mRNA_1673 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|346701
Unique NamemRNA_1673
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|346701 vs. uniprot
Match: A0A836CCH9_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCH9_9STRA)

HSP 1 Score: 546 bits (1408), Expect = 1.060e-194
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 1
Query:    1 MNDRLAELGSQVGTFQTNKSMMTVDNGQHSMNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQSRTGIDDVLTEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQCRIWLAIAAILAAITLIIVIYIEAKPSK 900
            MNDRLAELGSQVGTFQTNKSMMTVDNGQHSMNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQSRTGIDDVLTEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQCRIWLAIAAILAAITLIIVIYIEAKPSK
Sbjct:    1 MNDRLAELGSQVGTFQTNKSMMTVDNGQHSMNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQSRTGIDDVLTEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQCRIWLAIAAILAAITLIIVIYIEAKPSK 300          
BLAST of jgi.p|Trimin1|346701 vs. uniprot
Match: A0A836CD59_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD59_9STRA)

HSP 1 Score: 272 bits (696), Expect = 1.670e-86
Identity = 157/282 (55.67%), Postives = 207/282 (73.40%), Query Frame = 1
Query:    1 MNDRLAEL--GSQV-GTFQTNKSMMTVDN---GQHSMNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQSR---TGIDDVLTEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQC 819
            MNDRL +L  GS   G  + +   + V+    G+  M +F+E+I++I  DI +++AACK+LD L  AA+FAP+++ G +AK+ ++ +L KTN+  SH+KTLL+ +R ET  LKRD K  T+AN+RVR NLE +   KFVD AKEY+NKQ+RY+ QVK KAER ++AVKP VTE+EM AVF  +DGV RVL+AAV+Q       + +VL EVQD Y+DVRRLEASI+ELHRMFMDLALLVEQQGETLD IE QV +AG+Y+R G+ +L  A+  AK VR RQC
Sbjct:    1 MNDRLGDLRRGSNADGEVELSSVAIDVEEEAGGKDDMKKFFESIESIKADINAVKAACKQLDSLTEAAIFAPMDKGGETAKDKITEVLAKTNKHVSHAKTLLHDLRTETAALKRDPKRSTNANIRVRANLETTFTRKFVDVAKEYQNKQNRYKSQVKGKAERAVKAVKPTVTEDEMAAVFQQDDGVKRVLEAAVMQQSGDPVEVANVLAEVQDQYEDVRRLEASILELHRMFMDLALLVEQQGETLDVIEFQVKQAGDYVRQGNVSLEDAIAKAKQVRKRQC 282          
BLAST of jgi.p|Trimin1|346701 vs. uniprot
Match: A0A6H5KD48_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD48_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 8.580e-62
Identity = 116/245 (47.35%), Postives = 164/245 (66.94%), Query Frame = 1
Query:   91 MNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQSRTGID--DVLTEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQC 819
            M  F++ + A+  DI +++ AC +LD L   A         A AK  ++  +  TN   +H+K LL A+R ET  +K+D      + +RVR NL+ +   KFVD AK+Y+N+Q++Y+  VK+KAER I AVKP  TEEE+T VF  EDGV RV++AA+LQ    ++   VL EV+DTY DVRRLEASI+ELH+MFMDLALLV++QGE LD IE QV  A +Y++  + ++A A+D++K +R RQC
Sbjct:   45 MEGFFDKVNAVKKDIDAVKKACTDLDTLTQQATLTSSATVEADAKSQINTTIANTNNRVAHAKGLLQAMREETEAMKKDPSRAKPSEVRVRENLQNTLTRKFVDLAKDYQNRQNKYKTSVKKKAERQILAVKPSATEEELTTVFEQEDGVQRVMEAAILQQGDPVEVTHVLEEVKDTYHDVRRLEASILELHKMFMDLALLVDRQGEMLDQIEYQVKSASDYVKDANTDIAHAIDSSKKIRKRQC 289          
BLAST of jgi.p|Trimin1|346701 vs. uniprot
Match: A0A7S2FD15_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FD15_9STRA)

HSP 1 Score: 151 bits (382), Expect = 9.610e-40
Identity = 96/257 (37.35%), Postives = 145/257 (56.42%), Query Frame = 1
Query:   91 MNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQSRTG-IDDVLTEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQCRIWLAIAAILAAI 858
            M +F+  ++A+   +  I++ACKE+  +    L A   +   S K  +S ++ KTN+I    KT+LN ++ ET  L R+         R+R NL  +   KF++  KEY+ +Q  Y+  VK+K  R ++ VK   T EE+  V     G   + ++A+L+S    + +  ++  D Y+DV RLE S+ ELH+MF+D ALL EQQGE LD IE QV  A EYI  G+ +L VA D  K++R +QC + L I  I  AI
Sbjct:   32 MQKFFADVEAVKGHLKKIKSACKEIQNINQQMLLATTSETEISQK--LSPIIDKTNKIAQRCKTILNTMKEETDTLARENDKAKANEQRIRENLVNTLTRKFMEVVKEYQKRQQDYKDDVKKKVTRQVKIVKEDATPEEIDQVMKSAGGTGAMFKSAILKSANNEVVEAYSQAADQYQDVLRLEESMQELHQMFVDFALLTEQQGELLDQIEYQVHAASEYITDGNDDLEVAGDYQKSIRKKQCCVILIILVIAIAI 286          
BLAST of jgi.p|Trimin1|346701 vs. uniprot
Match: A0A4D9D821_9STRA (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D821_9STRA)

HSP 1 Score: 151 bits (381), Expect = 2.490e-39
Identity = 107/314 (34.08%), Postives = 173/314 (55.10%), Query Frame = 1
Query:    1 MNDRLAELGSQ--------VGTFQTN------------KSMMTVDNGQHSMNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQ-SRTGIDDVLTEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQCRIWLAIAAILAAITLIIVIY 879
            MNDRLAEL ++        VG   T              + +T  +    MN+F+  ++A  +DI +I+ A + +  +   A  A      A   + ++A++ +TN   + +K +L+ ++ ETT+L++D +  T + LR+R NL  +   KFVD  K+Y+N Q++Y+  +K K +R ++ VKP  + EE+ AVF    G  +V+  A+L+ +   I +V   V D Y+DV  LEASI ELH+MF+D ALLVEQQGE LD IE QV  A  Y+  G   +  A+  AK  R  QC + + I  ++  + L++ ++
Sbjct:    1 MNDRLAELRAKGGGAPSDSVGVDMTRLQGRGDGAGAAPSAAVTNASQPQYMNDFFTDVEATKEDINAIKEAIRRMSGIHQEAFLATTGPREAKLSQELNAVIQETNPKAARAKKMLSKMKDETTKLRQDSR-CTPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKDKVQRQVQIVKPDASTEEIEAVFKSGGGGDQVITQAILKGANESIRNVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGEMLDQIEYQVKGAANYVEEGTLQVQGAIANAKKARKYQCCMLVCIMVLVGILILVLFVF 313          
BLAST of jgi.p|Trimin1|346701 vs. uniprot
Match: A0A067CCD7_SAPPC (t-SNARE coiled-coil homology domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CCD7_SAPPC)

HSP 1 Score: 149 bits (377), Expect = 5.340e-39
Identity = 100/277 (36.10%), Postives = 157/277 (56.68%), Query Frame = 1
Query:    1 MNDRLAEL---GSQVGTFQTNKSMMTVDNGQHSMNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQ-SRTGIDDVLTEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQC 819
            MNDRLAEL    S V    +  S  T       M +F+  ++ +  D++ I  A   + +L   AL A    +  +  + +  ++  TN+I +H+K +L  I+ E+ E K+D K +  + +R+R N+  +   KF+D  KEY+  Q +++  +K K +R ++ VKP  +E+E+  V    D  A + ++A+LQ S   I +V     D Y+DV +LE S+ ELH+MF+DLALLVEQQGE LD IE QV  A  YI  G+K +  A+ T K++R +QC
Sbjct:    1 MNDRLAELTGKSSDVMIDISEASSTTEITRPKFMEKFFLDVEDMQADLSKIGHATDRIGELNHQALLATAAGEEQTISQELCLVIDSTNKIAAHAKGMLELIKKESAEKKKD-KTVAASEIRIRDNMSTTLTRKFMDTMKEYQKAQQKFKADMKNKVKRQVQIVKPDASEQEIDMVMRSADPGA-IYRSAILQGSAESIKEVYMNCHDKYQDVLKLEQSVAELHQMFLDLALLVEQQGEMLDQIEFQVKAASNYIDAGNKEVTKAIQTQKSMRKKQC 275          
BLAST of jgi.p|Trimin1|346701 vs. uniprot
Match: A0A7S2K4X5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K4X5_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.790e-38
Identity = 103/304 (33.88%), Postives = 166/304 (54.61%), Query Frame = 1
Query:    1 MNDRLAELGSQVGTFQTNKSMMTVDN-----------GQHSMNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQSRTGIDDVL----TEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQCRIWLAIAAILAAITLI 867
            MNDRLA+L    G   T+   +TVD            G + M +F++ ++ I  DI ++R A K + ++   A+ A            +  L+  TN+   H+K LL  I+ +  E ++ +  I ++++R+R NL  +   KFVD  KEY+N Q +Y+  +K+K +R ++ VKP  T EE+ AV   E G   + +  +L   TG+ D +      V   Y+DV  LEAS+ ELH+MF D ALL EQQGE L+ IE QV  A +YI  G+ ++  +++  K++R +QC  W+ +  I+A I ++
Sbjct:    1 MNDRLADLT--YGGANTSMDDVTVDQMEAGTTTDNGAGANYMEQFFKDVETIKADIQAVRDATKVIGQINEEAVLAISTDKERDLSNRLRPLVDSTNKKAKHAKALLELIKKQN-EQEKGKGNIKNSDMRIRENLNNTLTRKFVDEMKEYQNAQQKYKSDIKKKVKRQVQIVKPDATNEEIDAVMKSEGGRDALYKDKIL---TGVADPIKNAYANVAGKYQDVLALEASVTELHQMFQDFALLTEQQGELLNQIEFQVETAADYIEEGNVDIVKSIEYQKSIRKKQC--WIIVIVIVALIVVL 296          
BLAST of jgi.p|Trimin1|346701 vs. uniprot
Match: B8BWQ6_THAPS (Syntaxin, epimorphin family n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWQ6_THAPS)

HSP 1 Score: 143 bits (361), Expect = 5.530e-37
Identity = 87/247 (35.22%), Postives = 142/247 (57.49%), Query Frame = 1
Query:   91 MNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQSRTGIDDVLT----EVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQC 819
            M +F+  ++AI  DI+++ +A +++  L   A+ A  E + +   + +  L+  TN+     K LL  ++ E   LK ++K IT  +LRVR NL  + L KF+D  K Y+N Q +Y+  VK+K  R ++ +KP  T++E+  +   E G   + Q  +L    G++D +     +V   Y+DV  LEAS+ ELH+MF+D ALL EQQGE LD IE QV  A +Y+   + ++  A++  K +R +QC
Sbjct:    1 MKQFFNDVEAIKLDISTVTSATEQITSLKDKAVLATSETEESQISDTIRTLVESTNKRAKTCKNLLGLLKQENANLK-EKKEITATDLRVRENLVNTLLRKFIDEMKRYQNSQQQYKTDVKKKVTRQVQMIKPDATDQEVDDIMRSEGGREALYQQQILSG--GVNDQIKTQYRQVAGKYQDVLTLEASVAELHQMFLDFALLTEQQGELLDQIEYQVRSAADYVEDANVDVYEAIEYQKKIRKKQC 244          
BLAST of jgi.p|Trimin1|346701 vs. uniprot
Match: A0A2D4CGW6_PYTIN (Syntaxin, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CGW6_PYTIN)

HSP 1 Score: 144 bits (363), Expect = 6.130e-37
Identity = 101/306 (33.01%), Postives = 172/306 (56.21%), Query Frame = 1
Query:    1 MNDRLAELGSQVGTFQTNKSMMTVDNGQHS-----MNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQSRT-GIDDVLTEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQCRIWLAIAAILAAITLIIVIYIEAKPSK 900
            M DRLAE+  +     TN++ ++V           M +F++ ++ +  D+A+I    +++ +L   A+ A    +  +    ++ ++  +NR  +H+K +L A++ E+ + K+D K    + +R+R N+  +   KF+D  K+Y+  Q +Y+  +K K +R ++ VKP  +E E+ AV    D    + ++A+LQ     I DV   VQD Y+DV RLE S+ ELH+MF+DLALLVEQQGE LD IE QV  A  Y+  G++ +  A+ + K+ R ++C I      +   IT+I+VI + A   K
Sbjct:    1 MLDRLAEVTGKTSA--TNEAAVSVGRPNEVVRPKFMEQFFKDVEDMQSDLANINLGTQKIAELNQRAVLATSNTEEQAISNELTIVIETSNRHATHAKGILEALKKESADRKKD-KSTPVSEIRIRDNMCATLTKKFMDCMKDYQKAQQKYKNDMKAKVKRQVQIVKPDASEAEIDAVMRSPDP-GSIYKSAILQGPADAIRDVYLNVQDKYQDVLRLEQSVAELHQMFLDLALLVEQQGEMLDQIEFQVRTAANYVEQGNQXVVKALKSQKSARKKKCCI------LFVGITIILVIVLVAAFKK 296          
BLAST of jgi.p|Trimin1|346701 vs. uniprot
Match: A0A024TGB6_9STRA (t-SNARE coiled-coil homology domain-containing protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024TGB6_9STRA)

HSP 1 Score: 139 bits (351), Expect = 3.530e-35
Identity = 96/276 (34.78%), Postives = 154/276 (55.80%), Query Frame = 1
Query:    1 MNDRLAEL-GSQVGTFQTNKSMMTVDNGQHS-MNEFYETIKAIDDDIASIRAACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQ-SRTGIDDVLTEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQC 819
            M+DRLAEL G   G    + +    +  +   M +F+  ++ +  D+  I  A   + +L   AL A    +     + +  ++  TN++ + +K LL  I+ ET E K+D K +  + +R+R N+  +   KF+D  KEY+  Q R++  +K K +R ++ VKP  +E+E+  V    D  A + ++A+LQ S   I +V     D Y+DV +LE S+ ELH+MF+DLALLVEQQGE LD IE QV  A  YI  G+K +  A+ + K++R + C
Sbjct:    1 MHDRLAELTGKAPGEVAIDVAAENPNVARPKFMEKFFLDVEDMQADLGKITVATDRIGELNHQALLATATGEEQIISQELCLVIDSTNKVAARAKALLELIKKETAEKKKD-KVVPASEMRIRDNMSTTLTRKFMDTMKEYQKAQQRFKSDMKNKVKRQVQIVKPDASEQEIDMVMRSADPGA-IYRSAILQGSNDSIKEVYMTCHDKYQDVLKLEQSVAELHQMFLDLALLVEQQGEMLDQIEFQVKTASNYIDAGNKEVTKALKSQKSMRKKMC 274          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|346701 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CCH9_9STRA1.060e-194100.00Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A836CD59_9STRA1.670e-8655.67Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A6H5KD48_9PHAE8.580e-6247.35t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S2FD15_9STRA9.610e-4037.35Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A4D9D821_9STRA2.490e-3934.08t-SNARE coiled-coil homology domain-containing pro... [more]
A0A067CCD7_SAPPC5.340e-3936.10t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S2K4X5_9STRA1.790e-3833.88Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
B8BWQ6_THAPS5.530e-3735.22Syntaxin, epimorphin family n=1 Tax=Thalassiosira ... [more]
A0A2D4CGW6_PYTIN6.130e-3733.01Syntaxin, putative n=1 Tax=Pythium insidiosum TaxI... [more]
A0A024TGB6_9STRA3.530e-3534.78t-SNARE coiled-coil homology domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_4contigContig_4:1283781..1286359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|346701|estExt_Genemark1.C_Ctg_40139
KEGG TC2.A.53.3
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03019,ko04131,ko04147
KEGG rclassRC00002
KEGG ReactionR03035
KEGG ModuleM00120
KEGG Pathwayko00770,ko01100,ko03015,ko04130,ko04721,ko04911,ko05031,map00770,map01100,map03015,map04130,map04721,map04911,map05031
KEGG koko:K02201,ko:K03321,ko:K04560,ko:K08486,ko:K14411
EC2.7.7.3
GOsGO:0000003,GO:0000149,GO:0000902,GO:0000904,GO:0001101,GO:0001505,GO:0003006,GO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005802,GO:0005886,GO:0005911,GO:0006605,GO:0006612,GO:0006810,GO:0006833,GO:0006836,GO:0006886,GO:0006887,GO:0006904,GO:0006906,GO:0006950,GO:0006952,GO:0006996,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007610,GO:0007611,GO:0007613,GO:0007614,GO:0008104,GO:0008150,GO:0009266,GO:0009409,GO:0009504,GO:0009506,GO:0009524,GO:0009605,GO:0009607,GO:0009620,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009987,GO:0010033,GO:0010119,GO:0010148,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0017156,GO:0022406,GO:0022414,GO:0023052,GO:0023061,GO:0030054,GO:0030133,GO:0030154,GO:0031201,GO:0031224,GO:0031347,GO:0031348,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032507,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0033993,GO:0034613,GO:0040007,GO:0042044,GO:0042221,GO:0042886,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043495,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044706,GO:0045055,GO:0045184,GO:0045185,GO:0046903,GO:0046907,GO:0048278,GO:0048284,GO:0048468,GO:0048489,GO:0048519,GO:0048583,GO:0048585,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0050789,GO:0050794,GO:0050832,GO:0050877,GO:0050890,GO:0050896,GO:0051179,GO:0051234,GO:0051235,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051651,GO:0051656,GO:0051704,GO:0051707,GO:0055044,GO:0060560,GO:0061024,GO:0061025,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072658,GO:0072659,GO:0072660,GO:0080134,GO:0090150,GO:0090174,GO:0097305,GO:0097479,GO:0097480,GO:0097708,GO:0098542,GO:0098791,GO:0098796,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140029,GO:0140056,GO:1901700,GO:1990778
Preferred nameSYP111
DescriptionSNAP receptor activity
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5074@1|root,KOG0810@2759|Eukaryota
Evalue2.4e-63
Seed ortholog2880.D7G5P2
Hectar predicted targeting categoryother localisation
TranscriptId347023
TrackFilteredModels1
ProteinId346701
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346701gene_1673Tribonema minus UTEX_B_3156 geneContig_4 1283781..1286359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346701Trimin1|346701|estExt_Genemark1.C_Ctg_40139Tribonema minus UTEX_B_3156 polypeptideContig_4 1283781..1286190 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1673_1exon_1673_1Tribonema minus UTEX_B_3156 exonContig_4 1283781..1283987 +
exon_1673_2exon_1673_2Tribonema minus UTEX_B_3156 exonContig_4 1284151..1284363 +
exon_1673_3exon_1673_3Tribonema minus UTEX_B_3156 exonContig_4 1284750..1284921 +
exon_1673_4exon_1673_4Tribonema minus UTEX_B_3156 exonContig_4 1285441..1285577 +
exon_1673_5exon_1673_5Tribonema minus UTEX_B_3156 exonContig_4 1286017..1286359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1673CDS_1673Tribonema minus UTEX_B_3156 CDSContig_4 1283781..1283987 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_1673UTR3_1673Tribonema minus UTEX_B_3156 three_prime_UTRContig_4 1286191..1286359 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1673 ID=mRNA_1673|Name=jgi.p|Trimin1|346701|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1072bp|location=Sequence derived from alignment at Contig_4:1283781..1286359+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGACCGGCTGGCGGAGCTCGGCAGCCAAGTGGGCACTTTCCAGAC
CAACAAGTCGATGATGACAGTGGACAATGGCCAACATAGCATGAACGAGT
TCTATGAAACCATCAAGGCGATAGACGATGATATTGCCTCAATCAGGGCG
GCCTGCAAGGAGCTGGACAAGCTTGCCAGCGCAGCGCTGTTCGCCCCCTT
GGAACAGGACGGAGCCAGCGCCAAGGAAGCCATGTCTGCCCTGCTGACCA
AGACTAACAGGATCACCTCGCACTCCAAGACGCTGCTGAATGCCATACGC
GCGGAGACGACGGAGCTGAAGCGGGACCGCAAGGGCATCACAGATGCCAA
CCTGCGGGTGCGCGTCAACCTGGAGCGCAGCACGTTGACCAAGTTCGTGG
ACGCAGCGAAGGAGTACGAGAACAAGCAGTCGCGCTACAGGCTGCAGGTG
AAGCGCAAGGCGGAGCGCGTCATCCGCGCCGTCAAGCCGCTCGTGACAGA
GGAGGAGATGACGGCGGTGTTCAACCACGAGGACGGCGTCGCGCGCGTGC
TGCAGGCCGCCGTGCTGCAGTCCCGGACCGGCATCGACGACGTGCTGACG
GAGGTGCAGGACACCTACAAAGACGTGCGCCGGCTCGAGGCGAGCATCAT
GGAGCTGCACCGCATGTTCATGGACCTGGCGCTGCTGGTGGAGCAGCAGG
GGGAGACGCTCGACAACATTGAGCTCCAGGTCATCGAAGCGGGCGAGTAC
ATACGCCACGGCGACAAGAACCTCGCGGTCGCGGTCGACACGGCCAAGAC
GGTGCGCGGGCGGCAGTGCCGCATCTGGCTCGCCATCGCCGCGATCCTCG
CCGCCATCACCCTCATCATCGTCATCTACATCGAAGCCAAGCCCTCCAAG
TAGGCGCGCGCGCGCTTGTGTGCGCCGCACGTGTGACTCTCCGCGCCGGC
AGCAGTGCCCAGCAGGCATTGCTGCACAGCCCCCCCCCGGCATGTGCGCG
GGGGGGCGCGCAGCTTTCGAGCGCTGCCGCACAGCGGCAGAAGATGCGCT
CCACGCCTGTCACGAGTGCGCG
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protein sequence of jgi.p|Trimin1|346701

>Trimin1|346701|estExt_Genemark1.C_Ctg_40139 ID=Trimin1|346701|estExt_Genemark1.C_Ctg_40139|Name=jgi.p|Trimin1|346701|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=301bp
MNDRLAELGSQVGTFQTNKSMMTVDNGQHSMNEFYETIKAIDDDIASIRA
ACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIR
AETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQV
KRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQSRTGIDDVLT
EVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEY
IRHGDKNLAVAVDTAKTVRGRQCRIWLAIAAILAAITLIIVIYIEAKPSK
*
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mRNA from alignment at Contig_4:1283781..1286359+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1673 ID=mRNA_1673|Name=jgi.p|Trimin1|346701|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2579bp|location=Sequence derived from alignment at Contig_4:1283781..1286359+ (Tribonema minus UTEX_B_3156 )
ATGAACGACCGGCTGGCGGAGCTCGGCAGCCAAGTGGGCACTTTCCAGAC CAACAAGTCGATGATGACAGTGGACAATGGCCAACATAGCATGAACGAGT TCTATGAAACCATCAAGGCGATAGACGATGATATTGCCTCAATCAGGGCG GCCTGCAAGGAGCTGGACAAGCTTGCCAGCGCAGCGCTGTTCGCCCCCTT GGAACAGGTGCGTTGCGACCAAAAATCCAGTCCTGCAGGATCAGATTAGG AGTTTGCTACAGCTTGCCTCACCTTGGCGGTGCCTCACAGGCTAGCACTG ATCATCCATACTCACAGCGCTGTCATCTTGTGACTGACGAGAGTATGACG CTGTGTCGCGGGTGCGCCAGGACGGAGCCAGCGCCAAGGAAGCCATGTCT GCCCTGCTGACCAAGACTAACAGGATCACCTCGCACTCCAAGACGCTGCT GAATGCCATACGCGCGGAGACGACGGAGCTGAAGCGGGACCGCAAGGGCA TCACAGATGCCAACCTGCGGGTGCGCGTCAACCTGGAGCGCAGCACGTTG ACCAAGTTCGTGGACGCAGCGAAGGAGTACGAGGTGAGGACAAATTACAC AAGTCGTCGTGACCACGATGTGTGAAAGTGAGTAGCTCTGCCCTACTTTC ATTGATCAGCTGTGCCGTGTCAGCAGTGCCAAGGCCAAAACAGGTCCCCC CTGATCCACGCGCGGTAGCATGCAGCCGGGGAATCTGAACGGCCGCTCAC CAAGCCGAGCAGCAACTTCAACGACAACTTGAATGATACCTCTGAAAAGT AGAGGAGATCACACTCCCTTGGCAATATGGCATGAGAAAACCACAAACAT TCTCCGCACAACCAGCAATCTGTTTCACGGAGGGCCCCTGAGTCAGGTCA CCGGCGCCGTCGCTGACCCACCGCCCCACCCCTGCCCCTCATACCCCCCC CCACCCCCCTCCCTCGCAGAACAAGCAGTCGCGCTACAGGCTGCAGGTGA AGCGCAAGGCGGAGCGCGTCATCCGCGCCGTCAAGCCGCTCGTGACAGAG GAGGAGATGACGGCGGTGTTCAACCACGAGGACGGCGTCGCGCGCGTGCT GCAGGCCGCCGTGCTGCAGTCCCGGACCGGCATCGACGACGGTGAGTCGC GAGTCGCAGTCCCAGTCAAACTTTTGAGTGCGGCTGTCGCAGTCGCGTGT CAGTGATGGCCGGTCGTGAGTGCGTCACACACGGAGTCGGGATGCGCTGT CCTCCCAATCAGCCGTTGACGATGACGAGGCGCGGGTCGCATGCGACTGC AGTCAACGATGGTGCGGCACAGAGCGCGACCCTGATCAGGCGCTGATGGC CATGAGCTGTGAGGTGTAGTTCCAGTCGGAGTGCATGAGTAGCGGTCCCA TGGGGTGTTGACGTGGTGACTCGTGGGATGCAGTCTCAGGAGTGCGACGG GCAGGTGAGTCGCGAGTTGTTCCAGTGAGTCTCGAGTCGCAGTCCCAGTC AGGCGTCTATGGGCCATGGAGAGATTATGTATCAGGCGCCTCTAACCCTT TCAAGGGATGAGTCTGCCAACACTGTTCTCTTGCATCGCGCGTGACCTGC CCGCGTTTTGAACGCAAGACTGACGGCAATGCACACCTCCCTTTCGCCCT ACGCGCGCAGTGCTGACGGAGGTGCAGGACACCTACAAAGACGTGCGCCG GCTCGAGGCGAGCATCATGGAGCTGCACCGCATGTTCATGGACCTGGCGC TGCTGGTGGAGCAGCAGGGGGAGACGCTCGACAACATTGAGCTCCAGGTG AACCTCAAGTTCAATGACGCATTCGCCATGCAGCCGCTGGCAGATGGCAC TGGCCTACGTTTCATAGCGGTAGCTGAGCGCGCGATGAGCACTGGTGGTC AGACTGTTCCACGCAAATGGAGCCACAAATGACGCTGGATCATGTCGCGC GACAGCTGGTTGTGTGTTAGCAGCACTCTCCGAGACAACCTCATTCTAGT GCCACGCTCGCGCAACGCGCATGCTTCGCTGCCCTCGTACTACCTGACGC ATGCTGATTGTAAAGAACACCACGCACGACCCTTAGCGCGCTGCCCTTGC GCTGCCGATTGAACGCCACAGTCACACCATCTCACCTGTTTGCAAGCACA GCCATTACTGCGCGATGCCGGCCGCACTGCGCTCACACACCGTTCCCCTA CGGCGCCCCCCCGTGCACCCCCCCCCCCCGCTGCAGGTCATCGAAGCGGG CGAGTACATACGCCACGGCGACAAGAACCTCGCGGTCGCGGTCGACACGG CCAAGACGGTGCGCGGGCGGCAGTGCCGCATCTGGCTCGCCATCGCCGCG ATCCTCGCCGCCATCACCCTCATCATCGTCATCTACATCGAAGCCAAGCC CTCCAAGTAGGCGCGCGCGCGCTTGTGTGCGCCGCACGTGTGACTCTCCG CGCCGGCAGCAGTGCCCAGCAGGCATTGCTGCACAGCCCCCCCCCGGCAT GTGCGCGGGGGGGCGCGCAGCTTTCGAGCGCTGCCGCACAGCGGCAGAAG ATGCGCTCCACGCCTGTCACGAGTGCGCG
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Coding sequence (CDS) from alignment at Contig_4:1283781..1286359+

>mRNA_1673 ID=mRNA_1673|Name=jgi.p|Trimin1|346701|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=903bp|location=Sequence derived from alignment at Contig_4:1283781..1286359+ (Tribonema minus UTEX_B_3156 )
ATGAACGACCGGCTGGCGGAGCTCGGCAGCCAAGTGGGCACTTTCCAGAC
CAACAAGTCGATGATGACAGTGGACAATGGCCAACATAGCATGAACGAGT
TCTATGAAACCATCAAGGCGATAGACGATGATATTGCCTCAATCAGGGCG
GCCTGCAAGGAGCTGGACAAGCTTGCCAGCGCAGCGCTGTTCGCCCCCTT
GGAACAGGACGGAGCCAGCGCCAAGGAAGCCATGTCTGCCCTGCTGACCA
AGACTAACAGGATCACCTCGCACTCCAAGACGCTGCTGAATGCCATACGC
GCGGAGACGACGGAGCTGAAGCGGGACCGCAAGGGCATCACAGATGCCAA
CCTGCGGGTGCGCGTCAACCTGGAGCGCAGCACGTTGACCAAGTTCGTGG
ACGCAGCGAAGGAGTACGAGAACAAGCAGTCGCGCTACAGGCTGCAGGTG
AAGCGCAAGGCGGAGCGCGTCATCCGCGCCGTCAAGCCGCTCGTGACAGA
GGAGGAGATGACGGCGGTGTTCAACCACGAGGACGGCGTCGCGCGCGTGC
TGCAGGCCGCCGTGCTGCAGTCCCGGACCGGCATCGACGACGTGCTGACG
GAGGTGCAGGACACCTACAAAGACGTGCGCCGGCTCGAGGCGAGCATCAT
GGAGCTGCACCGCATGTTCATGGACCTGGCGCTGCTGGTGGAGCAGCAGG
GGGAGACGCTCGACAACATTGAGCTCCAGGTCATCGAAGCGGGCGAGTAC
ATACGCCACGGCGACAAGAACCTCGCGGTCGCGGTCGACACGGCCAAGAC
GGTGCGCGGGCGGCAGTGCCGCATCTGGCTCGCCATCGCCGCGATCCTCG
CCGCCATCACCCTCATCATCGTCATCTACATCGAAGCCAAGCCCTCCAAG
TAG
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