mRNA_16523 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|134368
Unique NamemRNA_16523
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|134368 vs. uniprot
Match: A0A836CJ88_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ88_9STRA)

HSP 1 Score: 360 bits (925), Expect = 1.320e-124
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1 
Query:    1 PRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARAAADDIVAEAYAASAAVQASRSLSFGEYRSQTYAAFHGGAGHAASAVGCAPISSMSGSDSGASRVLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTGPTHCFDCIIQCPNGDGTYGTGATPTP 534
            PRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARAAADDIVAEAYAASAAVQASRSLSFGEYRSQTYAAFHGGAGHAASAVGCAPISSMSGSDSGASRVLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTGPTHCFDCIIQCPNGDGTYGTGATPTP
Sbjct:    1 PRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARAAADDIVAEAYAASAAVQASRSLSFGEYRSQTYAAFHGGAGHAASAVGCAPISSMSGSDSGASRVLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTGPTHCFDCIIQCPNGDGTYGTGATPTP 178
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BLAST of jgi.p|Trimin1|134368 vs. uniprot
Match: A0A835Z1Z9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z9_9STRA)

HSP 1 Score: 322 bits (825), Expect = 3.500e-109
Identity = 158/169 (93.49%), Postives = 160/169 (94.67%), Query Frame = 1 
Query:    1 PRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARAAADDIVAEAYAASAAVQASRSLSFGEYRSQTYAAFHGGAGHAASAVGCAPISSMSGSDSGASRVLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTGPTHCFDCIIQCPNGDGT 507
            PRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLAR AA DIV+EAYA SAAVQASR LSFGEYRSQTYAAFHGGAGH AS  GCAPISSMSG DSGA R+LVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTGPTHCFDCIIQCPNGDGT
Sbjct:   69 PRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISSMSGPDSGARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTGPTHCFDCIIQCPNGDGT 237
[Close]
BLAST of jgi.p|Trimin1|134368 vs. uniprot
Match: A0A836CGZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGZ6_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.770e-34
Identity = 84/176 (47.73%), Postives = 98/176 (55.68%), Query Frame = 1 
Query:    1 PRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARAAA---DDIVAEAYAASAAVQASRSLSFGEYRSQTYAAFHGGAGHAASAVGCAPISSMSGSDSGASRVLVDPGSCTAAEKY-CWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTG--PTHCFDCIIQCPNGDGTY 510
            P+AP HEV SL + GAARAWFGRMYFP A A L        DD +  A  A         L+FG Y      AF  G GH+ASA GC+P  S      GA+R L D  SC AA K+ CWM C+AIP    CA + M CRNP +G FWP NY       P HC+DCI+QCP   G +
Sbjct:  279 PKAPLHEVVSLDISGAARAWFGRMYFPLADAKLHLQDGELLDDAIHNAVDAGG-------LTFGAYHQHASEAFRRGLGHSASAAGCSP--SAVSRHLGAARELADAASCKAAGKFFCWMSCQAIPKKARCAWSKMRCRNPKNGKFWPANYIDKKTKKPGHCYDCIVQCPKPGGGW 445
[Close]
BLAST of jgi.p|Trimin1|134368 vs. uniprot
Match: A0A835Z2A5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2A5_9STRA)

HSP 1 Score: 131 bits (329), Expect = 3.140e-34
Identity = 81/169 (47.93%), Postives = 94/169 (55.62%), Query Frame = 1 
Query:    1 PRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARAAA---DDIVAEAYAASAAVQASRSLSFGEYRSQTYAAFHGGAGHAASAVGCAPISSMSGSDSGASRVLVDPGSCTAAEKY-CWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTG--PTHCFDCIIQC 489
            P+AP HEV S+ + GAARAWFGRMYFP A A L        DD +  A+ A         L+FG Y      AF  G GH+ASA GC+P  S      GA+R L D  SC AA K+ CWM C+AIP    CA + M CRNP  G FWP NY       P HC DCI+QC
Sbjct:   70 PKAPLHEVVSMDVSGAARAWFGRMYFPLADAKLRLQDGELLDDAIHNAFDAGG-------LTFGAYHQHAAEAFRRGQGHSASAAGCSP--SAVSRHLGAARELADAASCKAAGKFFCWMSCQAIPKKPKCAWSKMRCRNPKTGKFWPANYIDKKTKKPGHCSDCIVQC 229
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|134368 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CJ88_9STRA1.320e-124100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z1Z9_9STRA3.500e-10993.49Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CGZ6_9STRA1.770e-3447.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z2A5_9STRA3.140e-3447.93Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_211contigContig_211:53225..53896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|134368|gw1.211.27.1
Hectar predicted targeting categoryother localisation
TranscriptId134690
TrackFilteredModels1
ProteinId134368
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134368gene_16523Tribonema minus UTEX_B_3156 geneContig_211 53225..53896 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16523_1exon_16523_1Tribonema minus UTEX_B_3156 exonContig_211 53225..53896 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16523CDS_16523Tribonema minus UTEX_B_3156 CDSContig_211 53225..53896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134368Trimin1|134368|gw1.211.27.1Tribonema minus UTEX_B_3156 polypeptideContig_211 53225..53896 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16523 ID=mRNA_16523|Name=jgi.p|Trimin1|134368|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=672bp|location=Sequence derived from alignment at Contig_211:53225..53896- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCCCGCGCACCGCCGCATGAAGTTCAGTCACTTCAGCTGGGCGGCGCAGC
GCGCGCATGGTTTGGCCGCATGTACTTCCCCGATGCCGCCGCCACCCTCG
CCCGCGCCGCCGCCGACGACATCGTCGCAGAGGCATACGCGGCTTCAGCA
GCAGTGCAGGCTTCACGCAGCCTGTCCTTTGGGGAGTACCGCAGCCAAAC
GTACGCAGCATTCCACGGCGGCGCCGGCCACGCTGCAAGCGCTGTTGGCT
GCGCTCCCATCAGCAGCATGAGCGGTTCTGACAGCGGAGCGAGTAGAGTG
TTGGTGGACCCCGGGTCGTGCACGGCTGCGGAGAAGTACTGCTGGATGGG
CTGCCGCGCCATACCGGCTGACCTCGTCTGCGCGTCAGCAGACATGGTGT
GCCGCAACCCCATCGATGGCACATTCTGGCCGGAGAACTACACAACACCG
ACAGGCCCCACGCACTGCTTTGACTGCATCATTCAGTGCCCCAACGGCGA
CGGGACGTACGGCACTGGCGCGACGCCCACCCCTACGCCGACGCCGCCGC
CCACAAACAAGCCTACACGCAAGCCAACACGCACGCCCACCAGCAAGCCT
ACACGCAAGCCAACGCACACGCCGACGTCCAAGCCCACGCGCCAACCGAC
GCGCAAACCGACGCGCAAACCG
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protein sequence of jgi.p|Trimin1|134368

>Trimin1|134368|gw1.211.27.1 ID=Trimin1|134368|gw1.211.27.1|Name=jgi.p|Trimin1|134368|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=224bp
PRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARAAADDIVAEAYAASA
AVQASRSLSFGEYRSQTYAAFHGGAGHAASAVGCAPISSMSGSDSGASRV
LVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTP
TGPTHCFDCIIQCPNGDGTYGTGATPTPTPTPPPTNKPTRKPTRTPTSKP
TRKPTHTPTSKPTRQPTRKPTRKP
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mRNA from alignment at Contig_211:53225..53896-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16523 ID=mRNA_16523|Name=jgi.p|Trimin1|134368|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=672bp|location=Sequence derived from alignment at Contig_211:53225..53896- (Tribonema minus UTEX_B_3156 )
CCCCGCGCACCGCCGCATGAAGTTCAGTCACTTCAGCTGGGCGGCGCAGC
GCGCGCATGGTTTGGCCGCATGTACTTCCCCGATGCCGCCGCCACCCTCG
CCCGCGCCGCCGCCGACGACATCGTCGCAGAGGCATACGCGGCTTCAGCA
GCAGTGCAGGCTTCACGCAGCCTGTCCTTTGGGGAGTACCGCAGCCAAAC
GTACGCAGCATTCCACGGCGGCGCCGGCCACGCTGCAAGCGCTGTTGGCT
GCGCTCCCATCAGCAGCATGAGCGGTTCTGACAGCGGAGCGAGTAGAGTG
TTGGTGGACCCCGGGTCGTGCACGGCTGCGGAGAAGTACTGCTGGATGGG
CTGCCGCGCCATACCGGCTGACCTCGTCTGCGCGTCAGCAGACATGGTGT
GCCGCAACCCCATCGATGGCACATTCTGGCCGGAGAACTACACAACACCG
ACAGGCCCCACGCACTGCTTTGACTGCATCATTCAGTGCCCCAACGGCGA
CGGGACGTACGGCACTGGCGCGACGCCCACCCCTACGCCGACGCCGCCGC
CCACAAACAAGCCTACACGCAAGCCAACACGCACGCCCACCAGCAAGCCT
ACACGCAAGCCAACGCACACGCCGACGTCCAAGCCCACGCGCCAACCGAC
GCGCAAACCGACGCGCAAACCG
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Coding sequence (CDS) from alignment at Contig_211:53225..53896-

>mRNA_16523 ID=mRNA_16523|Name=jgi.p|Trimin1|134368|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=672bp|location=Sequence derived from alignment at Contig_211:53225..53896- (Tribonema minus UTEX_B_3156 )
CCCCGCGCACCGCCGCATGAAGTTCAGTCACTTCAGCTGGGCGGCGCAGC
GCGCGCATGGTTTGGCCGCATGTACTTCCCCGATGCCGCCGCCACCCTCG
CCCGCGCCGCCGCCGACGACATCGTCGCAGAGGCATACGCGGCTTCAGCA
GCAGTGCAGGCTTCACGCAGCCTGTCCTTTGGGGAGTACCGCAGCCAAAC
GTACGCAGCATTCCACGGCGGCGCCGGCCACGCTGCAAGCGCTGTTGGCT
GCGCTCCCATCAGCAGCATGAGCGGTTCTGACAGCGGAGCGAGTAGAGTG
TTGGTGGACCCCGGGTCGTGCACGGCTGCGGAGAAGTACTGCTGGATGGG
CTGCCGCGCCATACCGGCTGACCTCGTCTGCGCGTCAGCAGACATGGTGT
GCCGCAACCCCATCGATGGCACATTCTGGCCGGAGAACTACACAACACCG
ACAGGCCCCACGCACTGCTTTGACTGCATCATTCAGTGCCCCAACGGCGA
CGGGACGTACGGCACTGGCGCGACGCCCACCCCTACGCCGACGCCGCCGC
CCACAAACAAGCCTACACGCAAGCCAACACGCACGCCCACCAGCAAGCCT
ACACGCAAGCCAACGCACACGCCGACGTCCAAGCCCACGCGCCAACCGAC
GCGCAAACCGACGCGCAAACCG
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