mRNA_16651 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|180488
Unique NamemRNA_16651
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|180488 vs. uniprot
Match: A0A835ZAK8_9STRA (Solute carrier family 25 member 45-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAK8_9STRA)

HSP 1 Score: 539 bits (1388), Expect = 2.010e-193
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 1
Query:    1 VAFAAGLTSGCAGILVGQPFDTVKVRLQTAPLGAYSGPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASKVSRVREPQLRLTTQEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIFFRGLGTIMVRAFPVNAVIFPIYEVHH 828
            VAFAAGLTSGCAGILVGQPFDTVKVRLQTAPLGAYSGPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASKVSRVREPQLRLTTQEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIFFRGLGTIMVRAFPVNAVIFPIYEVHH
Sbjct:    1 VAFAAGLTSGCAGILVGQPFDTVKVRLQTAPLGAYSGPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASKVSRVREPQLRLTTQEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIFFRGLGTIMVRAFPVNAVIFPIYEVHH 276          
BLAST of jgi.p|Trimin1|180488 vs. uniprot
Match: A0A6H5JAK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAK7_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 6.580e-74
Identity = 137/286 (47.90%), Postives = 174/286 (60.84%), Query Frame = 1
Query:    7 FAAGLTSGCAGILVGQPFDTVKVRLQTAPLGAYS---------GPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASKVSRVREPQLRLTTQEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEK-GAKEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRI-----FFRGLGTIMVRAFPVNAVIFPIYE 819
            F AG+ SG +GI+VGQPFDT+KVRLQT  L A +         G + C  +TV KEGV ALFKG+  PLASA +VNAI F AY Q+ +V   R     L +   FV G+FAG CQ V+++PT+ IK KLQ+   A  +  L+Y+G +DCA  +  TQG+R L  G  AT  R+ PA G+YF+ YE VK  L+ + G  E  S+F AGG+AG  SWF   P DV+KS QQA  D       S+ AC R +Y   G  I     FFRG+ T +VRA PVNA IFP +E
Sbjct:   49 FLAGVVSGISGIVVGQPFDTIKVRLQTQDLPAIAPNQPQPQAKGAMACAVETVSKEGVLALFKGMSTPLASAALVNAICFGAYAQSQRVEERRRNAELLWS---FVGGSFAGLCQAVIIIPTDIIKIKLQIQVGAPGSSNLKYRGPVDCAMSIFNTQGVRGLFRGSPATAIRDTPAMGLYFASYEAVKDRLESRWGFGEQASSFWAGGLAGALSWFVSYPFDVVKSVQQAAADPMDPNTRSMTACFRHVYNTAGGGIPGVSRFFRGVSTTVVRAVPVNAAIFPTFE 331          
BLAST of jgi.p|Trimin1|180488 vs. uniprot
Match: A0A835Z6G9_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6G9_9STRA)

HSP 1 Score: 225 bits (574), Expect = 1.120e-69
Identity = 131/252 (51.98%), Postives = 158/252 (62.70%), Query Frame = 1
Query:   94 LGAYSGPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASK----------VSRVREPQLRLTTQEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIFFRGLGTIMVRAFPVNAVIFPIYE 819
            L  YSG L+C R TV KEG  ALFKG  PPLASAP +NAIAF AY +A++          ++  R     L+  E F AG+ AGACQTVV+LP++NIKTKLQV   +  + +L+YKG +DCA QLVRTQG R+LLAGGTATV RE+PA G YFSVYE  +A L+ +GA EG ++FAAGG+AGCSSW AIAP+D IKSRQQ                                     +RAFPVNA IFP YE
Sbjct:   30 LHTYSGALQCCRQTVSKEGFGALFKGCIPPLASAPFINAIAFTAYARANEWLLSRHDGKGMAGRRAEGSGLSFWETFAAGSCAGACQTVVLLPSDNIKTKLQVQVGSLHSSQLRYKGPLDCARQLVRTQGPRALLAGGTATVCRELPALGTYFSVYEHSRARLRRRGAGEGFASFAAGGLAGCSSWLAIAPMDTIKSRQQ-------------------------------------LRAFPVNAAIFPTYE 244          
BLAST of jgi.p|Trimin1|180488 vs. uniprot
Match: H3GBF0_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GBF0_PHYRM)

HSP 1 Score: 212 bits (540), Expect = 2.220e-64
Identity = 123/273 (45.05%), Postives = 158/273 (57.88%), Query Frame = 1
Query:    1 VAFAAGLTSGCAGILVGQPFDTVKVRLQTAPLGAYSGPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASKVSRVREPQLRLTTQEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIFFRGLGTIMVRAFPVNAVIFPIYE 819
            V  AAG   GCAG++VGQPFDTVKVRLQ      Y+G L C R T+  EG    FKG+  PL  +   NA+ FA Y +  K+      +  LT+  VF AGA  G  QTV + P E IK +LQV    RS+   QY+G +DC   ++R +G+  L  G T T WREVP++ +YF +YE  K ++ +KG  +  S   AGG+AG +SW    P+DVIKS  Q +          ++  AR +YR GG RIFF GLGT  VRAFP NAV F  YE
Sbjct:   12 VDLAAGTVGGCAGVIVGQPFDTVKVRLQIQSK-FYNGALDCTRKTLQHEGFQGFFKGMTSPLIGSAATNAVMFAVYERTLKMIDDTPDKPSLTS--VFYAGAIGGFWQTVPLAPAELIKCRLQVQDGRRSS---QYRGPMDCIRHIIRCRGVSGLFLGFTCTQWREVPSFAVYFWLYEYTKRMMLDKGINDTTSMLTAGGVAGVASWVVSYPMDVIKSAIQTLPVNHKPGEHKIMHQARVLYRMGGWRIFFSGLGTACVRAFPCNAVTFYAYE 278          
BLAST of jgi.p|Trimin1|180488 vs. uniprot
Match: A0A8K1FBZ8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBZ8_PYTOL)

HSP 1 Score: 203 bits (517), Expect = 8.100e-61
Identity = 119/275 (43.27%), Postives = 151/275 (54.91%), Query Frame = 1
Query:    1 VAFAAGLTSGCAGILVGQPFDTVKVRLQTAPLGAYSGPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASKV--SRVREPQLRLTTQEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIFFRGLGTIMVRAFPVNAVIFPIYE 819
            V FA+G+  GC+GI+VGQPFDTVKVRLQT     Y GP+ C+R T H EG    FKG+  PL  +   NAI FA Y +  ++     + P+L      VF AG   G  Q   V PTE IK +LQV     S+    Y+G  DC   + +  G+R L  G   T+ REVPA+G YF  YE  K  + E G     +   AGG+AG  SW    P DV+KS  Q + +    E  ++    R +YR GG RIF +GL T +VRAFPVNAV F  YE
Sbjct:   20 VDFASGVVGGCSGIIVGQPFDTVKVRLQTHST-FYKGPIDCVRQTFHHEGARGFFKGMSSPLFGSAWTNAIMFATYERTLRLIDDNAQSPKL----SSVFTAGLVGGFFQCTAVTPTELIKCRLQVQDGHESS---HYRGPADCVKHIYKRNGIRGLFLGYPITLCREVPAFGFYFFAYEYAKRRMTENGVSPHTAMLTAGGLAGVGSWIIAYPADVVKSSIQTVAEDARPEEKTMAYQIRRLYRLGGWRIFVKGLETAVVRAFPVNAVTFFCYE 286          
BLAST of jgi.p|Trimin1|180488 vs. uniprot
Match: A0A024GRU4_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GRU4_9STRA)

HSP 1 Score: 201 bits (510), Expect = 6.610e-60
Identity = 111/268 (41.42%), Postives = 152/268 (56.72%), Query Frame = 1
Query:   16 GLTSGCAGILVGQPFDTVKVRLQTAPLGAYSGPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASKVSRVREPQLRLTTQEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIFFRGLGTIMVRAFPVNAVIFPIYE 819
            G+T+GCAG+ VGQPFDT+KVRLQT     Y GP+ C + T   EG+   FKGL  PL  +   NAI F+ Y +A K     E    L +  VF+AG   G CQT+ V PT+ IK +LQV    +   +  Y+G IDC   + +  G R    G  AT+ RE P++G YF  YE+ K  +   G  +  +   AGG++G  SW    PLDV+KS  Q +    +++   ++   + +Y +GG RIF RGL T ++RAFPVNAV F  YE
Sbjct:   14 GVTAGCAGVFVGQPFDTIKVRLQTHGT-FYKGPIDCAKQTFKHEGIHGFFKGLSSPLIGSACTNAIVFSIYEKALKYLGTDEKHPSLDS--VFIAGCLGGFCQTIAVTPTDLIKCRLQVQDGHQ---RNHYRGPIDCIRHVYQRNGSRGFYLGFNATILRETPSFGFYFYTYEKTKRAMVSHGFNDNTAMLCAGGLSGVGSWTLSYPLDVVKSSIQTLPIDATRKEKQMMYQVKSLYAKGGVRIFVRGLETAVLRAFPVNAVTFFCYE 275          
BLAST of jgi.p|Trimin1|180488 vs. uniprot
Match: M4BKU0_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BKU0_HYAAE)

HSP 1 Score: 198 bits (503), Expect = 8.380e-59
Identity = 119/270 (44.07%), Postives = 151/270 (55.93%), Query Frame = 1
Query:   13 AGLTSGCAGILVGQPFDTVKVRLQTAPLGAYSGPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASKVSRVREPQLRLTT-QEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIFFRGLGTIMVRAFPVNAVIFPIYE 819
            AG   G AG++VGQPFDTVKVRLQT     Y+G L C R T   EG+   FKG+  P+  +   NA+ FA Y Q  K+  +    L+  T   VF+AGA  G  QT+ + P E IK +LQV     ST   QY+G +DC   +++ +G R L  G T T WREVP++ +YF +YE  K  + + G     S   AGG+AG +SW    P DVIKS  Q +          +   AR +YR GG RIFF GLGT  VRAFP NAV F  YE
Sbjct:   16 AGTIGGIAGVVVGQPFDTVKVRLQTHSK-YYNGALDCARQTFKHEGMLGFFKGMTSPVVGSAATNAVMFAVYEQTLKM--IENDVLQTPTLTSVFLAGAVGGFWQTIPLAPAELIKCRLQVQDGRTST---QYRGPMDCIRHVLKVKGTRGLFLGFTCTQWREVPSFAVYFWLYEYTKRKMIDGGINPTPSMLTAGGVAGVASWVVSYPFDVIKSAIQTLPVNHKPGEHKIAYQARQLYRLGGWRIFFSGLGTACVRAFPCNAVTFYGYE 279          
BLAST of jgi.p|Trimin1|180488 vs. uniprot
Match: G4ZMR7_PHYSP (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=G4ZMR7_PHYSP)

HSP 1 Score: 195 bits (495), Expect = 1.290e-57
Identity = 117/269 (43.49%), Postives = 149/269 (55.39%), Query Frame = 1
Query:   13 AGLTSGCAGILVGQPFDTVKVRLQTAPLGAYSGPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASKVSRVREPQLRLTTQEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIFFRGLGTIMVRAFPVNAVIFPIYE 819
            AG   G AG++VGQPFDTVKVRLQT     Y+G L C R T   EG    F+G+  PL  +   NA+ FA Y +  K+  + +     T + VF AGA  G  QTV + P E IK +LQV    RS+   QY+G +DC   + + +G   L  G T T+WREVP++ +YF +YE  K  + + G     S   AGG+AG +SW    P DVIKS  Q +          +   AR +YR GG RIFF GLGT  VRAFP NAV F  YE
Sbjct:   16 AGTVGGIAGVVVGQPFDTVKVRLQTYSK-YYNGALDCTRQTWKHEGFQGFFRGMTSPLIGSAATNAVMFAVYERTLKM--IDDNPQNPTLKSVFYAGAVGGFWQTVPLAPAELIKCRLQVQDGRRSS---QYRGPMDCIRHIFKVRGTPGLFLGFTCTLWREVPSFAVYFWLYEYTKRKMIDGGISPTPSMLTAGGVAGVASWVVSYPFDVIKSAIQTLPVNHKLGEHKIAYQARQLYRLGGWRIFFSGLGTACVRAFPCNAVTFYGYE 278          
BLAST of jgi.p|Trimin1|180488 vs. uniprot
Match: L8HEK6_ACACA (Carrier superfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HEK6_ACACA)

HSP 1 Score: 195 bits (495), Expect = 1.680e-57
Identity = 118/282 (41.84%), Postives = 158/282 (56.03%), Query Frame = 1
Query:    7 FAAGLTSGCAGILVGQPFDTVKVRLQTAPLGAYSGPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASKVSRVRE------PQLRLTTQEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEG----VSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIFFRGLGTIMVRAFPVNAVIFPIYEV 822
            F AG  +G AG+ VG PFDTVKVRLQT P GA+ GPL+C   T+ +EGV  L+KGL  P+    + N + F  Y    +     +      P L LT  ++ +AG  AG    ++  P E IK KLQV T      +L Y G IDC  ++VR  GL+ L  G  AT WR++P +G YF VYE ++    +   +      V    AGG+ G ++W    P+DVIKSR Q   +++      +  CA   YR  GHR+FF GLGT +VR+FPVNAVIF +YEV
Sbjct:   21 FLAGTLAGAAGVFVGHPFDTVKVRLQTLP-GAFKGPLQCFVQTLRREGVRGLYKGLSSPITGDSLTNCLVFGVYGLTRRAQLETDQTEEHFPLLSLT--QIGLAGGAAGLIGGLIQSPVELIKIKLQVQT-GTGAARL-YSGPIDCIKKIVRADGLKGLTRGLGATWWRDIPGFGAYFVVYEGLRRQWADDPLRPDDVSPVKQLVAGGLGGIAAWGISYPIDVIKSRLQTNPEYKG-----MWDCAVKSYRADGHRVFFTGLGTTVVRSFPVNAVIFLVYEV 292          
BLAST of jgi.p|Trimin1|180488 vs. uniprot
Match: A0A2D4BSP1_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSP1_PYTIN)

HSP 1 Score: 205 bits (521), Expect = 2.200e-57
Identity = 119/275 (43.27%), Postives = 154/275 (56.00%), Query Frame = 1
Query:    1 VAFAAGLTSGCAGILVGQPFDTVKVRLQTAPLGAYSGPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASKV--SRVREPQLRLTTQEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIFFRGLGTIMVRAFPVNAVIFPIYE 819
            V FA+G+  GC+GI+VGQPFDTVKVRLQT     Y G + C R T   EG    FKG+  PL  +   NAI FA Y +  ++     + P+LR     VF+AG F+G CQT  V PT+ IK +LQV     ++    Y+G  DC   + +  GLR L  G   T+ REVPA+  YF  YE  K  +  +G  +  +   AGG+AG  SW    P DV+KS  Q + +    E  ++    R +YR GG RIFF GL T +VRAFPVNAV F  YE
Sbjct:   48 VDFASGVVGGCSGIIVGQPFDTVKVRLQTHST-FYKGAIDCARQTYQHEGARGFFKGMMSPLFGSAWTNAIMFATYERTLRLIDDNSQTPELR----SVFIAGTFSGFCQTAAVTPTDLIKCRLQVQDGHETS---HYRGPADCVKHIYKRNGLRGLFLGYPVTLCREVPAFAFYFYAYEYAKRRMISEGVSDHTAMLTAGGLAGVGSWIIAYPADVLKSSIQTIAENARPEEKTIAYQTRRLYRLGGWRIFFNGLETAVVRAFPVNAVTFFCYE 314          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180488 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAK8_9STRA2.010e-193100.00Solute carrier family 25 member 45-like protein (F... [more]
A0A6H5JAK7_9PHAE6.580e-7447.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z6G9_9STRA1.120e-6951.98Mitochondrial carrier domain-containing protein n=... [more]
H3GBF0_PHYRM2.220e-6445.05Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A8K1FBZ8_PYTOL8.100e-6143.27Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024GRU4_9STRA6.610e-6041.42Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
M4BKU0_HYAAE8.380e-5944.07Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
G4ZMR7_PHYSP1.290e-5743.49Uncharacterized protein n=22 Tax=Peronosporaceae T... [more]
L8HEK6_ACACA1.680e-5741.84Carrier superfamily protein n=1 Tax=Acanthamoeba c... [more]
A0A2D4BSP1_PYTIN2.200e-5743.27Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_219contigContig_219:20429..24238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|180488|e_gw1.219.38.1
KEGG TC2.A.29.8
BRITEko00000,ko00001,ko02000
KEGG Pathwayko04714,map04714
KEGG koko:K15109
DescriptionMitochondrial carrier protein
COG categoryC
Max annot lvl4776|Peronosporales
EggNOG OGsKOG0762@1|root,KOG0762@2759|Eukaryota,3QBZH@4776|Peronosporales
Evalue3.63e-65
Seed ortholog164328.Phyra72614
Hectar predicted targeting categorysignal peptide
TranscriptId180810
TrackFilteredModels1
ProteinId180488
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180488gene_16651Tribonema minus UTEX_B_3156 geneContig_219 20429..24238 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180488Trimin1|180488|e_gw1.219.38.1Tribonema minus UTEX_B_3156 polypeptideContig_219 20429..24238 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16651_7exon_16651_7Tribonema minus UTEX_B_3156 exonContig_219 20429..20485 -
exon_16651_6exon_16651_6Tribonema minus UTEX_B_3156 exonContig_219 21359..21469 -
exon_16651_5exon_16651_5Tribonema minus UTEX_B_3156 exonContig_219 22065..22332 -
exon_16651_4exon_16651_4Tribonema minus UTEX_B_3156 exonContig_219 23046..23186 -
exon_16651_3exon_16651_3Tribonema minus UTEX_B_3156 exonContig_219 23486..23641 -
exon_16651_2exon_16651_2Tribonema minus UTEX_B_3156 exonContig_219 23914..23957 -
exon_16651_1exon_16651_1Tribonema minus UTEX_B_3156 exonContig_219 24185..24238 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16651CDS_16651Tribonema minus UTEX_B_3156 CDSContig_219 24185..24238 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16651 ID=mRNA_16651|Name=jgi.p|Trimin1|180488|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=831bp|location=Sequence derived from alignment at Contig_219:20429..24238- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGGCGTTCGCAGCTGGACTCACATCCGGGTGTGCTGGCATATTAGTCGG
TCAGCCATTTGACACAGTCAAGGTCAGGTTACAGACAGCTCCACTCGGCG
CATACTCTGGCCCGCTGCGCTGTTTGAGGGACACAGTCCATAAGGAAGGT
GTCACCGCCCTGTTCAAAGGACTAGGGCCGCCGCTGGCATCAGCACCCAT
AGTTAACGCCATCGCCTTCGCTGCATACGTGCAGGCTAGCAAGGTCAGTC
GTGTGCGGGAGCCGCAGTTGAGATTGACTACACAGGAGGTGTTTGTGGCT
GGAGCGTTTGCCGGCGCATGTCAGACGGTGGTGGTGTTGCCTACTGAAAA
CATCAAGACAAAGTTACAGGTGAACACATACGCAAGAAGTACCCTCAAGC
TGCAGTACAAAGGGGCCATCGACTGTGCCACTCAACTAGTGCGCACACAG
GGCCTGCGGTCCTTGCTAGCAGGTGGCACAGCCACAGTTTGGCGAGAAGT
TCCTGCATACGGCATCTACTTTAGTGTATATGAGCAGGTGAAGGCCCTTT
TGAAAGAAAAGGGAGCCAAGGAGGGGGTTTCTGCCTTTGCTGCTGGAGGC
ATAGCGGGGTGCTCAAGTTGGTTTGCCATCGCACCACTGGATGTGATCAA
GTCCAGGCAACAGGCTATGCAGGATTGGCGGTCAAAAGAAGCCAGCTCAT
TGGTGGCGTGCGCACGAGGCATGTACAGGGAGGGCGGACACAGAATATTC
TTCCGAGGCTTGGGCACCATCATGGTGCGCGCATTTCCAGTGAACGCGGT
TATCTTCCCCATTTACGAGGTGCACCATTAG
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protein sequence of jgi.p|Trimin1|180488

>Trimin1|180488|e_gw1.219.38.1 ID=Trimin1|180488|e_gw1.219.38.1|Name=jgi.p|Trimin1|180488|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=277bp
VAFAAGLTSGCAGILVGQPFDTVKVRLQTAPLGAYSGPLRCLRDTVHKEG
VTALFKGLGPPLASAPIVNAIAFAAYVQASKVSRVREPQLRLTTQEVFVA
GAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQ
GLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEGVSAFAAGG
IAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIF
FRGLGTIMVRAFPVNAVIFPIYEVHH*
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mRNA from alignment at Contig_219:20429..24238-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16651 ID=mRNA_16651|Name=jgi.p|Trimin1|180488|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3810bp|location=Sequence derived from alignment at Contig_219:20429..24238- (Tribonema minus UTEX_B_3156 )
GTGGCGTTCGCAGCTGGACTCACATCCGGGTGTGCTGGCATATTAGTCGG TCAGGTATGGTGGCGAGAAATATAATATTAAATCTCGCCCTCTGCACCCT CGTTGCATGTTCTGCCACTGTTAACTTCGGAAACTGCTGGTGCTGCTGAC ACGCGTGCGGCTGTGGTTTTTACTGACAACATAGGACAATATCTGGTTCT TGATGAGTTTGTTACCTCAATCTGACACTTTTCAATGCTGTCTTTGTGGT GCATTGGCTTTGAATGCATGTACACGAACAGCCATTTGACACAGTCAAGG TCAGGTTACAGACAGCTCCACTCGGGTAAGTGCCTCAGTGAGTCTTTGTG TGCATTGCTGGAATCACATGGCGCATGACGCTTGTGGGGTGCCATGTATT TTGTGCAGCTGTTCCGCTTTCTTACAGCCAGATTCTTCCCGTGCTTTTTC ATGCAGCAGCGTCGACACTCGCGCAAATCTCCTATGGGATCATCTGGCAG CTGATGCTGATGTTGACTTGCACAGCCACCTCACATACTGCACGTGCTGC ACACTTGTTTCAACTAACAAGTAATGATCGTCATTTGTCGTTCGCAGCGC ATACTCTGGCCCGCTGCGCTGTTTGAGGGACACAGTCCATAAGGAAGGTG TCACCGCCCTGTTCAAAGGACTAGGGCCGCCGCTGGCATCAGCACCCATA GTTAACGCCATCGCCTTCGCTGCATACGTGCAGGCTAGCAAGGTCAGTCG TGTGTGTCTGACCACGTGTGCATTGTGCATGGCACATGACCTGCTGTCTG CCTGTTCCGCTTGGGGCCACAACGCTGCACCAGCATATGTGGCAGGCCTC CTCATGCTCCACTGAGCGTTGATTTCACGCTTGCTATCCTCTTACATGGT GCCATCACAGATGACGACCGTAAACTGGCATGCTGCCGCATATACACATG TATACACTGGTGCGCCTGTATACACTGGGTCTTGCTACTCTTATCGTGCT TTGTGCAGTGGCTGATTGGCTTGAGACCAGAGCCGCAGCGCGGATTCAAC AGGCGGGAGCCGCAGTTGAGATTGACTACACAGGAGGTGTTTGTGGCTGG AGCGTTTGCCGGCGCATGTCAGACGGTGGTGGTGTTGCCTACTGAAAACA TCAAGACAAAGTTACAGGTGAACACATACGCAAGAAGTACCCTGTCACTG CTGTGATGATGCTCAGGGGGGCGGGTAGGCATGTAGGCATATGTTGTCAA GCCCATATTGCGCAGGGTATCTATGCTGGTGAGTTGGTATACAACTAAGA GTATGCGATAGGGTTTTGCCAGCATTTGAGCGCTGTGATGTATGCACCTC ACTTCATAGAAGTACTTCCTTTCAAGCTTGAAGTTTGTGAGCCACATACT CCGCCTGGCTTGACTGACACCTGTGGTAATTTGCACATGACGCCAACCCG TCAACCTTATGACATGGATCCTATGCCATTGTCTTTTTTTCAGTCACGTT CTGTATGGCAGTGTCATCTCTGTGCAACCATGCAGACGAGCCCGCAGAAT TGCTGCGTATTGTAGCGTGAATGTGAGGGCTGAAGTCTGACGAACCTGAC AGCTGCACTCTGAGACTTGGTTGAAGCCACTGCTGATATACGATACATGT TATGTGGTACTTCAAAGTGTGTTGTACACCACCTCAACAAAGTGCCCCTG CACCTTCCTTGCAGTTAAGTTGCATGAAACATAGACACATGCATACCATG TGAATGCACATCAGTGTTGCCGACGCGGTGCGCACTTTGCTCAAGTTTAC ACAATGGCTCGATTCATGGCACAAATCATTTGGCATCTCAAGGTCGTTTG CCTGCTGGTGTGATTGCTGGCATCCTGCAGGTGCAAGTAGGGAGCTTATC TAGCAGCAAGCTGCAGTACAAAGGGGCCATCGACTGTGCCACTCAACTAG TGCGCACACAGGGCCTGCGGTCCTTGCTAGCAGGTGGCACAGCCACAGTT TGGCGAGAAGTTCCTGCATACGGCATCTACTTTAGTGTATATGAGCAGGT GAAGGCCCTTTTGAAAGAAAAGGGAGCCAAGGAGGGGGTTTCTGCCTTTG CTGCTGGAGGCATAGCGGGGTGCTCAAGTTGGTTTGCCATCGCACCACTG GATGTGATCAAGTCCAGGCAACAGGTGAGGGTGAGGTTGGCACGTCACCC ACATGAACTTCGCGTATGCTGCACGGTGCGCACGCACGCGTTCATTGTTG TGTGTGTTGAGCTTAAGCCTGGGGTCGTGTGCAACTGTACCGCAACATGT TAAGCACCTTCAGTGACGTAATGCAATACAATTGCAACAATTACAGCAAA TGGAAGGTACAAGTGTGCATGAGTGTACAAGGTCACCTGATGGCATCATG TCATGTCTTTGACAGCATGTCAACAACGACCCGCATGGCCTTGCAGTTTT AGGCTCACTGCATGAGAATGCAATGTGGTTGAGTGACTCCGTGTCTGTTA AGATGAGCGAATAGCTGTATGTGTCTGACGCTACACTACGGCGCGATCAT CACATTCAACGATGCATTGCTGTTCTGCAGCGCGTGCAAGTGTGCATGCG CAAGCTACTGAGATGGTGGGATGCCATTGGCGTGATCACTGCCGTGATGA CATGCAGGTGTGAAGATGCACAAGCTGCCGTCAAAGTCATATCCTCAATA AAGACTGACTTGTGCCCTGAGATGAAGCGCGCATCACCATCATCTGTTTC TGTCACCATCATGTTGCAGGCTATGCAGGATTGGCGGTCAAAAGAAGCCA GCTCATTGGTGGCGTGCGCACGAGGCATGTACAGGGAGGGCGGACACAGA ATATTCTTCCGAGGCTTGGGCACCATCATGGTACGATTGCCGTCAAAGCA TCTTCGGCAGTTCACTGTCACCGTGTAGGATGTCGCTCTGAGATGACATA ATGAAAAACGAATCAAAAAGATCGTTGAGCTCTAGGTGACAAGGGATGGT TACATAATATTGTGTGCTGCGCATGCCCGCATGCCAGTCGTCAGTCAAGG ATGAGACAGTGTTGCTACGCTGCTGCAGATGTCGGCTTCACTGGTGTCAT TGATGTAGGCATGCAAGGCCAGAACAGGGCCCTTCTATATACCTGACACA AAGGATCCACACGGCAGCAATGCAGTCTTCAAGTGCTATCAGTATACCAG TACTTGCACGTGTGTACAGGGGATATTGTGCTGCCAATATTGTCCGCATG TGTATGAATGTATGGCTTGTACTTCAGTGCATAGTGAAGCAGTTGTGTAT ATGAAGGCTCTCACAGAGGCCGGCTGCTTGTTATCCGCATGTATCTATGT GTACATGACGTTTCTACATTATCGGCGGTACTAGTGTACTCAATTGCCTG TACAAGAGAATGAGCCGATACACTGTACTTGATCATATTCAGCATAGAGT GTGTGTTCTAACCCTTCAAACAAGGCACATGCGTCTGTGCTTTGACTTGC GTATTCGACAGGCAGAGCCTCCGGTGATGCTTTGTCATGACAGTGTCACC AATTCTCTCTGCGCCTTCACTGAAACAGAGGCTGCTGGTAGCAGGTACAT GTGTCCACATGTTATGGCACGCATGCTTCATTCATGTTTGCTGCACTTCG TTGACCATTGCATCCTCAGGGACAAATCTGTGTTGGGCACTGCACTTTGT TGCATGCTCCGTGTGGACACTGAAGTGCGCCGCTGTGTGTGTTTCGCCTG CAGGTGCGCGCATTTCCAGTGAACGCGGTTATCTTCCCCATTTACGAGGT GCACCATTAG
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Coding sequence (CDS) from alignment at Contig_219:20429..24238-

>mRNA_16651 ID=mRNA_16651|Name=jgi.p|Trimin1|180488|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=831bp|location=Sequence derived from alignment at Contig_219:20429..24238- (Tribonema minus UTEX_B_3156 )
GTGGCGTTCGCAGCTGGACTCACATCCGGGTGTGCTGGCATATTAGTCGG
TCAGCCATTTGACACAGTCAAGGTCAGGTTACAGACAGCTCCACTCGGCG
CATACTCTGGCCCGCTGCGCTGTTTGAGGGACACAGTCCATAAGGAAGGT
GTCACCGCCCTGTTCAAAGGACTAGGGCCGCCGCTGGCATCAGCACCCAT
AGTTAACGCCATCGCCTTCGCTGCATACGTGCAGGCTAGCAAGGTCAGTC
GTGTGCGGGAGCCGCAGTTGAGATTGACTACACAGGAGGTGTTTGTGGCT
GGAGCGTTTGCCGGCGCATGTCAGACGGTGGTGGTGTTGCCTACTGAAAA
CATCAAGACAAAGTTACAGGTGAACACATACGCAAGAAGTACCCTCAAGC
TGCAGTACAAAGGGGCCATCGACTGTGCCACTCAACTAGTGCGCACACAG
GGCCTGCGGTCCTTGCTAGCAGGTGGCACAGCCACAGTTTGGCGAGAAGT
TCCTGCATACGGCATCTACTTTAGTGTATATGAGCAGGTGAAGGCCCTTT
TGAAAGAAAAGGGAGCCAAGGAGGGGGTTTCTGCCTTTGCTGCTGGAGGC
ATAGCGGGGTGCTCAAGTTGGTTTGCCATCGCACCACTGGATGTGATCAA
GTCCAGGCAACAGGCTATGCAGGATTGGCGGTCAAAAGAAGCCAGCTCAT
TGGTGGCGTGCGCACGAGGCATGTACAGGGAGGGCGGACACAGAATATTC
TTCCGAGGCTTGGGCACCATCATGGTGCGCGCATTTCCAGTGAACGCGGT
TATCTTCCCCATTTACGAGGTGCACCATTAG
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