mRNA_16528 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|180199
Unique NamemRNA_16528
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|180199 vs. uniprot
Match: A0A835Z296_9STRA (NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z296_9STRA)

HSP 1 Score: 280 bits (717), Expect = 1.350e-95
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1
Query:    1 MFRVSRAAASLCRATPVAREAWKKTSTGLVGLPVDPNARVNLAQKQNDILEKIKIIPEHTGYRKAVEAISKYRLKVLDSSLTDEQVEDEINCGQLEELIVQADDELGLIQFYYDERIWERREALDKIDQEMKGPRPNPWEW 423
            MFRVSRAAASLCRATPVAREAWKKTSTGLVGLPVDPNARVNLAQKQNDILEKIKIIPEHTGYRKAVEAISKYRLKVLDSSLTDEQVEDEINCGQLEELIVQADDELGLIQFYYDERIWERREALDKIDQEMKGPRPNPWEW
Sbjct:    1 MFRVSRAAASLCRATPVAREAWKKTSTGLVGLPVDPNARVNLAQKQNDILEKIKIIPEHTGYRKAVEAISKYRLKVLDSSLTDEQVEDEINCGQLEELIVQADDELGLIQFYYDERIWERREALDKIDQEMKGPRPNPWEW 141          
BLAST of jgi.p|Trimin1|180199 vs. uniprot
Match: D7FTF5_ECTSI (NADH dehydrogenase (Ubiquinone) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTF5_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.250e-32
Identity = 68/120 (56.67%), Postives = 80/120 (66.67%), Query Frame = 1
Query:   37 RATPVAREAWKKTSTGLVGLPVDPNARVNLAQKQNDILEKIKIIPEHTGYRKAVEAISKYRLKVLDSSLTDEQVEDEINCGQLEELIVQADDELGLIQFYYDERIWERREALDKIDQEMK 396
            RAT   R   KKTSTGLVGL VD NAR N    Q  ILEKIK+IP+H  YRK VEAIS YRLKV   +  +E +EDEIN GQLEEL+V   +EL LI  Y + R+WE  + L+K D E +
Sbjct:    4 RATQAVRMVVKKTSTGLVGLAVDVNARANFIALQKQILEKIKVIPDHAQYRKDVEAISGYRLKVATETEDEETIEDEINHGQLEELLVDGKNELKLIDKYAEWRLWEAVDELNKADPERQ 123          
BLAST of jgi.p|Trimin1|180199 vs. uniprot
Match: A0A835Z8F4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8F4_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.210e-28
Identity = 70/146 (47.95%), Postives = 97/146 (66.44%), Query Frame = 1
Query:    1 MFRVSRAAASLCRATPVARE---AWKKTSTGLVGLPVDP-NARVNLAQKQNDILEKIKIIPEHTGYRKAVEAISKYRLKVLDS-SLTDEQVEDEINCGQLEELIVQADDELGLIQFYYDERIWERREALDKIDQEMKGPRPNPWEW 423
            MFR + AAA   RAT VAR    +W +T +G   L  D  +AR  L + Q  +L++++ IP    YRK VEA+++++LK+L++  L+DEQVE EI+ GQLE+LI Q  DELG IQFY DER +E+R      ++ +KGPR NPWEW
Sbjct:    1 MFRATAAAA--LRATHVARATTGSWNQTFSG--SLTGDKGSARKQLTELQRQLLQRVERIPAQAAYRKEVEAVAQHKLKILENPDLSDEQVEQEISGGQLEDLIGQGRDELGFIQFYEDERKFEQR-PYSTYEETLKGPRQNPWEW 141          
BLAST of jgi.p|Trimin1|180199 vs. uniprot
Match: A0A7S1BDH5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BDH5_9STRA)

HSP 1 Score: 107 bits (267), Expect = 5.800e-27
Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 1
Query:   67 KKTSTGLVGLPVDPNARVNLAQKQNDILEKIKIIPEHTGYRKAVEAISKYRLKVLDSSLTD-EQVEDEINCGQLEELIVQADDELGLIQFYYDERIWERREALDKIDQEMKG 399
            +KTSTGLVGLPVDPN   NL +    ILEKI+ +PE   YR  VE +S+YRL V++    D +++E+EI+CGQ+EE+I QA DEL LI  Y  ER+WE    +++ D+E K 
Sbjct:   39 EKTSTGLVGLPVDPNGVSNLEEANRAILEKIRAVPETAQYRTNVEQVSRYRLSVIEEHRDDAKKIEEEIDCGQIEEMIEQAKDELSLIDVYVKERVWE---LIEERDREAKA 147          
BLAST of jgi.p|Trimin1|180199 vs. uniprot
Match: K3WST9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WST9_GLOUD)

HSP 1 Score: 104 bits (260), Expect = 2.030e-26
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 1
Query:   40 ATPVAREAWKKTSTGLVGLPVDPNARVNLAQKQNDILEKIKIIPEHTGYRKAVEAISKYRLKVLDSSLTDEQVEDEINCGQLEELIVQADDELGLIQFYYDERIWE 357
            AT V R A KKT+TG+VGLPV+PNAR +L +     L++IK++PE+T YR +VE I+ YRLKV   +  +  +E EIN GQLEELI QA+DEL +I  Y + ++WE
Sbjct:    3 ATRVLRMAAKKTTTGIVGLPVNPNARQDLIKIYQKTLQEIKVLPENTVYRDSVERITNYRLKVTLENEDEHVIEKEINMGQLEELIEQAEDELSVIPVYLENKLWE 108          
BLAST of jgi.p|Trimin1|180199 vs. uniprot
Match: A0A8K1FMG6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMG6_PYTOL)

HSP 1 Score: 104 bits (260), Expect = 2.090e-26
Identity = 54/106 (50.94%), Postives = 76/106 (71.70%), Query Frame = 1
Query:   40 ATPVAREAWKKTSTGLVGLPVDPNARVNLAQKQNDILEKIKIIPEHTGYRKAVEAISKYRLKVLDSSLTDEQVEDEINCGQLEELIVQADDELGLIQFYYDERIWE 357
            AT V R A +KTSTG+VGLPV+PNAR +L       L++++++P+   YR AVE I+ YRLKV+  +  ++ +E EINCGQLEELI QA+DEL +I  Y + ++WE
Sbjct:    3 ATRVLRMAVRKTSTGIVGLPVNPNARNDLIAIYQKTLKEVQVLPDGIAYRSAVEKITNYRLKVVLDNEDEDVIEKEINCGQLEELIEQAEDELSVIPVYLENKLWE 108          
BLAST of jgi.p|Trimin1|180199 vs. uniprot
Match: F0WM77_9STRA (Uncharacterized protein AlNc14C153G7580 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WM77_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.280e-26
Identity = 55/101 (54.46%), Postives = 74/101 (73.27%), Query Frame = 1
Query:   61 AWKKTSTGLVGLPVDPNARVNLAQKQNDILEKIK--IIPEHTGYRKAVEAISKYRLKVLDSSLTDEQVEDEINCGQLEELIVQADDELGLIQFYYDERIWE 357
            A +KTSTGLVGL V+PNAR +L Q     LE++K  ++PE   YR AVE I+K+RLKV++ +  +E +E EINCGQLEELI QA+DEL +I  Y + ++WE
Sbjct:   10 AVRKTSTGLVGLAVNPNARKDLMQLYRKTLEEVKNQVLPEDAAYRDAVERITKFRLKVVEENEDEEVIEKEINCGQLEELIEQAEDELSVIPVYLEHKLWE 110          
BLAST of jgi.p|Trimin1|180199 vs. uniprot
Match: A0A7S2SRG1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRG1_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.070e-25
Identity = 65/133 (48.87%), Postives = 81/133 (60.90%), Query Frame = 1
Query:   13 SRAAASLCRATPVAREAWKKTSTGLVGLPVDPNARVNLAQKQNDILEKI-KIIPEHTGYRKAVEAISKYRLKVLDSSLTDEQVEDEINCGQLEELIVQADDELGLIQFYYDERIWER-------REALDKIDQ 387
            +RAA    R T   R A  KTSTGLVGLPVD NARVNL   Q+ +L    +++PE T YR +V A S YRLKV      ++++E  I  GQLEELI QA DE+ LI++Y + R WER       R+ LD I Q
Sbjct:    1 ARAAPMALRLTRALRLAVSKTSTGLVGLPVDVNARVNLISMQSQVLAAAERLLPEGTAYRDSVVATSSYRLKVATEHQEEDEIERIIGFGQLEELIWQAKDEIELIEYYAENRAWERVADAEFERDVLDDIAQ 133          
BLAST of jgi.p|Trimin1|180199 vs. uniprot
Match: A0A024GNY3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GNY3_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.610e-25
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 1
Query:   61 AWKKTSTGLVGLPVDPNARVNLAQKQNDILEKIKI--IPEHTGYRKAVEAISKYRLKVLDSSLTDEQVEDEINCGQLEELIVQADDELGLIQFYYDERIWE 357
            A +KTSTGLVGL V+PNAR +L       LE++KI  +PE   YR AVE I+K+RLK+++ +  ++ +E EINCGQLEELI QA+DEL +I  Y + ++WE
Sbjct:   10 AVRKTSTGLVGLAVNPNARQDLVHLYQRTLEEVKIQVLPEDAAYRDAVERITKFRLKIVEDNENEDVIEKEINCGQLEELIEQAEDELSVIPVYLEHKLWE 110          
BLAST of jgi.p|Trimin1|180199 vs. uniprot
Match: A0A2D4BMW9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMW9_PYTIN)

HSP 1 Score: 101 bits (251), Expect = 4.820e-25
Identity = 54/106 (50.94%), Postives = 73/106 (68.87%), Query Frame = 1
Query:   40 ATPVAREAWKKTSTGLVGLPVDPNARVNLAQKQNDILEKIKIIPEHTGYRKAVEAISKYRLKVLDSSLTDEQVEDEINCGQLEELIVQADDELGLIQFYYDERIWE 357
            AT V R A +KT+TG+VGLPV+ NAR +L    N  L+  + +PE   YRKAVE I+ YRLKV+  +  ++ +E  INCGQLEELI QA+DEL +I  Y + ++WE
Sbjct:    3 ATRVLRMAVRKTTTGIVGLPVNVNARQDLIALYNKTLQAAQTLPEGIAYRKAVEQITNYRLKVVMENEDEDTIEKVINCGQLEELIEQAEDELSVIPMYLEHKLWE 108          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180199 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z296_9STRA1.350e-95100.00NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=3... [more]
D7FTF5_ECTSI1.250e-3256.67NADH dehydrogenase (Ubiquinone) n=2 Tax=Ectocarpus... [more]
A0A835Z8F4_9STRA1.210e-2847.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1BDH5_9STRA5.800e-2750.89Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
K3WST9_GLOUD2.030e-2652.83Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1FMG6_PYTOL2.090e-2650.94Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0WM77_9STRA2.280e-2654.46Uncharacterized protein AlNc14C153G7580 n=1 Tax=Al... [more]
A0A7S2SRG1_9STRA2.070e-2548.87Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A024GNY3_9STRA2.610e-2552.48Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A2D4BMW9_PYTIN4.820e-2550.94Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_211contigContig_211:83823..85296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|180199|e_gw1.211.46.1
DescriptionNADH dehydrogenase. Source PGD
COG categoryC
Max annot lvl121069|Pythiales
EggNOG OGsKOG3365@1|root,KOG3365@2759|Eukaryota,1MHEE@121069|Pythiales
Evalue3.34e-27
Seed ortholog65071.PYU1_T008033
Hectar predicted targeting categorymitochondrion
TranscriptId180521
TrackFilteredModels1
ProteinId180199
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180199gene_16528Tribonema minus UTEX_B_3156 geneContig_211 83823..85296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180199Trimin1|180199|e_gw1.211.46.1Tribonema minus UTEX_B_3156 polypeptideContig_211 83823..85296 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16528_2exon_16528_2Tribonema minus UTEX_B_3156 exonContig_211 83823..84017 -
exon_16528_1exon_16528_1Tribonema minus UTEX_B_3156 exonContig_211 85066..85296 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16528CDS_16528Tribonema minus UTEX_B_3156 CDSContig_211 85066..85296 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16528 ID=mRNA_16528|Name=jgi.p|Trimin1|180199|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=426bp|location=Sequence derived from alignment at Contig_211:83823..85296- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAGAGTCTCACGTGCTGCTGCGTCGCTGTGCCGAGCCACCCCCGT
GGCGAGGGAGGCCTGGAAGAAGACGTCAACCGGCCTTGTGGGTCTTCCAG
TGGACCCTAATGCACGAGTCAATCTTGCTCAGAAGCAGAACGACATATTG
GAGAAGATCAAGATCATACCTGAGCACACGGGCTACAGGAAAGCGGTGGA
AGCCATATCCAAGTACAGACTCAAGGTACTTGATTCTAGCCTGACGGATG
AGCAAGTGGAGGATGAGATCAACTGTGGACAGCTGGAGGAGCTCATAGTT
CAGGCCGATGACGAGCTGGGCCTCATACAATTTTATTACGATGAACGCAT
CTGGGAGAGGAGGGAGGCACTGGACAAGATCGACCAGGAAATGAAGGGGC
CGCGCCCAAACCCCTGGGAGTGGTGA
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protein sequence of jgi.p|Trimin1|180199

>Trimin1|180199|e_gw1.211.46.1 ID=Trimin1|180199|e_gw1.211.46.1|Name=jgi.p|Trimin1|180199|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=142bp
MFRVSRAAASLCRATPVAREAWKKTSTGLVGLPVDPNARVNLAQKQNDIL
EKIKIIPEHTGYRKAVEAISKYRLKVLDSSLTDEQVEDEINCGQLEELIV
QADDELGLIQFYYDERIWERREALDKIDQEMKGPRPNPWEW*
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mRNA from alignment at Contig_211:83823..85296-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16528 ID=mRNA_16528|Name=jgi.p|Trimin1|180199|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1474bp|location=Sequence derived from alignment at Contig_211:83823..85296- (Tribonema minus UTEX_B_3156 )
ATGTTCAGAGTCTCACGTGCTGCTGCGTCGCTGTGCCGAGCCACCCCCGT GGCGAGGGAGGCCTGGAAGAAGACGTCAACCGGCCTTGTGGGTCTTCCAG TGGACCCTAATGCACGAGTCAATCTTGCTCAGAAGCAGAACGACATATTG GAGAAGATCAAGATCATACCTGAGCACACGGGCTACAGGAAAGCGGTGGA AGCCATATCCAAGTACAGACTCAAGGTACTTGTTCAATCTGCTATAGGTG TTGCCACACCTTTGCAGTCGTGATGTTCTCTTCAGAGTTGCTATCACTTG CTGAGAGGGCAGCCATTTTACTCAAGAAAAGTTCAACAGTAGTGACTTAC TTCTGGCAATGTGCTTCTTTACCTGTTATTACCCTCTTGCATTAATGCTA CTTTGAAATGACTGTTGCATGATCAATCGCAAGGAGTGTAGCCTGCTGTA TTGAATCAGAGGCATACACCGATGATGAAATTCAAAATCGTAGCTACATG TGCTTGAATGCTGCAAGCATGACAAGCGGCATCGCCAGTGTCATTTAAAT GGTATTTTGCACACCTCAGACGACGGAGCAACCTAAACGAGGGAGTCGTG ACGGTCCAATGCGACATCCATGACGGAAACTCTGTCGTGACACTGTCGCA TAGGAGTGCCGCACTTCCTGTCGTCTGCACGACACGTCGCACAAGGATGC TGCACTTTCCGTCGTCTGCACGACGTCTATTGCGCATAGTTGCCACCAGC ACCGTTCCGTTCTGTGGTGCAGTCGTGAAACCGTCGAGCTGCATCATACA GTACACAGTATTCGTCTCATGCACCCACCTGCAGTCGTGAAACCATTGTG CACCCACTTGCTCGCAAACAGCACCATGTTATGCCGTGCTGATATCATTT CGATTACTATTGCGAGCGTGCCGTTGTCAGAGCTGTCGTACACGGCCACA CCAGTCTGTCGTCTCTATGACTCCGTCATCACACCTCGGTCAGATTGGCC ATCATGCTGCTTGACTCTGTCGCGACGGACCGTCGTTCAAGGTGTGGTAT TGTGCGCTATGACCTGTTGACCGCTTATCATCCTGACACAACTGCACTTG ACAAAAACAGATTCGTTGCCCCATTCATGCTCCACATGTTCGTATATCGA CATCAATTGCAGCTACTATGTTATTTGAGCACTTGCGATTGTGTTTGCAG AAGCAGGCAACATCACATTGCCTCACATCACCACTGCTTACGTGCGTTTC TTGTACTTTCTCAAATCCAGGTGACGCAGGATTCTAGCCTGACGGATGAG CAAGTGGAGGATGAGATCAACTGTGGACAGCTGGAGGAGCTCATAGTTCA GGCCGATGACGAGCTGGGCCTCATACAATTTTATTACGATGAACGCATCT GGGAGAGGAGGGAGGCACTGGACAAGATCGACCAGGAAATGAAGGGGCCG CGCCCAAACCCCTGGGAGTGGTGA
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Coding sequence (CDS) from alignment at Contig_211:83823..85296-

>mRNA_16528 ID=mRNA_16528|Name=jgi.p|Trimin1|180199|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=426bp|location=Sequence derived from alignment at Contig_211:83823..85296- (Tribonema minus UTEX_B_3156 )
ATGTTCAGAGTCTCACGTGCTGCTGCGTCGCTGTGCCGAGCCACCCCCGT
GGCGAGGGAGGCCTGGAAGAAGACGTCAACCGGCCTTGTGGGTCTTCCAG
TGGACCCTAATGCACGAGTCAATCTTGCTCAGAAGCAGAACGACATATTG
GAGAAGATCAAGATCATACCTGAGCACACGGGCTACAGGAAAGCGGTGGA
AGCCATATCCAAGTACAGACTCAAGGTACTTGATTCTAGCCTGACGGATG
AGCAAGTGGAGGATGAGATCAACTGTGGACAGCTGGAGGAGCTCATAGTT
CAGGCCGATGACGAGCTGGGCCTCATACAATTTTATTACGATGAACGCAT
CTGGGAGAGGAGGGAGGCACTGGACAAGATCGACCAGGAAATGAAGGGGC
CGCGCCCAAACCCCTGGGAGTGGTGA
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