mRNA_16651 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|180488 vs. uniprot
Match: A0A835ZAK8_9STRA (Solute carrier family 25 member 45-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAK8_9STRA) HSP 1 Score: 539 bits (1388), Expect = 2.010e-193 Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 1 Query: 1 VAFAAGLTSGCAGILVGQPFDTVKVRLQTAPLGAYSGPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASKVSRVREPQLRLTTQEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIFFRGLGTIMVRAFPVNAVIFPIYEVHH 828 VAFAAGLTSGCAGILVGQPFDTVKVRLQTAPLGAYSGPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASKVSRVREPQLRLTTQEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIFFRGLGTIMVRAFPVNAVIFPIYEVHH Sbjct: 1 VAFAAGLTSGCAGILVGQPFDTVKVRLQTAPLGAYSGPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASKVSRVREPQLRLTTQEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIFFRGLGTIMVRAFPVNAVIFPIYEVHH 276
BLAST of jgi.p|Trimin1|180488 vs. uniprot
Match: A0A6H5JAK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAK7_9PHAE) HSP 1 Score: 238 bits (608), Expect = 6.580e-74 Identity = 137/286 (47.90%), Postives = 174/286 (60.84%), Query Frame = 1 Query: 7 FAAGLTSGCAGILVGQPFDTVKVRLQTAPLGAYS---------GPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASKVSRVREPQLRLTTQEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEK-GAKEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRI-----FFRGLGTIMVRAFPVNAVIFPIYE 819 F AG+ SG +GI+VGQPFDT+KVRLQT L A + G + C +TV KEGV ALFKG+ PLASA +VNAI F AY Q+ +V R L + FV G+FAG CQ V+++PT+ IK KLQ+ A + L+Y+G +DCA + TQG+R L G AT R+ PA G+YF+ YE VK L+ + G E S+F AGG+AG SWF P DV+KS QQA D S+ AC R +Y G I FFRG+ T +VRA PVNA IFP +E Sbjct: 49 FLAGVVSGISGIVVGQPFDTIKVRLQTQDLPAIAPNQPQPQAKGAMACAVETVSKEGVLALFKGMSTPLASAALVNAICFGAYAQSQRVEERRRNAELLWS---FVGGSFAGLCQAVIIIPTDIIKIKLQIQVGAPGSSNLKYRGPVDCAMSIFNTQGVRGLFRGSPATAIRDTPAMGLYFASYEAVKDRLESRWGFGEQASSFWAGGLAGALSWFVSYPFDVVKSVQQAAADPMDPNTRSMTACFRHVYNTAGGGIPGVSRFFRGVSTTVVRAVPVNAAIFPTFE 331
BLAST of jgi.p|Trimin1|180488 vs. uniprot
Match: A0A835Z6G9_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6G9_9STRA) HSP 1 Score: 225 bits (574), Expect = 1.120e-69 Identity = 131/252 (51.98%), Postives = 158/252 (62.70%), Query Frame = 1 Query: 94 LGAYSGPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASK----------VSRVREPQLRLTTQEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIFFRGLGTIMVRAFPVNAVIFPIYE 819 L YSG L+C R TV KEG ALFKG PPLASAP +NAIAF AY +A++ ++ R L+ E F AG+ AGACQTVV+LP++NIKTKLQV + + +L+YKG +DCA QLVRTQG R+LLAGGTATV RE+PA G YFSVYE +A L+ +GA EG ++FAAGG+AGCSSW AIAP+D IKSRQQ +RAFPVNA IFP YE Sbjct: 30 LHTYSGALQCCRQTVSKEGFGALFKGCIPPLASAPFINAIAFTAYARANEWLLSRHDGKGMAGRRAEGSGLSFWETFAAGSCAGACQTVVLLPSDNIKTKLQVQVGSLHSSQLRYKGPLDCARQLVRTQGPRALLAGGTATVCRELPALGTYFSVYEHSRARLRRRGAGEGFASFAAGGLAGCSSWLAIAPMDTIKSRQQ-------------------------------------LRAFPVNAAIFPTYE 244
BLAST of jgi.p|Trimin1|180488 vs. uniprot
Match: H3GBF0_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GBF0_PHYRM) HSP 1 Score: 212 bits (540), Expect = 2.220e-64 Identity = 123/273 (45.05%), Postives = 158/273 (57.88%), Query Frame = 1 Query: 1 VAFAAGLTSGCAGILVGQPFDTVKVRLQTAPLGAYSGPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASKVSRVREPQLRLTTQEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIFFRGLGTIMVRAFPVNAVIFPIYE 819 V AAG GCAG++VGQPFDTVKVRLQ Y+G L C R T+ EG FKG+ PL + NA+ FA Y + K+ + LT+ VF AGA G QTV + P E IK +LQV RS+ QY+G +DC ++R +G+ L G T T WREVP++ +YF +YE K ++ +KG + S AGG+AG +SW P+DVIKS Q + ++ AR +YR GG RIFF GLGT VRAFP NAV F YE Sbjct: 12 VDLAAGTVGGCAGVIVGQPFDTVKVRLQIQSK-FYNGALDCTRKTLQHEGFQGFFKGMTSPLIGSAATNAVMFAVYERTLKMIDDTPDKPSLTS--VFYAGAIGGFWQTVPLAPAELIKCRLQVQDGRRSS---QYRGPMDCIRHIIRCRGVSGLFLGFTCTQWREVPSFAVYFWLYEYTKRMMLDKGINDTTSMLTAGGVAGVASWVVSYPMDVIKSAIQTLPVNHKPGEHKIMHQARVLYRMGGWRIFFSGLGTACVRAFPCNAVTFYAYE 278
BLAST of jgi.p|Trimin1|180488 vs. uniprot
Match: A0A8K1FBZ8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBZ8_PYTOL) HSP 1 Score: 203 bits (517), Expect = 8.100e-61 Identity = 119/275 (43.27%), Postives = 151/275 (54.91%), Query Frame = 1 Query: 1 VAFAAGLTSGCAGILVGQPFDTVKVRLQTAPLGAYSGPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASKV--SRVREPQLRLTTQEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIFFRGLGTIMVRAFPVNAVIFPIYE 819 V FA+G+ GC+GI+VGQPFDTVKVRLQT Y GP+ C+R T H EG FKG+ PL + NAI FA Y + ++ + P+L VF AG G Q V PTE IK +LQV S+ Y+G DC + + G+R L G T+ REVPA+G YF YE K + E G + AGG+AG SW P DV+KS Q + + E ++ R +YR GG RIF +GL T +VRAFPVNAV F YE Sbjct: 20 VDFASGVVGGCSGIIVGQPFDTVKVRLQTHST-FYKGPIDCVRQTFHHEGARGFFKGMSSPLFGSAWTNAIMFATYERTLRLIDDNAQSPKL----SSVFTAGLVGGFFQCTAVTPTELIKCRLQVQDGHESS---HYRGPADCVKHIYKRNGIRGLFLGYPITLCREVPAFGFYFFAYEYAKRRMTENGVSPHTAMLTAGGLAGVGSWIIAYPADVVKSSIQTVAEDARPEEKTMAYQIRRLYRLGGWRIFVKGLETAVVRAFPVNAVTFFCYE 286
BLAST of jgi.p|Trimin1|180488 vs. uniprot
Match: A0A024GRU4_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GRU4_9STRA) HSP 1 Score: 201 bits (510), Expect = 6.610e-60 Identity = 111/268 (41.42%), Postives = 152/268 (56.72%), Query Frame = 1 Query: 16 GLTSGCAGILVGQPFDTVKVRLQTAPLGAYSGPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASKVSRVREPQLRLTTQEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIFFRGLGTIMVRAFPVNAVIFPIYE 819 G+T+GCAG+ VGQPFDT+KVRLQT Y GP+ C + T EG+ FKGL PL + NAI F+ Y +A K E L + VF+AG G CQT+ V PT+ IK +LQV + + Y+G IDC + + G R G AT+ RE P++G YF YE+ K + G + + AGG++G SW PLDV+KS Q + +++ ++ + +Y +GG RIF RGL T ++RAFPVNAV F YE Sbjct: 14 GVTAGCAGVFVGQPFDTIKVRLQTHGT-FYKGPIDCAKQTFKHEGIHGFFKGLSSPLIGSACTNAIVFSIYEKALKYLGTDEKHPSLDS--VFIAGCLGGFCQTIAVTPTDLIKCRLQVQDGHQ---RNHYRGPIDCIRHVYQRNGSRGFYLGFNATILRETPSFGFYFYTYEKTKRAMVSHGFNDNTAMLCAGGLSGVGSWTLSYPLDVVKSSIQTLPIDATRKEKQMMYQVKSLYAKGGVRIFVRGLETAVLRAFPVNAVTFFCYE 275
BLAST of jgi.p|Trimin1|180488 vs. uniprot
Match: M4BKU0_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BKU0_HYAAE) HSP 1 Score: 198 bits (503), Expect = 8.380e-59 Identity = 119/270 (44.07%), Postives = 151/270 (55.93%), Query Frame = 1 Query: 13 AGLTSGCAGILVGQPFDTVKVRLQTAPLGAYSGPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASKVSRVREPQLRLTT-QEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIFFRGLGTIMVRAFPVNAVIFPIYE 819 AG G AG++VGQPFDTVKVRLQT Y+G L C R T EG+ FKG+ P+ + NA+ FA Y Q K+ + L+ T VF+AGA G QT+ + P E IK +LQV ST QY+G +DC +++ +G R L G T T WREVP++ +YF +YE K + + G S AGG+AG +SW P DVIKS Q + + AR +YR GG RIFF GLGT VRAFP NAV F YE Sbjct: 16 AGTIGGIAGVVVGQPFDTVKVRLQTHSK-YYNGALDCARQTFKHEGMLGFFKGMTSPVVGSAATNAVMFAVYEQTLKM--IENDVLQTPTLTSVFLAGAVGGFWQTIPLAPAELIKCRLQVQDGRTST---QYRGPMDCIRHVLKVKGTRGLFLGFTCTQWREVPSFAVYFWLYEYTKRKMIDGGINPTPSMLTAGGVAGVASWVVSYPFDVIKSAIQTLPVNHKPGEHKIAYQARQLYRLGGWRIFFSGLGTACVRAFPCNAVTFYGYE 279
BLAST of jgi.p|Trimin1|180488 vs. uniprot
Match: G4ZMR7_PHYSP (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=G4ZMR7_PHYSP) HSP 1 Score: 195 bits (495), Expect = 1.290e-57 Identity = 117/269 (43.49%), Postives = 149/269 (55.39%), Query Frame = 1 Query: 13 AGLTSGCAGILVGQPFDTVKVRLQTAPLGAYSGPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASKVSRVREPQLRLTTQEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIFFRGLGTIMVRAFPVNAVIFPIYE 819 AG G AG++VGQPFDTVKVRLQT Y+G L C R T EG F+G+ PL + NA+ FA Y + K+ + + T + VF AGA G QTV + P E IK +LQV RS+ QY+G +DC + + +G L G T T+WREVP++ +YF +YE K + + G S AGG+AG +SW P DVIKS Q + + AR +YR GG RIFF GLGT VRAFP NAV F YE Sbjct: 16 AGTVGGIAGVVVGQPFDTVKVRLQTYSK-YYNGALDCTRQTWKHEGFQGFFRGMTSPLIGSAATNAVMFAVYERTLKM--IDDNPQNPTLKSVFYAGAVGGFWQTVPLAPAELIKCRLQVQDGRRSS---QYRGPMDCIRHIFKVRGTPGLFLGFTCTLWREVPSFAVYFWLYEYTKRKMIDGGISPTPSMLTAGGVAGVASWVVSYPFDVIKSAIQTLPVNHKLGEHKIAYQARQLYRLGGWRIFFSGLGTACVRAFPCNAVTFYGYE 278
BLAST of jgi.p|Trimin1|180488 vs. uniprot
Match: L8HEK6_ACACA (Carrier superfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HEK6_ACACA) HSP 1 Score: 195 bits (495), Expect = 1.680e-57 Identity = 118/282 (41.84%), Postives = 158/282 (56.03%), Query Frame = 1 Query: 7 FAAGLTSGCAGILVGQPFDTVKVRLQTAPLGAYSGPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASKVSRVRE------PQLRLTTQEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEG----VSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIFFRGLGTIMVRAFPVNAVIFPIYEV 822 F AG +G AG+ VG PFDTVKVRLQT P GA+ GPL+C T+ +EGV L+KGL P+ + N + F Y + + P L LT ++ +AG AG ++ P E IK KLQV T +L Y G IDC ++VR GL+ L G AT WR++P +G YF VYE ++ + + V AGG+ G ++W P+DVIKSR Q +++ + CA YR GHR+FF GLGT +VR+FPVNAVIF +YEV Sbjct: 21 FLAGTLAGAAGVFVGHPFDTVKVRLQTLP-GAFKGPLQCFVQTLRREGVRGLYKGLSSPITGDSLTNCLVFGVYGLTRRAQLETDQTEEHFPLLSLT--QIGLAGGAAGLIGGLIQSPVELIKIKLQVQT-GTGAARL-YSGPIDCIKKIVRADGLKGLTRGLGATWWRDIPGFGAYFVVYEGLRRQWADDPLRPDDVSPVKQLVAGGLGGIAAWGISYPIDVIKSRLQTNPEYKG-----MWDCAVKSYRADGHRVFFTGLGTTVVRSFPVNAVIFLVYEV 292
BLAST of jgi.p|Trimin1|180488 vs. uniprot
Match: A0A2D4BSP1_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSP1_PYTIN) HSP 1 Score: 205 bits (521), Expect = 2.200e-57 Identity = 119/275 (43.27%), Postives = 154/275 (56.00%), Query Frame = 1 Query: 1 VAFAAGLTSGCAGILVGQPFDTVKVRLQTAPLGAYSGPLRCLRDTVHKEGVTALFKGLGPPLASAPIVNAIAFAAYVQASKV--SRVREPQLRLTTQEVFVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGAKEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYREGGHRIFFRGLGTIMVRAFPVNAVIFPIYE 819 V FA+G+ GC+GI+VGQPFDTVKVRLQT Y G + C R T EG FKG+ PL + NAI FA Y + ++ + P+LR VF+AG F+G CQT V PT+ IK +LQV ++ Y+G DC + + GLR L G T+ REVPA+ YF YE K + +G + + AGG+AG SW P DV+KS Q + + E ++ R +YR GG RIFF GL T +VRAFPVNAV F YE Sbjct: 48 VDFASGVVGGCSGIIVGQPFDTVKVRLQTHST-FYKGAIDCARQTYQHEGARGFFKGMMSPLFGSAWTNAIMFATYERTLRLIDDNSQTPELR----SVFIAGTFSGFCQTAAVTPTDLIKCRLQVQDGHETS---HYRGPADCVKHIYKRNGLRGLFLGYPVTLCREVPAFAFYFYAYEYAKRRMISEGVSDHTAMLTAGGLAGVGSWIIAYPADVLKSSIQTIAENARPEEKTIAYQTRRLYRLGGWRIFFNGLETAVVRAFPVNAVTFFCYE 314 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180488 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16651 ID=mRNA_16651|Name=jgi.p|Trimin1|180488|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=831bp|location=Sequence derived from alignment at Contig_219:20429..24238- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGGCGTTCGCAGCTGGACTCACATCCGGGTGTGCTGGCATATTAGTCGGback to top protein sequence of jgi.p|Trimin1|180488 >Trimin1|180488|e_gw1.219.38.1 ID=Trimin1|180488|e_gw1.219.38.1|Name=jgi.p|Trimin1|180488|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=277bp VAFAAGLTSGCAGILVGQPFDTVKVRLQTAPLGAYSGPLRCLRDTVHKEGback to top mRNA from alignment at Contig_219:20429..24238- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16651 ID=mRNA_16651|Name=jgi.p|Trimin1|180488|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3810bp|location=Sequence derived from alignment at Contig_219:20429..24238- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_219:20429..24238- >mRNA_16651 ID=mRNA_16651|Name=jgi.p|Trimin1|180488|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=831bp|location=Sequence derived from alignment at Contig_219:20429..24238- (Tribonema minus UTEX_B_3156 )back to top |