mRNA_16542 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|135290
Unique NamemRNA_16542
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|135290 vs. uniprot
Match: A0A835Z1Z9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z9_9STRA)

HSP 1 Score: 478 bits (1230), Expect = 1.160e-170
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1
Query:    1 IGLFLVTMAASYIDLATGDTMQGAAAPPSGLILQLADGTFVEPLLPQGSLLVMDGEAATQWMKAGTVAPRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMSGPDSGARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTGPTHCFDCIIQCPNGDGT 711
            IGLFLVTMAASYIDLATGDTMQGAAAPPSGLILQLADGTFVEPLLPQGSLLVMDGEAATQWMKAGTVAPRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMSGPDSGARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTGPTHCFDCIIQCPNGDGT
Sbjct:    1 IGLFLVTMAASYIDLATGDTMQGAAAPPSGLILQLADGTFVEPLLPQGSLLVMDGEAATQWMKAGTVAPRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMSGPDSGARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTGPTHCFDCIIQCPNGDGT 237          
BLAST of jgi.p|Trimin1|135290 vs. uniprot
Match: A0A836CJ88_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ88_9STRA)

HSP 1 Score: 325 bits (832), Expect = 3.190e-110
Identity = 158/169 (93.49%), Postives = 160/169 (94.67%), Query Frame = 1
Query:  205 PRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMSGPDSGARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTGPTHCFDCIIQCPNGDGT 711
            PRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLAR AA DIV+EAYA SAAVQASR LSFGEYRSQTYAAFHGGAGH AS  GCAPISSMSG DSGA R+LVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTGPTHCFDCIIQCPNGDGT
Sbjct:    1 PRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARAAADDIVAEAYAASAAVQASRSLSFGEYRSQTYAAFHGGAGHAASAVGCAPISSMSGSDSGASRVLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTGPTHCFDCIIQCPNGDGT 169          
BLAST of jgi.p|Trimin1|135290 vs. uniprot
Match: A0A836CGD7_9STRA (Copper transport protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGD7_9STRA)

HSP 1 Score: 222 bits (566), Expect = 1.860e-66
Identity = 121/238 (50.84%), Postives = 147/238 (61.76%), Query Frame = 1
Query:    4 GLFLVTMAASYIDLATGDTMQ--GAAAPPSGLILQLADGTFVEPLLPQGSLLVMDGEAATQWMKAGTVAPRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMS-----GPDSGARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTG-PTHCFDCIIQC 693
            GLFLV  AA Y +L +G  ++     AP +GL+++L DG  V P LPQGSLLVM+GEAAT+WM AG + P AP HEV+SL+L   ARAWFGRMYFP  AATL          EA  P         L+FGEYR QTY AF  G GH AS  GC P+++ +       +  A+R+L D GSC   E YCWM C  IPA L C  AD+VC NP DGT WPE+Y   +G P HC+DC+  C
Sbjct:  118 GLFLVMTAAEYFELESGARLELGHGTAPQTGLLVELPDGRRVRPQLPQGSLLVMNGEAATRWMDAGALRPHAPLHEVESLELTATARAWFGRMYFPPQAATLR--------GEALLP---------LTFGEYRQQTYEAFRSGQGHSASAVGCTPMTTSAMLQQQSHNISAQRVLADEGSCGVDEVYCWMSCMQIPAALTCPKADIVCINPTDGTLWPEDYVDSSGTPGHCYDCVPDC 338          
BLAST of jgi.p|Trimin1|135290 vs. uniprot
Match: A0A836CGZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGZ6_9STRA)

HSP 1 Score: 204 bits (518), Expect = 7.690e-60
Identity = 122/240 (50.83%), Postives = 147/240 (61.25%), Query Frame = 1
Query:    1 IGLFLVTMAASYIDLATGDTMQGA-AAPPSGLILQLADGTFVEPLLPQGSLLVMDGEAATQWMKAGTVAPRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMSGPDSGARRLLVDPGSCTAAEKY-CWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTG--PTHCFDCIIQCPNGDG 708
            IGLFLV   A YIDL TGD + G+     SGL+++ A G    P LP+G+L++M GEAAT+WM+AG V P+AP HEV SL + GAARAWFGRMYFP A A L     G+++ +A     AV A  GL+FG Y      AF  G GH AS AGC+P  S      GA R L D  SC AA K+ CWM C+AIP    CA + M CRNP +G FWP NY       P HC+DCI+QCP   G
Sbjct:  210 IGLFLVMTVAEYIDLPTGDRLAGSYRLHGSGLVVEHAPGQRAAPALPEGALVIMHGEAATRWMEAGAVKPKAPLHEVVSLDISGAARAWFGRMYFPLADAKLHLQD-GELLDDAIHN--AVDAG-GLTFGAYHQHASEAFRRGLGHSASAAGCSP--SAVSRHLGAARELADAASCKAAGKFFCWMSCQAIPKKARCAWSKMRCRNPKNGKFWPANYIDKKTKKPGHCYDCIVQCPKPGG 443          
BLAST of jgi.p|Trimin1|135290 vs. uniprot
Match: A0A835Z2A5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2A5_9STRA)

HSP 1 Score: 197 bits (500), Expect = 9.350e-60
Identity = 120/235 (51.06%), Postives = 143/235 (60.85%), Query Frame = 1
Query:    1 IGLFLVTMAASYIDLATGDTMQGAAAPP-SGLILQLADGTFVEPLLPQGSLLVMDGEAATQWMKAGTVAPRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMSGPDSGARRLLVDPGSCTAAEKY-CWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTG--PTHCFDCIIQC 693
            IGLFLV   A YI L TGD + G   P  SGL+++LA G    P LP+G+L++M GEAAT+WM+AG V P+AP HEV S+ + GAARAWFGRMYFP A A L R   G+++ +A     A  A  GL+FG Y      AF  G GH AS AGC+P  S      GA R L D  SC AA K+ CWM C+AIP    CA + M CRNP  G FWP NY       P HC DCI+QC
Sbjct:    1 IGLFLVMTVAEYISLPTGDRLFGNDRPHGSGLVVELAPGYQTAPALPEGALVIMHGEAATRWMEAGAVKPKAPLHEVVSMDVSGAARAWFGRMYFPLADAKL-RLQDGELLDDAIHN--AFDAG-GLTFGAYHQHAAEAFRRGQGHSASAAGCSP--SAVSRHLGAARELADAASCKAAGKFFCWMSCQAIPKKPKCAWSKMRCRNPKTGKFWPANYIDKKTKKPGHCSDCIVQC 229          
BLAST of jgi.p|Trimin1|135290 vs. uniprot
Match: A0A2J8A9L1_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A9L1_9CHLO)

HSP 1 Score: 175 bits (443), Expect = 1.250e-47
Identity = 104/246 (42.28%), Postives = 130/246 (52.85%), Query Frame = 1
Query:    1 IGLFLVTMAASYID----LATGDTMQGAAAPPS---GLILQLADGTFVEPLLPQGSLLVMDGEAATQWMKAGTVAPR----APPHEVQSLQLGGAARAWFGRMYFPDAAATL-ARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMSGPDSGARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTP--TGPTHCFDCIIQCP 696
            IGLFLV   A   D     ATGD+       P     L++QLADG  V P+LP G+LLVM+GE   +WM+  +V P     +P HEV S  L G  RAWFGRM+ P  AA L   D + D    +  P          +F EY+  TY  FH G G  AS AGC+P           RR LVD GSC   + YCWM C +I  ++ C+  +++C N  +G  WPENYTTP    P HCFDC + CP
Sbjct:  203 IGLFLVMSPAELFDRAAAAATGDSKAAGEGKPQRAQDLVVQLADGRIVTPVLPDGALLVMNGEGLMRWMRMPSVEPLHLPYSPLHEVLSSDLSGGVRAWFGRMFMPPHAARLQVEDGSKDNAHASSRP----------TFAEYQQHTYTLFHDGLGQAASAAGCSPT----------RRQLVDEGSCGNDKVYCWMSCMSITPNITCSKDEIICANIKNGLLWPENYTTPGRAMPGHCFDCTLMCP 428          
BLAST of jgi.p|Trimin1|135290 vs. uniprot
Match: A0A150GDT7_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GDT7_GONPE)

HSP 1 Score: 168 bits (425), Expect = 1.300e-44
Identity = 96/234 (41.03%), Postives = 125/234 (53.42%), Query Frame = 1
Query:   91 LILQLADGTFVEPLLPQGSLLVMDGEAATQWMKA-------GTVAPRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLA-----------------------RDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMSGPDSGARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTP--TGPTHCFDCIIQCP 696
            L++QLADG  V P+LP G+LLVM+GE  ++WM+        G   P +P HEV S  + G  RAWFGRM+ P A+A L                         DAA      ++A +AA   ++ ++FGEYR  TY  FH G GH AS  GC+P           RRLL D GSC A E YCW  C  +PA+  C  A+++C+N  +G  WP+NYTTP    P HC DC + CP
Sbjct:  279 LVVQLADGRIVAPVLPDGALLVMNGEGLSRWMRVPASSSALGGSQPYSPLHEVLSSDMAGGVRAWFGRMFMPPASAVLQVTDEPVAAVAVXXXXXXXXXXXXGDAARTPHISSFATAAATVTTK-MTFGEYRQHTYRMFHDGQGHAASAVGCSPT----------RRLLADEGSCGANEVYCWHSCMPMPANATCGKAEILCQNVNNGLLWPQNYTTPGVARPGHCKDCTLICP 501          
BLAST of jgi.p|Trimin1|135290 vs. uniprot
Match: A0A835XRK0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XRK0_9CHLO)

HSP 1 Score: 135 bits (341), Expect = 1.520e-33
Identity = 91/265 (34.34%), Postives = 123/265 (46.42%), Query Frame = 1
Query:    1 IGLFLVTMAASYIDLATGDTMQGAAAPPSG------LILQLADGTFVEPLLPQGSLLVMDGEAATQWMKA---GTVAPRAPPHEVQSLQLGGAARAWFGRMYFP--------------------DAAATLARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMSGPDSGARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTG----PTHCFDCIIQCP 696
            +GLFLV   A   D A       A A P G      L++ L DG+ V P LP+G+LLVM+GE   +WM+    G   P  P HEV S  +GG  RAWFGRM+ P                    D+ A++A  +   +           QA+R ++F +Y + T+ AF  G      + GC P          ARR LVD  SC A + YCWM C  I A L C  + ++C++   G  WP +Y         PTHC +C + CP
Sbjct:  195 VGLFLVMSPAELFDRAAA-----ATAEPQGPRRSQDLVVTLPDGSVVAPRLPEGALLVMNGEGVQRWMRPAAEGAAQPHTPMHEVLSSGMGGGVRAWFGRMFMPPPDSVLQISDPDLEAELLLDDSLASIAAGSDQQVQIRGGDSRDRFQAARRMTFAQYYAATHRAFQAGEAAAVPSVGCTP----------ARRRLVDENSCGADQVYCWMSCVNISA-LACDKSAVLCQDKYTGGLWPRDYMIDVNGTSKPTHCKNCSVTCP 443          
BLAST of jgi.p|Trimin1|135290 vs. uniprot
Match: A0A250X4L7_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X4L7_9CHLO)

HSP 1 Score: 126 bits (316), Expect = 9.750e-30
Identity = 90/243 (37.04%), Postives = 115/243 (47.33%), Query Frame = 1
Query:    4 GLFLVTMAASYIDLATGDT--------MQGAAAPPSGLILQLADGTFVEPLLPQGSLLVMDGEAATQWMKA-----GTVAPRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMSGPDSGARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTGPTHCFDCIIQC 693
            GLFL+  AA Y  L   D+        +   A P SGL+++L +G  V P+  +GSLLVM+GE A+ WM+A       + P APPHE+   +  GAARAWFGRMY P   A L   A                 S+G++F EYR QTY AF  G         C P S         RR L   G+C+A + YCWM C  I  DL C +  +VC +  +G  W           HC  C  QC
Sbjct:  183 GLFLIMTAAEYFHLQYRDSRDAIQSQRLLSEARPESGLLIELPNGQVVRPVFEEGSLLVMNGEGASMWMRAEGLHASPLPPFAPPHELLVPEAEGAARAWFGRMYLPPRDAVLQHGA-----------------SKGMTFNEYREQTYEAFRDGNP-------CCPES---------RRGLQSAGNCSAGQIYCWMSCTPI-GDLSCPN--IVCADN-EGVLWTNQSE------HCLTCKPQC 382          
BLAST of jgi.p|Trimin1|135290 vs. uniprot
Match: A0A835SXX8_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SXX8_CHLIN)

HSP 1 Score: 117 bits (292), Expect = 1.970e-26
Identity = 84/234 (35.90%), Postives = 109/234 (46.58%), Query Frame = 1
Query:   91 LILQLADGTFVEPLLPQGSLLVMDGEAATQWMKA---GTVAPRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARDAAGDI----VSEAYAPSAAVQASRGLSFGEYRSQTYAA--FHGGAGHVASTAGCAPIS----------------SMSGPDSG---ARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGT-FWPENYTTPT--GPTHCFDCIIQCPN 699
            L++QL DG  V P+LP G+LLVM+GE  T+WM+    G V P +P H V S  L G  RAWFGRM+ P   A L     GD+    ++ A        A  G+     R  T AA    G   H        PI+                    P  G   ARR LVD  SC A + +CWM C AIP +  C  +D++C N  + +  WP ++  P+   PTHC  C   CPN
Sbjct:  202 LVVQLPDGRIVTPVLPDGALLVMNGEGLTRWMRQPSPGRVQPYSPMHAVLSSDLSGGVRAWFGRMFMPPDHARLQVADVGDLGDHTITNASGDEKMQHARAGVVRRSLRISTPAATTLSGLQQHPL------PITFVEYRQRTYSLFHGGRGQEAPTVGCSPARRQLVDESSCGADQVFCWMSCMAIPPNSTCGKSDLICANTKNTSQLWPRDFLIPSTNNPTHCATCAPMCPN 429          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135290 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A835Z1Z9_9STRA1.160e-170100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CJ88_9STRA3.190e-11093.49Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CGD7_9STRA1.860e-6650.84Copper transport protein n=2 Tax=Tribonema minus T... [more]
A0A836CGZ6_9STRA7.690e-6050.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z2A5_9STRA9.350e-6051.06Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A2J8A9L1_9CHLO1.250e-4742.28Uncharacterized protein (Fragment) n=1 Tax=Tetraba... [more]
A0A150GDT7_GONPE1.300e-4441.03Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A835XRK0_9CHLO1.520e-3334.34Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A250X4L7_9CHLO9.750e-3037.04Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A835SXX8_CHLIN1.970e-2635.90Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_211contigContig_211:137054..137764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|135290|gw1.211.30.1
DescriptionCopper transporter
COG categoryS
Max annot lvl3041|Chlorophyta
EggNOG OGs2EK95@1|root,2S3NF@2759|Eukaryota,382DJ@33090|Viridiplantae,34P19@3041|Chlorophyta
Evalue4.07e-07
Seed ortholog242159.ABO95615
Hectar predicted targeting categorysignal peptide
TranscriptId135612
TrackFilteredModels1
ProteinId135290
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135290gene_16542Tribonema minus UTEX_B_3156 geneContig_211 137054..137764 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16542_1exon_16542_1Tribonema minus UTEX_B_3156 exonContig_211 137054..137764 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16542CDS_16542Tribonema minus UTEX_B_3156 CDSContig_211 137054..137764 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135290Trimin1|135290|gw1.211.30.1Tribonema minus UTEX_B_3156 polypeptideContig_211 137054..137764 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16542 ID=mRNA_16542|Name=jgi.p|Trimin1|135290|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=711bp|location=Sequence derived from alignment at Contig_211:137054..137764- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATTGGCCTGTTTCTGGTCACAATGGCCGCCTCCTACATCGACCTCGCCAC
GGGCGACACCATGCAAGGCGCTGCTGCCCCCCCGTCTGGCCTGATTCTGC
AGCTGGCGGACGGCACTTTCGTCGAACCGCTCCTGCCGCAGGGCAGTCTG
CTGGTCATGGATGGCGAGGCAGCGACGCAGTGGATGAAGGCCGGGACCGT
GGCGCCCCGCGCACCGCCGCATGAAGTGCAGTCACTTCAGCTAGGCGGCG
CAGCGCGCGCATGGTTTGGCCGCATGTACTTCCCCGATGCCGCCGCCACC
CTCGCACGCGACGCCGCCGGCGACATCGTCTCAGAGGCGTACGCGCCTTC
AGCAGCGGTGCAGGCTTCACGCGGCCTGTCCTTTGGGGAGTACCGCAGCC
AGACGTACGCAGCATTCCACGGCGGCGCCGGCCACGTTGCGAGCACTGCC
GGCTGCGCTCCCATCAGCAGCATGAGCGGTCCTGACAGCGGAGCGCGGAG
GCTGCTGGTGGACCCCGGGTCGTGCACGGCTGCGGAGAAGTACTGCTGGA
TGGGCTGCCGCGCCATACCGGCTGACCTCGTCTGCGCCTCAGCAGACATG
GTGTGCCGCAACCCCATCGATGGCACGTTCTGGCCGGAGAACTACACCAC
GCCCACAGGCCCCACGCACTGCTTCGACTGCATCATTCAGTGCCCCAACG
GCGACGGGACG
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protein sequence of jgi.p|Trimin1|135290

>Trimin1|135290|gw1.211.30.1 ID=Trimin1|135290|gw1.211.30.1|Name=jgi.p|Trimin1|135290|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=237bp
IGLFLVTMAASYIDLATGDTMQGAAAPPSGLILQLADGTFVEPLLPQGSL
LVMDGEAATQWMKAGTVAPRAPPHEVQSLQLGGAARAWFGRMYFPDAAAT
LARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTA
GCAPISSMSGPDSGARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADM
VCRNPIDGTFWPENYTTPTGPTHCFDCIIQCPNGDGT
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mRNA from alignment at Contig_211:137054..137764-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16542 ID=mRNA_16542|Name=jgi.p|Trimin1|135290|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=711bp|location=Sequence derived from alignment at Contig_211:137054..137764- (Tribonema minus UTEX_B_3156 )
ATTGGCCTGTTTCTGGTCACAATGGCCGCCTCCTACATCGACCTCGCCAC GGGCGACACCATGCAAGGCGCTGCTGCCCCCCCGTCTGGCCTGATTCTGC AGCTGGCGGACGGCACTTTCGTCGAACCGCTCCTGCCGCAGGGCAGTCTG CTGGTCATGGATGGCGAGGCAGCGACGCAGTGGATGAAGGCCGGGACCGT GGCGCCCCGCGCACCGCCGCATGAAGTGCAGTCACTTCAGCTAGGCGGCG CAGCGCGCGCATGGTTTGGCCGCATGTACTTCCCCGATGCCGCCGCCACC CTCGCACGCGACGCCGCCGGCGACATCGTCTCAGAGGCGTACGCGCCTTC AGCAGCGGTGCAGGCTTCACGCGGCCTGTCCTTTGGGGAGTACCGCAGCC AGACGTACGCAGCATTCCACGGCGGCGCCGGCCACGTTGCGAGCACTGCC GGCTGCGCTCCCATCAGCAGCATGAGCGGTCCTGACAGCGGAGCGCGGAG GCTGCTGGTGGACCCCGGGTCGTGCACGGCTGCGGAGAAGTACTGCTGGA TGGGCTGCCGCGCCATACCGGCTGACCTCGTCTGCGCCTCAGCAGACATG GTGTGCCGCAACCCCATCGATGGCACGTTCTGGCCGGAGAACTACACCAC GCCCACAGGCCCCACGCACTGCTTCGACTGCATCATTCAGTGCCCCAACG GCGACGGGACG
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Coding sequence (CDS) from alignment at Contig_211:137054..137764-

>mRNA_16542 ID=mRNA_16542|Name=jgi.p|Trimin1|135290|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=711bp|location=Sequence derived from alignment at Contig_211:137054..137764- (Tribonema minus UTEX_B_3156 )
ATTGGCCTGTTTCTGGTCACAATGGCCGCCTCCTACATCGACCTCGCCAC
GGGCGACACCATGCAAGGCGCTGCTGCCCCCCCGTCTGGCCTGATTCTGC
AGCTGGCGGACGGCACTTTCGTCGAACCGCTCCTGCCGCAGGGCAGTCTG
CTGGTCATGGATGGCGAGGCAGCGACGCAGTGGATGAAGGCCGGGACCGT
GGCGCCCCGCGCACCGCCGCATGAAGTGCAGTCACTTCAGCTAGGCGGCG
CAGCGCGCGCATGGTTTGGCCGCATGTACTTCCCCGATGCCGCCGCCACC
CTCGCACGCGACGCCGCCGGCGACATCGTCTCAGAGGCGTACGCGCCTTC
AGCAGCGGTGCAGGCTTCACGCGGCCTGTCCTTTGGGGAGTACCGCAGCC
AGACGTACGCAGCATTCCACGGCGGCGCCGGCCACGTTGCGAGCACTGCC
GGCTGCGCTCCCATCAGCAGCATGAGCGGTCCTGACAGCGGAGCGCGGAG
GCTGCTGGTGGACCCCGGGTCGTGCACGGCTGCGGAGAAGTACTGCTGGA
TGGGCTGCCGCGCCATACCGGCTGACCTCGTCTGCGCCTCAGCAGACATG
GTGTGCCGCAACCCCATCGATGGCACGTTCTGGCCGGAGAACTACACCAC
GCCCACAGGCCCCACGCACTGCTTCGACTGCATCATTCAGTGCCCCAACG
GCGACGGGACG
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