mRNA_16542 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|135290 vs. uniprot
Match: A0A835Z1Z9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z9_9STRA) HSP 1 Score: 478 bits (1230), Expect = 1.160e-170 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1 Query: 1 IGLFLVTMAASYIDLATGDTMQGAAAPPSGLILQLADGTFVEPLLPQGSLLVMDGEAATQWMKAGTVAPRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMSGPDSGARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTGPTHCFDCIIQCPNGDGT 711 IGLFLVTMAASYIDLATGDTMQGAAAPPSGLILQLADGTFVEPLLPQGSLLVMDGEAATQWMKAGTVAPRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMSGPDSGARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTGPTHCFDCIIQCPNGDGT Sbjct: 1 IGLFLVTMAASYIDLATGDTMQGAAAPPSGLILQLADGTFVEPLLPQGSLLVMDGEAATQWMKAGTVAPRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMSGPDSGARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTGPTHCFDCIIQCPNGDGT 237
BLAST of jgi.p|Trimin1|135290 vs. uniprot
Match: A0A836CJ88_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ88_9STRA) HSP 1 Score: 325 bits (832), Expect = 3.190e-110 Identity = 158/169 (93.49%), Postives = 160/169 (94.67%), Query Frame = 1 Query: 205 PRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMSGPDSGARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTGPTHCFDCIIQCPNGDGT 711 PRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLAR AA DIV+EAYA SAAVQASR LSFGEYRSQTYAAFHGGAGH AS GCAPISSMSG DSGA R+LVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTGPTHCFDCIIQCPNGDGT Sbjct: 1 PRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARAAADDIVAEAYAASAAVQASRSLSFGEYRSQTYAAFHGGAGHAASAVGCAPISSMSGSDSGASRVLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTGPTHCFDCIIQCPNGDGT 169
BLAST of jgi.p|Trimin1|135290 vs. uniprot
Match: A0A836CGD7_9STRA (Copper transport protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGD7_9STRA) HSP 1 Score: 222 bits (566), Expect = 1.860e-66 Identity = 121/238 (50.84%), Postives = 147/238 (61.76%), Query Frame = 1 Query: 4 GLFLVTMAASYIDLATGDTMQ--GAAAPPSGLILQLADGTFVEPLLPQGSLLVMDGEAATQWMKAGTVAPRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMS-----GPDSGARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTG-PTHCFDCIIQC 693 GLFLV AA Y +L +G ++ AP +GL+++L DG V P LPQGSLLVM+GEAAT+WM AG + P AP HEV+SL+L ARAWFGRMYFP AATL EA P L+FGEYR QTY AF G GH AS GC P+++ + + A+R+L D GSC E YCWM C IPA L C AD+VC NP DGT WPE+Y +G P HC+DC+ C Sbjct: 118 GLFLVMTAAEYFELESGARLELGHGTAPQTGLLVELPDGRRVRPQLPQGSLLVMNGEAATRWMDAGALRPHAPLHEVESLELTATARAWFGRMYFPPQAATLR--------GEALLP---------LTFGEYRQQTYEAFRSGQGHSASAVGCTPMTTSAMLQQQSHNISAQRVLADEGSCGVDEVYCWMSCMQIPAALTCPKADIVCINPTDGTLWPEDYVDSSGTPGHCYDCVPDC 338
BLAST of jgi.p|Trimin1|135290 vs. uniprot
Match: A0A836CGZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGZ6_9STRA) HSP 1 Score: 204 bits (518), Expect = 7.690e-60 Identity = 122/240 (50.83%), Postives = 147/240 (61.25%), Query Frame = 1 Query: 1 IGLFLVTMAASYIDLATGDTMQGA-AAPPSGLILQLADGTFVEPLLPQGSLLVMDGEAATQWMKAGTVAPRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMSGPDSGARRLLVDPGSCTAAEKY-CWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTG--PTHCFDCIIQCPNGDG 708 IGLFLV A YIDL TGD + G+ SGL+++ A G P LP+G+L++M GEAAT+WM+AG V P+AP HEV SL + GAARAWFGRMYFP A A L G+++ +A AV A GL+FG Y AF G GH AS AGC+P S GA R L D SC AA K+ CWM C+AIP CA + M CRNP +G FWP NY P HC+DCI+QCP G Sbjct: 210 IGLFLVMTVAEYIDLPTGDRLAGSYRLHGSGLVVEHAPGQRAAPALPEGALVIMHGEAATRWMEAGAVKPKAPLHEVVSLDISGAARAWFGRMYFPLADAKLHLQD-GELLDDAIHN--AVDAG-GLTFGAYHQHASEAFRRGLGHSASAAGCSP--SAVSRHLGAARELADAASCKAAGKFFCWMSCQAIPKKARCAWSKMRCRNPKNGKFWPANYIDKKTKKPGHCYDCIVQCPKPGG 443
BLAST of jgi.p|Trimin1|135290 vs. uniprot
Match: A0A835Z2A5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2A5_9STRA) HSP 1 Score: 197 bits (500), Expect = 9.350e-60 Identity = 120/235 (51.06%), Postives = 143/235 (60.85%), Query Frame = 1 Query: 1 IGLFLVTMAASYIDLATGDTMQGAAAPP-SGLILQLADGTFVEPLLPQGSLLVMDGEAATQWMKAGTVAPRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMSGPDSGARRLLVDPGSCTAAEKY-CWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTG--PTHCFDCIIQC 693 IGLFLV A YI L TGD + G P SGL+++LA G P LP+G+L++M GEAAT+WM+AG V P+AP HEV S+ + GAARAWFGRMYFP A A L R G+++ +A A A GL+FG Y AF G GH AS AGC+P S GA R L D SC AA K+ CWM C+AIP CA + M CRNP G FWP NY P HC DCI+QC Sbjct: 1 IGLFLVMTVAEYISLPTGDRLFGNDRPHGSGLVVELAPGYQTAPALPEGALVIMHGEAATRWMEAGAVKPKAPLHEVVSMDVSGAARAWFGRMYFPLADAKL-RLQDGELLDDAIHN--AFDAG-GLTFGAYHQHAAEAFRRGQGHSASAAGCSP--SAVSRHLGAARELADAASCKAAGKFFCWMSCQAIPKKPKCAWSKMRCRNPKTGKFWPANYIDKKTKKPGHCSDCIVQC 229
BLAST of jgi.p|Trimin1|135290 vs. uniprot
Match: A0A2J8A9L1_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A9L1_9CHLO) HSP 1 Score: 175 bits (443), Expect = 1.250e-47 Identity = 104/246 (42.28%), Postives = 130/246 (52.85%), Query Frame = 1 Query: 1 IGLFLVTMAASYID----LATGDTMQGAAAPPS---GLILQLADGTFVEPLLPQGSLLVMDGEAATQWMKAGTVAPR----APPHEVQSLQLGGAARAWFGRMYFPDAAATL-ARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMSGPDSGARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTP--TGPTHCFDCIIQCP 696 IGLFLV A D ATGD+ P L++QLADG V P+LP G+LLVM+GE +WM+ +V P +P HEV S L G RAWFGRM+ P AA L D + D + P +F EY+ TY FH G G AS AGC+P RR LVD GSC + YCWM C +I ++ C+ +++C N +G WPENYTTP P HCFDC + CP Sbjct: 203 IGLFLVMSPAELFDRAAAAATGDSKAAGEGKPQRAQDLVVQLADGRIVTPVLPDGALLVMNGEGLMRWMRMPSVEPLHLPYSPLHEVLSSDLSGGVRAWFGRMFMPPHAARLQVEDGSKDNAHASSRP----------TFAEYQQHTYTLFHDGLGQAASAAGCSPT----------RRQLVDEGSCGNDKVYCWMSCMSITPNITCSKDEIICANIKNGLLWPENYTTPGRAMPGHCFDCTLMCP 428
BLAST of jgi.p|Trimin1|135290 vs. uniprot
Match: A0A150GDT7_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GDT7_GONPE) HSP 1 Score: 168 bits (425), Expect = 1.300e-44 Identity = 96/234 (41.03%), Postives = 125/234 (53.42%), Query Frame = 1 Query: 91 LILQLADGTFVEPLLPQGSLLVMDGEAATQWMKA-------GTVAPRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLA-----------------------RDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMSGPDSGARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTP--TGPTHCFDCIIQCP 696 L++QLADG V P+LP G+LLVM+GE ++WM+ G P +P HEV S + G RAWFGRM+ P A+A L DAA ++A +AA ++ ++FGEYR TY FH G GH AS GC+P RRLL D GSC A E YCW C +PA+ C A+++C+N +G WP+NYTTP P HC DC + CP Sbjct: 279 LVVQLADGRIVAPVLPDGALLVMNGEGLSRWMRVPASSSALGGSQPYSPLHEVLSSDMAGGVRAWFGRMFMPPASAVLQVTDEPVAAVAVXXXXXXXXXXXXGDAARTPHISSFATAAATVTTK-MTFGEYRQHTYRMFHDGQGHAASAVGCSPT----------RRLLADEGSCGANEVYCWHSCMPMPANATCGKAEILCQNVNNGLLWPQNYTTPGVARPGHCKDCTLICP 501
BLAST of jgi.p|Trimin1|135290 vs. uniprot
Match: A0A835XRK0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XRK0_9CHLO) HSP 1 Score: 135 bits (341), Expect = 1.520e-33 Identity = 91/265 (34.34%), Postives = 123/265 (46.42%), Query Frame = 1 Query: 1 IGLFLVTMAASYIDLATGDTMQGAAAPPSG------LILQLADGTFVEPLLPQGSLLVMDGEAATQWMKA---GTVAPRAPPHEVQSLQLGGAARAWFGRMYFP--------------------DAAATLARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMSGPDSGARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTG----PTHCFDCIIQCP 696 +GLFLV A D A A A P G L++ L DG+ V P LP+G+LLVM+GE +WM+ G P P HEV S +GG RAWFGRM+ P D+ A++A + + QA+R ++F +Y + T+ AF G + GC P ARR LVD SC A + YCWM C I A L C + ++C++ G WP +Y PTHC +C + CP Sbjct: 195 VGLFLVMSPAELFDRAAA-----ATAEPQGPRRSQDLVVTLPDGSVVAPRLPEGALLVMNGEGVQRWMRPAAEGAAQPHTPMHEVLSSGMGGGVRAWFGRMFMPPPDSVLQISDPDLEAELLLDDSLASIAAGSDQQVQIRGGDSRDRFQAARRMTFAQYYAATHRAFQAGEAAAVPSVGCTP----------ARRRLVDENSCGADQVYCWMSCVNISA-LACDKSAVLCQDKYTGGLWPRDYMIDVNGTSKPTHCKNCSVTCP 443
BLAST of jgi.p|Trimin1|135290 vs. uniprot
Match: A0A250X4L7_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X4L7_9CHLO) HSP 1 Score: 126 bits (316), Expect = 9.750e-30 Identity = 90/243 (37.04%), Postives = 115/243 (47.33%), Query Frame = 1 Query: 4 GLFLVTMAASYIDLATGDT--------MQGAAAPPSGLILQLADGTFVEPLLPQGSLLVMDGEAATQWMKA-----GTVAPRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMSGPDSGARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTGPTHCFDCIIQC 693 GLFL+ AA Y L D+ + A P SGL+++L +G V P+ +GSLLVM+GE A+ WM+A + P APPHE+ + GAARAWFGRMY P A L A S+G++F EYR QTY AF G C P S RR L G+C+A + YCWM C I DL C + +VC + +G W HC C QC Sbjct: 183 GLFLIMTAAEYFHLQYRDSRDAIQSQRLLSEARPESGLLIELPNGQVVRPVFEEGSLLVMNGEGASMWMRAEGLHASPLPPFAPPHELLVPEAEGAARAWFGRMYLPPRDAVLQHGA-----------------SKGMTFNEYREQTYEAFRDGNP-------CCPES---------RRGLQSAGNCSAGQIYCWMSCTPI-GDLSCPN--IVCADN-EGVLWTNQSE------HCLTCKPQC 382
BLAST of jgi.p|Trimin1|135290 vs. uniprot
Match: A0A835SXX8_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SXX8_CHLIN) HSP 1 Score: 117 bits (292), Expect = 1.970e-26 Identity = 84/234 (35.90%), Postives = 109/234 (46.58%), Query Frame = 1 Query: 91 LILQLADGTFVEPLLPQGSLLVMDGEAATQWMKA---GTVAPRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARDAAGDI----VSEAYAPSAAVQASRGLSFGEYRSQTYAA--FHGGAGHVASTAGCAPIS----------------SMSGPDSG---ARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGT-FWPENYTTPT--GPTHCFDCIIQCPN 699 L++QL DG V P+LP G+LLVM+GE T+WM+ G V P +P H V S L G RAWFGRM+ P A L GD+ ++ A A G+ R T AA G H PI+ P G ARR LVD SC A + +CWM C AIP + C +D++C N + + WP ++ P+ PTHC C CPN Sbjct: 202 LVVQLPDGRIVTPVLPDGALLVMNGEGLTRWMRQPSPGRVQPYSPMHAVLSSDLSGGVRAWFGRMFMPPDHARLQVADVGDLGDHTITNASGDEKMQHARAGVVRRSLRISTPAATTLSGLQQHPL------PITFVEYRQRTYSLFHGGRGQEAPTVGCSPARRQLVDESSCGADQVFCWMSCMAIPPNSTCGKSDLICANTKNTSQLWPRDFLIPSTNNPTHCATCAPMCPN 429 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135290 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16542 ID=mRNA_16542|Name=jgi.p|Trimin1|135290|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=711bp|location=Sequence derived from alignment at Contig_211:137054..137764- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATTGGCCTGTTTCTGGTCACAATGGCCGCCTCCTACATCGACCTCGCCACback to top protein sequence of jgi.p|Trimin1|135290 >Trimin1|135290|gw1.211.30.1 ID=Trimin1|135290|gw1.211.30.1|Name=jgi.p|Trimin1|135290|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=237bp IGLFLVTMAASYIDLATGDTMQGAAAPPSGLILQLADGTFVEPLLPQGSLback to top mRNA from alignment at Contig_211:137054..137764- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16542 ID=mRNA_16542|Name=jgi.p|Trimin1|135290|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=711bp|location=Sequence derived from alignment at Contig_211:137054..137764- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_211:137054..137764- >mRNA_16542 ID=mRNA_16542|Name=jgi.p|Trimin1|135290|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=711bp|location=Sequence derived from alignment at Contig_211:137054..137764- (Tribonema minus UTEX_B_3156 )back to top |