mRNA_16681 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|144673
Unique NamemRNA_16681
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|144673 vs. uniprot
Match: A0A835Z4Z9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Z9_9STRA)

HSP 1 Score: 214 bits (546), Expect = 1.820e-70
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1
Query:    1 LPPASLPRLIGKNGSNINNLRTTTGARISVEDNSTGRVTINGPAEAVIKAKEALATFSREWSAEKDSAEVAVPDRLMRVIIGKGGAGVRAIQEQCMGVRIDCDRTAGVVRIR 336
            LPPASLPRLIGKNGSNINNLRTTTGARISVEDNSTGRVTINGPAEAVIKAKEALATFSREWSAEKDSAEVAVPDRLMRVIIGKGGAGVRAIQEQCMGVRIDCDRTAGVVRIR
Sbjct:    1 LPPASLPRLIGKNGSNINNLRTTTGARISVEDNSTGRVTINGPAEAVIKAKEALATFSREWSAEKDSAEVAVPDRLMRVIIGKGGAGVRAIQEQCMGVRIDCDRTAGVVRIR 112          
BLAST of jgi.p|Trimin1|144673 vs. uniprot
Match: A0A7S3APJ7_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3APJ7_9EUKA)

HSP 1 Score: 57.4 bits (137), Expect = 2.730e-7
Identity = 41/111 (36.94%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    1 LPPASLPRLIGKNGSNINNLRTTTGARISVEDNSTGRVTINGPAEAVIKAKEALATFSREWSAEKDSAEVAVPDRLMRVIIGKGGAGVRAIQEQCMGVRIDCDRTAGVVRI 333
            +P   +P +IGK G+ I  L+  +GA   +E  S+GRV I G + AV KA   L   + E+ A +   E+ V  R + ++IG+GGA ++A+Q +  G  ID  + A VVR+
Sbjct:  215 VPTQMIPIIIGKGGTTIKRLQQDSGATFDLE-RSSGRVRIFGRSSAVQKALAMLDGLTAEFGAIE---EIEVQPRQIALVIGRGGATIKALQAES-GATIDIRKEACVVRV 320          
BLAST of jgi.p|Trimin1|144673 vs. uniprot
Match: A0A4Y9ZB60_9AGAM (Uncharacterized protein n=2 Tax=Dentipellis TaxID=154746 RepID=A0A4Y9ZB60_9AGAM)

HSP 1 Score: 57.4 bits (137), Expect = 3.100e-7
Identity = 36/114 (31.58%), Postives = 64/114 (56.14%), Query Frame = 1
Query:    1 LPPASLPRLIGKNGSNINNLRTTTGARI----SVEDNSTGRVTINGPAEAVIKAKEALATFSREWSAEKDSAEVAVPDRLMRVIIGKGGAGVRAIQEQCMGVRIDCDRTAGVVR 330
            +P  ++PR++GK G+ IN ++  TGA+I    S ED+ + ++T  G  +A+  AK A+   + +   E+ +  + +  R  R +IG GG G++ +  +C G   D    AG+VR
Sbjct:  816 VPTQAIPRILGKGGATINEIKDETGAQIDLDKSTEDSGSAQITCRGTKKAINAAKAAIQAIADQVG-EETTVVLKIESRFHRTLIGGGGQGLKDLIARCGGPA-DSRSQAGLVR 927          
BLAST of jgi.p|Trimin1|144673 vs. uniprot
Match: K0RHL8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RHL8_THAOC)

HSP 1 Score: 57.0 bits (136), Expect = 4.230e-7
Identity = 32/113 (28.32%), Postives = 59/113 (52.21%), Query Frame = 1
Query:    1 LPPASLPRLIGKNGSNINNLRTTTGARIS-VEDNSTGRVTINGPAEAVIKAKEALATFSREWSAEKDSAEVAVPDRLMRVIIGKGGAGVRAIQEQCMGVRIDCDRTAGVVRIR 336
            +P +++   IGK GS I    +    ++  +    +G + I G  E V  A++A+  +  EW A  +   V + +R++ V+IGKGG  +R IQ++  G ++D +R    +  R
Sbjct: 1039 IPESAMSAFIGKGGSGIKKFSSDNQVKMERINKLHSGTIKITGKEENVATARDAVVAWVMEWEASNEGISVDIDERIIPVVIGKGGETIRRIQKET-GCKLDINRQQSTITAR 1150          
BLAST of jgi.p|Trimin1|144673 vs. uniprot
Match: A0A4V3XGG9_9AGAM (Uncharacterized protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4V3XGG9_9AGAM)

HSP 1 Score: 56.6 bits (135), Expect = 5.760e-7
Identity = 37/115 (32.17%), Postives = 65/115 (56.52%), Query Frame = 1
Query:    1 LPPASLPRLIGKNGSNINNLRTTTGARI-----SVEDNSTGRVTINGPAEAVIKAKEALATFSREWSAEKDSAEVAVPDRLMRVIIGKGGAGVRAIQEQCMGVRIDCDRTAGVVR 330
            +P  ++PR++GK G  IN+++  TGA+I     S E++S  ++T  G  +A+  AK A+   + +   E+ +  + V +R  R +IG GG G++ +  +C G   D    AG+VR
Sbjct:  815 VPTRAIPRILGKGGVTINDIKDETGAQIDLDKSSEENSSVAQITCRGTKKAIAAAKAAIQAIADQVG-EEITVVLTVENRFHRTLIGAGGQGLKELIARCGGPA-DTRAQAGLVR 927          
BLAST of jgi.p|Trimin1|144673 vs. uniprot
Match: A0A286UGC6_9AGAM (Uncharacterized protein n=1 Tax=Pyrrhoderma noxium TaxID=2282107 RepID=A0A286UGC6_9AGAM)

HSP 1 Score: 56.6 bits (135), Expect = 5.770e-7
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 1
Query:    1 LPPASLPRLIGKNGSNINNLRTTTGARISV----EDNSTGRVTINGPAEAVIKAKEALATFSREWSAEKDSAEVAVPDRLMRVIIGKGGAGVRAIQEQCMG 291
            +P  S+ R++G+ GSNIN ++  TGA+I V    ED     +T  G  +A+  AK ++   + +  AE  +A + +  R  R IIG GG G+R +  +C G
Sbjct:  821 VPTKSVARILGRGGSNINEIKDETGAQIDVDKSNEDPQITTITCRGTKKAIASAKASITAIAEQVGAEV-TAVLNIERRFHRAIIGAGGQGLRELVTRCGG 920          
BLAST of jgi.p|Trimin1|144673 vs. uniprot
Match: A0A316UYL2_9BASI (Uncharacterized protein n=1 Tax=Jaminaea rosea TaxID=1569628 RepID=A0A316UYL2_9BASI)

HSP 1 Score: 56.6 bits (135), Expect = 5.780e-7
Identity = 33/100 (33.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:   10 ASLPRLIGKNGSNINNLRTTTGARISVEDNSTGR------VTINGPAEAVIKAKEALATFSREWSAEKDSAEVAVPDRLMRVIIGKGGAGVRAIQEQCMG 291
            ASLPR++GK+G+ +N +R  TGA+I V+ N +G       + + G  +A+  AK A+     E   E+  A + +P +    +IG GG G+R +  +  G
Sbjct:  882 ASLPRILGKSGATVNQIRDDTGAQIDVDQNGSGEKEKTTTIRLRGTNKAIAAAKAAITAIDAEVKGEETFA-IHIPSKYHGQLIGPGGQGIRDLIARATG 980          
BLAST of jgi.p|Trimin1|144673 vs. uniprot
Match: UPI000444933B (SCP160 protein n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI000444933B)

HSP 1 Score: 56.2 bits (134), Expect = 7.870e-7
Identity = 36/114 (31.58%), Postives = 63/114 (55.26%), Query Frame = 1
Query:    1 LPPASLPRLIGKNGSNINNLRTTTGARISVEDNSTG----RVTINGPAEAVIKAKEALATFSREWSAEKDSAEVAVPDRLMRVIIGKGGAGVRAIQEQCMGVRIDCDRTAGVVR 330
            +P  ++PR++GK G+ IN ++  TGA+I ++    G    ++T  G  +A+  AK A+   + +   E+ +  ++V  R  R +IG GG G+R +  +C G   D    AG+VR
Sbjct:  816 VPDRAIPRILGKGGATINEIKDDTGAQIDLDKTQEGGPVAQITCRGTKKAIAAAKAAIQAIADQVG-EETTVVLSVESRFHRTLIGAGGQGLRDLIVRCGGPA-DPKAQAGLVR 927          
BLAST of jgi.p|Trimin1|144673 vs. uniprot
Match: W4K5D3_HETIT (Uncharacterized protein (Fragment) n=1 Tax=Heterobasidion irregulare (strain TC 32-1) TaxID=747525 RepID=W4K5D3_HETIT)

HSP 1 Score: 55.1 bits (131), Expect = 2.000e-6
Identity = 36/114 (31.58%), Postives = 64/114 (56.14%), Query Frame = 1
Query:    1 LPPASLPRLIGKNGSNINNLRTTTGARISVE----DNSTGRVTINGPAEAVIKAKEALATFSREWSAEKDSAEVAVPDRLMRVIIGKGGAGVRAIQEQCMGVRIDCDRTAGVVR 330
            +P  ++PR++GK G+ IN ++  TGA+I ++    D  + ++T +G  +AV  AK A+   + +   E+ +  V V +R  R +IG GG  ++ +  +C G   D    AG+VR
Sbjct:  813 VPARAIPRILGKGGATINEIKDETGAQIDLDKTTPDAESAQITCHGTKKAVAAAKAAIQAIADQVG-EETTVVVTVENRFHRALIGAGGQVLKDLISRCGGPS-DTRAQAGLVR 924          
BLAST of jgi.p|Trimin1|144673 vs. uniprot
Match: UPI001C7A4C97 (uncharacterized protein n=1 Tax=Marasmius oreades TaxID=181124 RepID=UPI001C7A4C97)

HSP 1 Score: 54.3 bits (129), Expect = 3.720e-6
Identity = 37/115 (32.17%), Postives = 64/115 (55.65%), Query Frame = 1
Query:    1 LPPASLPRLIGKNGSNINNLRTTTGARISVE---DNSTGRVTINGPAEAVIKAKEALATFSREWSAEKDSAEVAVP--DRLMRVIIGKGGAGVRAIQEQCMGVRIDCDRTAGVVR 330
            +P  S+PR++G+ G++IN ++  T A+I V+   D S   +T+ G  +AV  AK A+   + + S   D   + VP  ++  R +IG GG G++ +  +C G   D    AG++R
Sbjct:  807 VPTRSVPRILGRAGASINEIKDATEAQIDVDRADDASVTNITVRGTKKAVNAAKTAILAIADQVS---DEVHIVVPVENKYHRTLIGAGGQGLKDLVSRCGGPT-DSRLLAGLIR 917          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144673 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A835Z4Z9_9STRA1.820e-70100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3APJ7_9EUKA2.730e-736.94Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A4Y9ZB60_9AGAM3.100e-731.58Uncharacterized protein n=2 Tax=Dentipellis TaxID=... [more]
K0RHL8_THAOC4.230e-728.32Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A4V3XGG9_9AGAM5.760e-732.17Uncharacterized protein n=1 Tax=Bondarzewia mesent... [more]
A0A286UGC6_9AGAM5.770e-734.65Uncharacterized protein n=1 Tax=Pyrrhoderma noxium... [more]
A0A316UYL2_9BASI5.780e-733.00Uncharacterized protein n=1 Tax=Jaminaea rosea Tax... [more]
UPI000444933B7.870e-731.58SCP160 protein n=1 Tax=Stereum hirsutum (strain FP... [more]
W4K5D3_HETIT2.000e-631.58Uncharacterized protein (Fragment) n=1 Tax=Heterob... [more]
UPI001C7A4C973.720e-632.17uncharacterized protein n=1 Tax=Marasmius oreades ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_183contigContig_183:3573..3908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|144673|gw1.183.37.1
DescriptionPfam:KH_3
COG categoryA
Max annot lvl2836|Bacillariophyta
EggNOG OGsKOG1676@1|root,KOG2208@1|root,KOG1676@2759|Eukaryota,KOG2208@2759|Eukaryota,2XF6R@2836|Bacillariophyta
Evalue2e-08
Seed ortholog35128.Thaps21673
Hectar predicted targeting categoryother localisation
TranscriptId144995
TrackFilteredModels1
ProteinId144673
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144673gene_16681Tribonema minus UTEX_B_3156 geneContig_183 3573..3908 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16681_1exon_16681_1Tribonema minus UTEX_B_3156 exonContig_183 3573..3908 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16681CDS_16681Tribonema minus UTEX_B_3156 CDSContig_183 3573..3908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144673Trimin1|144673|gw1.183.37.1Tribonema minus UTEX_B_3156 polypeptideContig_183 3573..3908 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16681 ID=mRNA_16681|Name=jgi.p|Trimin1|144673|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=336bp|location=Sequence derived from alignment at Contig_183:3573..3908- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCCGCCGGCATCGCTTCCTCGCCTCATCGGCAAGAACGGCTCCAATAT
CAACAACCTGCGCACCACAACCGGTGCCAGAATCTCCGTAGAGGACAACA
GCACCGGCCGTGTGACCATTAACGGTCCTGCTGAAGCTGTCATCAAGGCT
AAGGAAGCTCTGGCAACGTTCTCTCGGGAGTGGTCTGCGGAGAAAGACTC
AGCAGAAGTGGCCGTTCCGGATCGCCTCATGCGAGTGATCATTGGAAAGG
GCGGGGCGGGGGTGCGCGCTATACAGGAGCAGTGCATGGGCGTGCGAATC
GACTGCGACAGGACGGCGGGCGTGGTGCGCATCAGG
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protein sequence of jgi.p|Trimin1|144673

>Trimin1|144673|gw1.183.37.1 ID=Trimin1|144673|gw1.183.37.1|Name=jgi.p|Trimin1|144673|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=112bp
LPPASLPRLIGKNGSNINNLRTTTGARISVEDNSTGRVTINGPAEAVIKA
KEALATFSREWSAEKDSAEVAVPDRLMRVIIGKGGAGVRAIQEQCMGVRI
DCDRTAGVVRIR
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mRNA from alignment at Contig_183:3573..3908-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16681 ID=mRNA_16681|Name=jgi.p|Trimin1|144673|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=336bp|location=Sequence derived from alignment at Contig_183:3573..3908- (Tribonema minus UTEX_B_3156 )
CTGCCGCCGGCATCGCTTCCTCGCCTCATCGGCAAGAACGGCTCCAATAT CAACAACCTGCGCACCACAACCGGTGCCAGAATCTCCGTAGAGGACAACA GCACCGGCCGTGTGACCATTAACGGTCCTGCTGAAGCTGTCATCAAGGCT AAGGAAGCTCTGGCAACGTTCTCTCGGGAGTGGTCTGCGGAGAAAGACTC AGCAGAAGTGGCCGTTCCGGATCGCCTCATGCGAGTGATCATTGGAAAGG GCGGGGCGGGGGTGCGCGCTATACAGGAGCAGTGCATGGGCGTGCGAATC GACTGCGACAGGACGGCGGGCGTGGTGCGCATCAGG
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Coding sequence (CDS) from alignment at Contig_183:3573..3908-

>mRNA_16681 ID=mRNA_16681|Name=jgi.p|Trimin1|144673|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=336bp|location=Sequence derived from alignment at Contig_183:3573..3908- (Tribonema minus UTEX_B_3156 )
CTGCCGCCGGCATCGCTTCCTCGCCTCATCGGCAAGAACGGCTCCAATAT
CAACAACCTGCGCACCACAACCGGTGCCAGAATCTCCGTAGAGGACAACA
GCACCGGCCGTGTGACCATTAACGGTCCTGCTGAAGCTGTCATCAAGGCT
AAGGAAGCTCTGGCAACGTTCTCTCGGGAGTGGTCTGCGGAGAAAGACTC
AGCAGAAGTGGCCGTTCCGGATCGCCTCATGCGAGTGATCATTGGAAAGG
GCGGGGCGGGGGTGCGCGCTATACAGGAGCAGTGCATGGGCGTGCGAATC
GACTGCGACAGGACGGCGGGCGTGGTGCGCATCAGG
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