BLAST of jgi.p|Trimin1|346701 vs. uniprot
Match: A0A2D4CGW6_PYTIN (Syntaxin, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CGW6_PYTIN) HSP 1 Score: 144 bits (363), Expect = 6.130e-37 Identity = 101/306 (33.01%), Postives = 172/306 (56.21%), Query Frame = 1 Query: 1 MNDRLAELGSQVGTFQTNKSMMTVDNGQHS-----MNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQSRT-GIDDVLTEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQCRIWLAIAAILAAITLIIVIYIEAKPSK 900 M DRLAE+ + TN++ ++V M +F++ ++ + D+A+I +++ +L A+ A + + ++ ++ +NR +H+K +L A++ E+ + K+D K + +R+R N+ + KF+D K+Y+ Q +Y+ +K K +R ++ VKP +E E+ AV D + ++A+LQ I DV VQD Y+DV RLE S+ ELH+MF+DLALLVEQQGE LD IE QV A Y+ G++ + A+ + K+ R ++C I + IT+I+VI + A K Sbjct: 1 MLDRLAEVTGKTSA--TNEAAVSVGRPNEVVRPKFMEQFFKDVEDMQSDLANINLGTQKIAELNQRAVLATSNTEEQAISNELTIVIETSNRHATHAKGILEALKKESADRKKD-KSTPVSEIRIRDNMCATLTKKFMDCMKDYQKAQQKYKNDMKAKVKRQVQIVKPDASEAEIDAVMRSPDP-GSIYKSAILQGPADAIRDVYLNVQDKYQDVLRLEQSVAELHQMFLDLALLVEQQGEMLDQIEFQVRTAANYVEQGNQXVVKALKSQKSARKKKCCI------LFVGITIILVIVLVAAFKK 296
BLAST of jgi.p|Trimin1|346701 vs. uniprot
Match: A0A024TGB6_9STRA (t-SNARE coiled-coil homology domain-containing protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024TGB6_9STRA) HSP 1 Score: 139 bits (351), Expect = 3.530e-35 Identity = 96/276 (34.78%), Postives = 154/276 (55.80%), Query Frame = 1 Query: 1 MNDRLAEL-GSQVGTFQTNKSMMTVDNGQHS-MNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQ-SRTGIDDVLTEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQC 819 M+DRLAEL G G + + + + M +F+ ++ + D+ I A + +L AL A + + + ++ TN++ + +K LL I+ ET E K+D K + + +R+R N+ + KF+D KEY+ Q R++ +K K +R ++ VKP +E+E+ V D A + ++A+LQ S I +V D Y+DV +LE S+ ELH+MF+DLALLVEQQGE LD IE QV A YI G+K + A+ + K++R + C Sbjct: 1 MHDRLAELTGKAPGEVAIDVAAENPNVARPKFMEKFFLDVEDMQADLGKITVATDRIGELNHQALLATATGEEQIISQELCLVIDSTNKVAARAKALLELIKKETAEKKKD-KVVPASEMRIRDNMSTTLTRKFMDTMKEYQKAQQRFKSDMKNKVKRQVQIVKPDASEQEIDMVMRSADPGA-IYRSAILQGSNDSIKEVYMTCHDKYQDVLKLEQSVAELHQMFLDLALLVEQQGEMLDQIEFQVKTASNYIDAGNKEVTKALKSQKSMRKKMC 274 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|346701 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1673 ID=mRNA_1673|Name=jgi.p|Trimin1|346701|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1072bp|location=Sequence derived from alignment at Contig_4:1283781..1286359+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAACGACCGGCTGGCGGAGCTCGGCAGCCAAGTGGGCACTTTCCAGACback to top protein sequence of jgi.p|Trimin1|346701 >Trimin1|346701|estExt_Genemark1.C_Ctg_40139 ID=Trimin1|346701|estExt_Genemark1.C_Ctg_40139|Name=jgi.p|Trimin1|346701|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=301bp MNDRLAELGSQVGTFQTNKSMMTVDNGQHSMNEFYETIKAIDDDIASIRAback to top mRNA from alignment at Contig_4:1283781..1286359+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1673 ID=mRNA_1673|Name=jgi.p|Trimin1|346701|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2579bp|location=Sequence derived from alignment at Contig_4:1283781..1286359+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_4:1283781..1286359+ >mRNA_1673 ID=mRNA_1673|Name=jgi.p|Trimin1|346701|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=903bp|location=Sequence derived from alignment at Contig_4:1283781..1286359+ (Tribonema minus UTEX_B_3156 )back to top |