mRNA_16672 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|134851
Unique NamemRNA_16672
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|134851 vs. uniprot
Match: A0A836CHH9_9STRA (WW domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH9_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.290e-66
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1
Query:    1 DEDYIILEEEIDPHYTPSAQEIAEYAEWLGLDADRDASLLWICIEGLKAPLPENWKPVQDLGTNEIYYFNLATGESTWDHPCDEHYIRVFEEER 282
            DEDYIILEEEIDPHYTPSAQEIAEYAEWLGLDADRDASLLWICIEGLKAPLPENWKPVQDLGTNEIYYFNLATGESTWDHPCDEHYIRVFEEER
Sbjct:    1 DEDYIILEEEIDPHYTPSAQEIAEYAEWLGLDADRDASLLWICIEGLKAPLPENWKPVQDLGTNEIYYFNLATGESTWDHPCDEHYIRVFEEER 94          
BLAST of jgi.p|Trimin1|134851 vs. uniprot
Match: A0A835Z5F1_9STRA (WW domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5F1_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.890e-40
Identity = 57/92 (61.96%), Postives = 75/92 (81.52%), Query Frame = 1
Query:    7 DYIILEEEIDPHYTPSAQEIAEYAEWLGLDADRDASLLWICIEGLKAPLPENWKPVQDLGTNEIYYFNLATGESTWDHPCDEHYIRVFEEER 282
            D IILEEEIDP+Y P+ +E+ EYA+WLG+D D+D  + WI  EGLKAPLPE+WKP + + T EIYYFN  TG+STWDHPCD++Y +++EEE+
Sbjct:   32 DSIILEEEIDPNYVPTEEEVMEYAKWLGMDLDKDRGMFWIAKEGLKAPLPEHWKPCKTVDTEEIYYFNFLTGDSTWDHPCDDYYRKLYEEEK 123          
BLAST of jgi.p|Trimin1|134851 vs. uniprot
Match: A0A8K1FED1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FED1_PYTOL)

HSP 1 Score: 135 bits (339), Expect = 4.390e-38
Identity = 57/92 (61.96%), Postives = 72/92 (78.26%), Query Frame = 1
Query:    7 DYIILEEEIDPHYTPSAQEIAEYAEWLGLDADRDASLLWICIEGLKAPLPENWKPVQDLGTNEIYYFNLATGESTWDHPCDEHYIRVFEEER 282
            D ++LEE+IDP+Y PS  E+ EYA WLGLD + D  L WI  EGLKAPLP NWKP + L +NEIYYFN ATG+STWDHPCDEHY +++++ +
Sbjct:   10 DSVVLEEQIDPNYEPSDDEVLEYALWLGLDVNVDRDLFWIAREGLKAPLPANWKPCRTLDSNEIYYFNFATGKSTWDHPCDEHYKKLYQDHK 101          
BLAST of jgi.p|Trimin1|134851 vs. uniprot
Match: L1JFH0_GUITC (WW domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JFH0_GUITC)

HSP 1 Score: 126 bits (317), Expect = 9.590e-36
Identity = 55/90 (61.11%), Postives = 69/90 (76.67%), Query Frame = 1
Query:   13 IILEEEIDPHYTPSAQEIAEYAEWLGLDADRDASLLWICIEGLKAPLPENWKPVQDLGTNEIYYFNLATGESTWDHPCDEHYIRVFEEER 282
            ++LEEE+   Y P+  EI EYA+WLG+D D D +L WI  EGLKAPLPENWKP +  G +EIYYFN ATGES WDHPCDE+Y  +F++E+
Sbjct:   18 VVLEEELPEDYEPTEDEILEYAKWLGMDPDEDKALFWIAREGLKAPLPENWKPCK-TGDDEIYYFNFATGESVWDHPCDEYYRNLFKDEK 106          
BLAST of jgi.p|Trimin1|134851 vs. uniprot
Match: A0A7S1XUY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUY8_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.590e-35
Identity = 53/90 (58.89%), Postives = 69/90 (76.67%), Query Frame = 1
Query:   13 IILEEEIDPHYTPSAQEIAEYAEWLGLDADRDASLLWICIEGLKAPLPENWKPVQDLGTNEIYYFNLATGESTWDHPCDEHYIRVFEEER 282
            I+LEEEIDP+YTP+ +E+ EYA WL +D ++D  L WI  EGLKAPLP+ WKP +   T EIYYFN + G+STWDHPCDE+Y  ++EE +
Sbjct:   72 IVLEEEIDPNYTPTEEEVLEYARWLRMDLEKDRDLFWIAREGLKAPLPKEWKPCKTRDTEEIYYFNFSNGQSTWDHPCDEYYRSLYEEHK 161          
BLAST of jgi.p|Trimin1|134851 vs. uniprot
Match: A0A7S1GA04_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GA04_9STRA)

HSP 1 Score: 130 bits (327), Expect = 2.650e-35
Identity = 58/88 (65.91%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    7 DYIILEEEIDPHYTPSAQEIAEYAEWLGLDADRDASLLWICIEGLKAPLPENWKPVQDLGTNEIYYFNLATGESTWDHPCDEHYIRVF 270
            D IILEEEIDP Y P+  E  EYA+WLG+D + D  LL+I  EGLKAPLPENWKP +   TNEIYYFN A+GESTWDHPCDE+Y + +
Sbjct:   45 DSIILEEEIDPSYEPTEDEAIEYAKWLGMDIEEDRDLLFIAREGLKAPLPENWKPCKTTDTNEIYYFNFASGESTWDHPCDEYYRQQY 132          
BLAST of jgi.p|Trimin1|134851 vs. uniprot
Match: A0A8J2SJ42_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJ42_9STRA)

HSP 1 Score: 136 bits (342), Expect = 3.190e-35
Identity = 60/92 (65.22%), Postives = 73/92 (79.35%), Query Frame = 1
Query:    7 DYIILEEEIDPHYTPSAQEIAEYAEWLGLDADRDASLLWICIEGLKAPLPENWKPVQDLGTNEIYYFNLATGESTWDHPCDEHYIRVFEEER 282
            D IILEEEIDP+Y PS  EI EYA+WLG+D  +D  L WI  EGLKAPLPE+WKP +   T+EIYYFN ++GESTWDHPCDE+Y  ++EE+R
Sbjct:   16 DSIILEEEIDPNYVPSQDEIDEYAKWLGMDLQQDKDLQWIAREGLKAPLPEHWKPCKTTDTDEIYYFNFSSGESTWDHPCDEYYRTLYEEQR 107          
BLAST of jgi.p|Trimin1|134851 vs. uniprot
Match: A0A2D4BW60_PYTIN (WW domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BW60_PYTIN)

HSP 1 Score: 134 bits (337), Expect = 3.650e-35
Identity = 57/92 (61.96%), Postives = 70/92 (76.09%), Query Frame = 1
Query:    7 DYIILEEEIDPHYTPSAQEIAEYAEWLGLDADRDASLLWICIEGLKAPLPENWKPVQDLGTNEIYYFNLATGESTWDHPCDEHYIRVFEEER 282
            D I+LEEEIDP+Y PS +E+ EYA WLG+D + +  L WI  EGLKAPLPENWKP +   T EIYYFN ATG+STWDHPCDE Y  +++E +
Sbjct:    7 DSIVLEEEIDPNYEPSEREVLEYASWLGMDLENEQDLFWIAREGLKAPLPENWKPCKTTDTEEIYYFNFATGQSTWDHPCDEFYRNLYDEHK 98          
BLAST of jgi.p|Trimin1|134851 vs. uniprot
Match: A0A482S029_9ARCH (WW domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S029_9ARCH)

HSP 1 Score: 124 bits (311), Expect = 3.850e-35
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 1
Query:    4 EDYIILEEEIDPHYTPSAQEIAEYAEWLGLDADRDASLLWICIEGLKAPLPENWKPVQDLGTNEIYYFNLATGESTWDHPC 246
            +D I+LEEEIDP+Y PS QE+ +YA+W+G+D D D  L WI  EGL APLP NWKP +   T++IYYFN ATGESTWDHPC
Sbjct:   13 QDSIVLEEEIDPNYVPSEQEVVDYAKWMGMDLDADKDLFWIAREGLMAPLPTNWKPCKTKDTDDIYYFNFATGESTWDHPC 93          
BLAST of jgi.p|Trimin1|134851 vs. uniprot
Match: A0A8K1CGE3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGE3_PYTOL)

HSP 1 Score: 135 bits (340), Expect = 6.040e-35
Identity = 58/92 (63.04%), Postives = 70/92 (76.09%), Query Frame = 1
Query:    7 DYIILEEEIDPHYTPSAQEIAEYAEWLGLDADRDASLLWICIEGLKAPLPENWKPVQDLGTNEIYYFNLATGESTWDHPCDEHYIRVFEEER 282
            D I+LEEEIDP+Y PS +E+ EYA WLG+D D +  L WI  EGLKAPLPENWKP +   T EIYYFN ATG+STWDHPCDE Y  +++E +
Sbjct:    7 DSIVLEEEIDPNYEPSEKEVLEYASWLGMDLDAEQDLFWIAREGLKAPLPENWKPCKTTDTEEIYYFNFATGQSTWDHPCDEFYRNLYDEHK 98          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|134851 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CHH9_9STRA1.290e-66100.00WW domain-containing protein (Fragment) n=1 Tax=Tr... [more]
A0A835Z5F1_9STRA1.890e-4061.96WW domain-containing protein (Fragment) n=1 Tax=Tr... [more]
A0A8K1FED1_PYTOL4.390e-3861.96Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
L1JFH0_GUITC9.590e-3661.11WW domain-containing protein n=1 Tax=Guillardia th... [more]
A0A7S1XUY8_9STRA2.590e-3558.89Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1GA04_9STRA2.650e-3565.91Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A8J2SJ42_9STRA3.190e-3565.22Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2D4BW60_PYTIN3.650e-3561.96WW domain-containing protein n=1 Tax=Pythium insid... [more]
A0A482S029_9ARCH3.850e-3564.20WW domain-containing protein n=1 Tax=archaeon TaxI... [more]
A0A8K1CGE3_PYTOL6.040e-3563.04Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_219contigContig_219:121640..122150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|134851|gw1.219.4.1
BRITEko00000,ko00001,ko04812
KEGG Pathwayko04260,ko04261,ko05416,map04260,map04261,map05416
KEGG koko:K14480,ko:K17751
Descriptionmotor activity
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5022@1|root,KOG0161@2759|Eukaryota,3QAC2@4776|Peronosporales
Evalue4.67e-35
Seed ortholog4792.ETI54471
Hectar predicted targeting categoryother localisation
TranscriptId135173
TrackFilteredModels1
ProteinId134851
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134851gene_16672Tribonema minus UTEX_B_3156 geneContig_219 121640..122150 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16672_1exon_16672_1Tribonema minus UTEX_B_3156 exonContig_219 121640..121747 +
exon_16672_2exon_16672_2Tribonema minus UTEX_B_3156 exonContig_219 121977..122150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16672CDS_16672Tribonema minus UTEX_B_3156 CDSContig_219 121640..121747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134851Trimin1|134851|gw1.219.4.1Tribonema minus UTEX_B_3156 polypeptideContig_219 121640..122150 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16672 ID=mRNA_16672|Name=jgi.p|Trimin1|134851|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=282bp|location=Sequence derived from alignment at Contig_219:121640..122150+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACGAGGACTATATCATACTTGAGGAAGAAATAGACCCCCACTACACCCC
GAGTGCGCAGGAGATCGCGGAGTACGCTGAGTGGCTGGGACTGGATGCCG
ACAGAGATGCCAGCCTGCTGTGGATTTGCATCGAGGGGCTTAAGGCGCCG
CTGCCAGAGAACTGGAAGCCCGTGCAGGACCTGGGCACCAATGAGATATA
TTACTTCAACTTGGCAACAGGGGAAAGTACTTGGGACCATCCCTGTGACG
AGCACTATATCCGGGTGTTTGAGGAGGAGAGA
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protein sequence of jgi.p|Trimin1|134851

>Trimin1|134851|gw1.219.4.1 ID=Trimin1|134851|gw1.219.4.1|Name=jgi.p|Trimin1|134851|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=94bp
DEDYIILEEEIDPHYTPSAQEIAEYAEWLGLDADRDASLLWICIEGLKAP
LPENWKPVQDLGTNEIYYFNLATGESTWDHPCDEHYIRVFEEER
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mRNA from alignment at Contig_219:121640..122150+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16672 ID=mRNA_16672|Name=jgi.p|Trimin1|134851|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=511bp|location=Sequence derived from alignment at Contig_219:121640..122150+ (Tribonema minus UTEX_B_3156 )
GACGAGGACTATATCATACTTGAGGAAGAAATAGACCCCCACTACACCCC GAGTGCGCAGGAGATCGCGGAGTACGCTGAGTGGCTGGGACTGGATGCCG ACAGAGATGTGAGTGCTGCTGCACCTGCTGTCAACTAGAATACCTTCGCG TTCAACAGATTTTTGGCTGCTGCTGCCAGTTGTTTGAGTGTCGAGGCTAC ATTTACAAGTTGTCAGTGGTCGGCTCCTGGGGCTTGCACGCGCATGGCAC ATGCAGCAGTGGTCCTGACATCATGCGTGCATATAAGTGCCAACTGATCA TTCAATGCTCACCTTGGTCATGCACATTGCCCCACAGGCCAGCCTGCTGT GGATTTGCATCGAGGGGCTTAAGGCGCCGCTGCCAGAGAACTGGAAGCCC GTGCAGGACCTGGGCACCAATGAGATATATTACTTCAACTTGGCAACAGG GGAAAGTACTTGGGACCATCCCTGTGACGAGCACTATATCCGGGTGTTTG AGGAGGAGAGA
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Coding sequence (CDS) from alignment at Contig_219:121640..122150+

>mRNA_16672 ID=mRNA_16672|Name=jgi.p|Trimin1|134851|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=282bp|location=Sequence derived from alignment at Contig_219:121640..122150+ (Tribonema minus UTEX_B_3156 )
GACGAGGACTATATCATACTTGAGGAAGAAATAGACCCCCACTACACCCC
GAGTGCGCAGGAGATCGCGGAGTACGCTGAGTGGCTGGGACTGGATGCCG
ACAGAGATGCCAGCCTGCTGTGGATTTGCATCGAGGGGCTTAAGGCGCCG
CTGCCAGAGAACTGGAAGCCCGTGCAGGACCTGGGCACCAATGAGATATA
TTACTTCAACTTGGCAACAGGGGAAAGTACTTGGGACCATCCCTGTGACG
AGCACTATATCCGGGTGTTTGAGGAGGAGAGA
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