mRNA_16528 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|180199 vs. uniprot
Match: A0A835Z296_9STRA (NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z296_9STRA) HSP 1 Score: 280 bits (717), Expect = 1.350e-95 Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1 Query: 1 MFRVSRAAASLCRATPVAREAWKKTSTGLVGLPVDPNARVNLAQKQNDILEKIKIIPEHTGYRKAVEAISKYRLKVLDSSLTDEQVEDEINCGQLEELIVQADDELGLIQFYYDERIWERREALDKIDQEMKGPRPNPWEW 423 MFRVSRAAASLCRATPVAREAWKKTSTGLVGLPVDPNARVNLAQKQNDILEKIKIIPEHTGYRKAVEAISKYRLKVLDSSLTDEQVEDEINCGQLEELIVQADDELGLIQFYYDERIWERREALDKIDQEMKGPRPNPWEW Sbjct: 1 MFRVSRAAASLCRATPVAREAWKKTSTGLVGLPVDPNARVNLAQKQNDILEKIKIIPEHTGYRKAVEAISKYRLKVLDSSLTDEQVEDEINCGQLEELIVQADDELGLIQFYYDERIWERREALDKIDQEMKGPRPNPWEW 141
BLAST of jgi.p|Trimin1|180199 vs. uniprot
Match: D7FTF5_ECTSI (NADH dehydrogenase (Ubiquinone) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTF5_ECTSI) HSP 1 Score: 120 bits (302), Expect = 1.250e-32 Identity = 68/120 (56.67%), Postives = 80/120 (66.67%), Query Frame = 1 Query: 37 RATPVAREAWKKTSTGLVGLPVDPNARVNLAQKQNDILEKIKIIPEHTGYRKAVEAISKYRLKVLDSSLTDEQVEDEINCGQLEELIVQADDELGLIQFYYDERIWERREALDKIDQEMK 396 RAT R KKTSTGLVGL VD NAR N Q ILEKIK+IP+H YRK VEAIS YRLKV + +E +EDEIN GQLEEL+V +EL LI Y + R+WE + L+K D E + Sbjct: 4 RATQAVRMVVKKTSTGLVGLAVDVNARANFIALQKQILEKIKVIPDHAQYRKDVEAISGYRLKVATETEDEETIEDEINHGQLEELLVDGKNELKLIDKYAEWRLWEAVDELNKADPERQ 123
BLAST of jgi.p|Trimin1|180199 vs. uniprot
Match: A0A835Z8F4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8F4_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.210e-28 Identity = 70/146 (47.95%), Postives = 97/146 (66.44%), Query Frame = 1 Query: 1 MFRVSRAAASLCRATPVARE---AWKKTSTGLVGLPVDP-NARVNLAQKQNDILEKIKIIPEHTGYRKAVEAISKYRLKVLDS-SLTDEQVEDEINCGQLEELIVQADDELGLIQFYYDERIWERREALDKIDQEMKGPRPNPWEW 423 MFR + AAA RAT VAR +W +T +G L D +AR L + Q +L++++ IP YRK VEA+++++LK+L++ L+DEQVE EI+ GQLE+LI Q DELG IQFY DER +E+R ++ +KGPR NPWEW Sbjct: 1 MFRATAAAA--LRATHVARATTGSWNQTFSG--SLTGDKGSARKQLTELQRQLLQRVERIPAQAAYRKEVEAVAQHKLKILENPDLSDEQVEQEISGGQLEDLIGQGRDELGFIQFYEDERKFEQR-PYSTYEETLKGPRQNPWEW 141
BLAST of jgi.p|Trimin1|180199 vs. uniprot
Match: A0A7S1BDH5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BDH5_9STRA) HSP 1 Score: 107 bits (267), Expect = 5.800e-27 Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 1 Query: 67 KKTSTGLVGLPVDPNARVNLAQKQNDILEKIKIIPEHTGYRKAVEAISKYRLKVLDSSLTD-EQVEDEINCGQLEELIVQADDELGLIQFYYDERIWERREALDKIDQEMKG 399 +KTSTGLVGLPVDPN NL + ILEKI+ +PE YR VE +S+YRL V++ D +++E+EI+CGQ+EE+I QA DEL LI Y ER+WE +++ D+E K Sbjct: 39 EKTSTGLVGLPVDPNGVSNLEEANRAILEKIRAVPETAQYRTNVEQVSRYRLSVIEEHRDDAKKIEEEIDCGQIEEMIEQAKDELSLIDVYVKERVWE---LIEERDREAKA 147
BLAST of jgi.p|Trimin1|180199 vs. uniprot
Match: K3WST9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WST9_GLOUD) HSP 1 Score: 104 bits (260), Expect = 2.030e-26 Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 1 Query: 40 ATPVAREAWKKTSTGLVGLPVDPNARVNLAQKQNDILEKIKIIPEHTGYRKAVEAISKYRLKVLDSSLTDEQVEDEINCGQLEELIVQADDELGLIQFYYDERIWE 357 AT V R A KKT+TG+VGLPV+PNAR +L + L++IK++PE+T YR +VE I+ YRLKV + + +E EIN GQLEELI QA+DEL +I Y + ++WE Sbjct: 3 ATRVLRMAAKKTTTGIVGLPVNPNARQDLIKIYQKTLQEIKVLPENTVYRDSVERITNYRLKVTLENEDEHVIEKEINMGQLEELIEQAEDELSVIPVYLENKLWE 108
BLAST of jgi.p|Trimin1|180199 vs. uniprot
Match: A0A8K1FMG6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMG6_PYTOL) HSP 1 Score: 104 bits (260), Expect = 2.090e-26 Identity = 54/106 (50.94%), Postives = 76/106 (71.70%), Query Frame = 1 Query: 40 ATPVAREAWKKTSTGLVGLPVDPNARVNLAQKQNDILEKIKIIPEHTGYRKAVEAISKYRLKVLDSSLTDEQVEDEINCGQLEELIVQADDELGLIQFYYDERIWE 357 AT V R A +KTSTG+VGLPV+PNAR +L L++++++P+ YR AVE I+ YRLKV+ + ++ +E EINCGQLEELI QA+DEL +I Y + ++WE Sbjct: 3 ATRVLRMAVRKTSTGIVGLPVNPNARNDLIAIYQKTLKEVQVLPDGIAYRSAVEKITNYRLKVVLDNEDEDVIEKEINCGQLEELIEQAEDELSVIPVYLENKLWE 108
BLAST of jgi.p|Trimin1|180199 vs. uniprot
Match: F0WM77_9STRA (Uncharacterized protein AlNc14C153G7580 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WM77_9STRA) HSP 1 Score: 104 bits (260), Expect = 2.280e-26 Identity = 55/101 (54.46%), Postives = 74/101 (73.27%), Query Frame = 1 Query: 61 AWKKTSTGLVGLPVDPNARVNLAQKQNDILEKIK--IIPEHTGYRKAVEAISKYRLKVLDSSLTDEQVEDEINCGQLEELIVQADDELGLIQFYYDERIWE 357 A +KTSTGLVGL V+PNAR +L Q LE++K ++PE YR AVE I+K+RLKV++ + +E +E EINCGQLEELI QA+DEL +I Y + ++WE Sbjct: 10 AVRKTSTGLVGLAVNPNARKDLMQLYRKTLEEVKNQVLPEDAAYRDAVERITKFRLKVVEENEDEEVIEKEINCGQLEELIEQAEDELSVIPVYLEHKLWE 110
BLAST of jgi.p|Trimin1|180199 vs. uniprot
Match: A0A7S2SRG1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRG1_9STRA) HSP 1 Score: 103 bits (256), Expect = 2.070e-25 Identity = 65/133 (48.87%), Postives = 81/133 (60.90%), Query Frame = 1 Query: 13 SRAAASLCRATPVAREAWKKTSTGLVGLPVDPNARVNLAQKQNDILEKI-KIIPEHTGYRKAVEAISKYRLKVLDSSLTDEQVEDEINCGQLEELIVQADDELGLIQFYYDERIWER-------REALDKIDQ 387 +RAA R T R A KTSTGLVGLPVD NARVNL Q+ +L +++PE T YR +V A S YRLKV ++++E I GQLEELI QA DE+ LI++Y + R WER R+ LD I Q Sbjct: 1 ARAAPMALRLTRALRLAVSKTSTGLVGLPVDVNARVNLISMQSQVLAAAERLLPEGTAYRDSVVATSSYRLKVATEHQEEDEIERIIGFGQLEELIWQAKDEIELIEYYAENRAWERVADAEFERDVLDDIAQ 133
BLAST of jgi.p|Trimin1|180199 vs. uniprot
Match: A0A024GNY3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GNY3_9STRA) HSP 1 Score: 102 bits (253), Expect = 2.610e-25 Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 1 Query: 61 AWKKTSTGLVGLPVDPNARVNLAQKQNDILEKIKI--IPEHTGYRKAVEAISKYRLKVLDSSLTDEQVEDEINCGQLEELIVQADDELGLIQFYYDERIWE 357 A +KTSTGLVGL V+PNAR +L LE++KI +PE YR AVE I+K+RLK+++ + ++ +E EINCGQLEELI QA+DEL +I Y + ++WE Sbjct: 10 AVRKTSTGLVGLAVNPNARQDLVHLYQRTLEEVKIQVLPEDAAYRDAVERITKFRLKIVEDNENEDVIEKEINCGQLEELIEQAEDELSVIPVYLEHKLWE 110
BLAST of jgi.p|Trimin1|180199 vs. uniprot
Match: A0A2D4BMW9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMW9_PYTIN) HSP 1 Score: 101 bits (251), Expect = 4.820e-25 Identity = 54/106 (50.94%), Postives = 73/106 (68.87%), Query Frame = 1 Query: 40 ATPVAREAWKKTSTGLVGLPVDPNARVNLAQKQNDILEKIKIIPEHTGYRKAVEAISKYRLKVLDSSLTDEQVEDEINCGQLEELIVQADDELGLIQFYYDERIWE 357 AT V R A +KT+TG+VGLPV+ NAR +L N L+ + +PE YRKAVE I+ YRLKV+ + ++ +E INCGQLEELI QA+DEL +I Y + ++WE Sbjct: 3 ATRVLRMAVRKTTTGIVGLPVNVNARQDLIALYNKTLQAAQTLPEGIAYRKAVEQITNYRLKVVMENEDEDTIEKVINCGQLEELIEQAEDELSVIPMYLEHKLWE 108 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180199 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16528 ID=mRNA_16528|Name=jgi.p|Trimin1|180199|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=426bp|location=Sequence derived from alignment at Contig_211:83823..85296- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTTCAGAGTCTCACGTGCTGCTGCGTCGCTGTGCCGAGCCACCCCCGTback to top protein sequence of jgi.p|Trimin1|180199 >Trimin1|180199|e_gw1.211.46.1 ID=Trimin1|180199|e_gw1.211.46.1|Name=jgi.p|Trimin1|180199|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=142bp MFRVSRAAASLCRATPVAREAWKKTSTGLVGLPVDPNARVNLAQKQNDILback to top mRNA from alignment at Contig_211:83823..85296- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16528 ID=mRNA_16528|Name=jgi.p|Trimin1|180199|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1474bp|location=Sequence derived from alignment at Contig_211:83823..85296- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_211:83823..85296- >mRNA_16528 ID=mRNA_16528|Name=jgi.p|Trimin1|180199|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=426bp|location=Sequence derived from alignment at Contig_211:83823..85296- (Tribonema minus UTEX_B_3156 )back to top |