mRNA_16460 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|135728 vs. uniprot
Match: A0A835Z7Y1_9STRA (Peptidase S74 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Y1_9STRA) HSP 1 Score: 178 bits (451), Expect = 8.560e-57 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 Query: 1 SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK 258 SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK Sbjct: 1 SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK 86
BLAST of jgi.p|Trimin1|135728 vs. uniprot
Match: A0A835YYF2_9STRA (Peptidase S74 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYF2_9STRA) HSP 1 Score: 157 bits (398), Expect = 3.550e-45 Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 1 Query: 1 SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK 258 SSDRRLKENIVPLSATLNDLS+IMGVRFTWREGTPE+R DA QIGFIAQNVKTVFPELVGGD+EKG LGVNYA FAPILVEGVK Sbjct: 201 SSDRRLKENIVPLSATLNDLSHIMGVRFTWREGTPEHRRDKDAQQIGFIAQNVKTVFPELVGGDDEKGRLGVNYAGFAPILVEGVK 286
BLAST of jgi.p|Trimin1|135728 vs. uniprot
Match: A0A520WE41_9BACT (Peptidase S74 domain-containing protein (Fragment) n=1 Tax=bacterium TaxID=1869227 RepID=A0A520WE41_9BACT) HSP 1 Score: 79.3 bits (194), Expect = 4.470e-16 Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 1 Query: 1 SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK 258 SSDRR K+NI +S L LS + V + WR+ E++ GD Q GFIAQ +K +FPELVG D+E L +NY F P+L + V+ Sbjct: 108 SSDRRFKKNISTVSGALQKLSKLNPVNYDWRQDEFEHKGFGDKKQWGFIAQEIKEIFPELVGKDDED-FLTLNYQGFVPLLTKAVQ 192
BLAST of jgi.p|Trimin1|135728 vs. uniprot
Match: UPI0019AAA90E (Uncharacterized protein n=2 Tax=Roseivirga thermotolerans TaxID=1758176 RepID=UPI0019AAA90E) HSP 1 Score: 76.6 bits (187), Expect = 2.020e-14 Identity = 38/86 (44.19%), Postives = 55/86 (63.95%), Query Frame = 1 Query: 1 SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK 258 +SD R KE+I P++ L +L + G + WR+ R+ D QIGFIAQ+V+ +FP+LV DE G+L +NYA P+LVE +K Sbjct: 1177 TSDERFKESISPINGALENLLKLEGKTYYWRKEEFSDRNFSDKLQIGFIAQDVQKIFPQLVEADEH-GYLSLNYAQLTPVLVEAMK 1261
BLAST of jgi.p|Trimin1|135728 vs. uniprot
Match: UPI0019A45000 (Tail fiber domain-containing protein n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=UPI0019A45000) HSP 1 Score: 76.3 bits (186), Expect = 2.040e-14 Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = 1 Query: 1 SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK 258 SSDRRLK NI L L D+ ++ V +TW + + S D QIG IAQ+ K+V PELV GDE+KG L +NY P+L+ +K Sbjct: 275 SSDRRLKNNIKGLQYGLGDILKLVPVTYTW----VDEKQSKDT-QIGLIAQDTKSVIPELVTGDEQKGTLSINYTELVPVLINAIK 355
BLAST of jgi.p|Trimin1|135728 vs. uniprot
Match: A0A3D5X7T9_9BACT (Peptidase S74 domain-containing protein (Fragment) n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A3D5X7T9_9BACT) HSP 1 Score: 72.4 bits (176), Expect = 4.290e-14 Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 1 Query: 1 SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK 258 +SD RLKENI LS +L + + GV FTW+ ++GFIAQ V+ V PELV + E G++GVNYA +LVE VK Sbjct: 50 TSDVRLKENISTLSGSLAKVMTLRGVNFTWKS------EPSMGNRVGFIAQEVEKVVPELVFTNSEDGYMGVNYAEMTAVLVEAVK 129
BLAST of jgi.p|Trimin1|135728 vs. uniprot
Match: A0A1I1FA42_9BACT (Chaperone of endosialidase n=1 Tax=Flexibacter flexilis DSM 6793 TaxID=927664 RepID=A0A1I1FA42_9BACT) HSP 1 Score: 75.1 bits (183), Expect = 6.960e-14 Identity = 40/86 (46.51%), Postives = 52/86 (60.47%), Query Frame = 1 Query: 1 SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK 258 SSDRR K++I LS L + + GV + WR+ + + D Q+GFIAQ V+ + PELV D KG VNYA F PILVE +K Sbjct: 887 SSDRRYKKDIRKLSGALTTIKQLRGVNYLWRKDEFKDKKFDDRLQVGFIAQEVEAIVPELVHTDS-KGFKAVNYAQFTPILVEALK 971
BLAST of jgi.p|Trimin1|135728 vs. uniprot
Match: A0A4Q3EKD9_9SPHI (Peptidase S74 domain-containing protein n=1 Tax=Sphingobacteriales bacterium TaxID=2044944 RepID=A0A4Q3EKD9_9SPHI) HSP 1 Score: 74.3 bits (181), Expect = 1.280e-13 Identity = 35/86 (40.70%), Postives = 57/86 (66.28%), Query Frame = 1 Query: 1 SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK 258 +SD R K+NI PL ++L ++ I GV++ W++ ++ D Q+GFIAQ+++ ++PE+V D KG+ V+YA P+LVE VK Sbjct: 631 ASDLRYKKNITPLQSSLQNILKINGVQYDWKQDEFPEQNFSDKKQLGFIAQDLEKIYPEMVFTDS-KGYKSVDYARLTPVLVEAVK 715
BLAST of jgi.p|Trimin1|135728 vs. uniprot
Match: UPI001EEAEE59 (tail fiber domain-containing protein n=1 Tax=Emticicia aquatica TaxID=1681835 RepID=UPI001EEAEE59) HSP 1 Score: 73.9 bits (180), Expect = 1.720e-13 Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 1 Query: 4 SDRRLKENIVPLSATLNDLSNIMGVRFTW-REGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK 258 SD R K+NI L+ +L ++ I GVR+ + RE PE R+ D QIGFIAQ ++ +FPE+V DE KG+ V+YA F P+LVE +K Sbjct: 436 SDLRYKKNITSLNNSLENILQINGVRYDFKREEFPE-RNFSDKNQIGFIAQEIEKLFPEMVFTDE-KGYKSVDYAKFTPVLVEAIK 519
BLAST of jgi.p|Trimin1|135728 vs. uniprot
Match: A0A431U0X5_9BACT (Tail fiber domain-containing protein n=1 Tax=Hymenobacter gummosus TaxID=1776032 RepID=A0A431U0X5_9BACT) HSP 1 Score: 73.9 bits (180), Expect = 1.740e-13 Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 1 Query: 1 SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK 258 +SD+RLKE I PL L + + GVR+T+R + QIG +AQ V+TVFPELV D + G+ VNYA AP+L+E +K Sbjct: 521 TSDQRLKEQIRPLGGALARVQALRGVRYTFRHAQYPALNLPQGEQIGLLAQEVETVFPELVSTDAQ-GYKAVNYAQLAPVLIEALK 605 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135728 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16460 ID=mRNA_16460|Name=jgi.p|Trimin1|135728|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=258bp|location=Sequence derived from alignment at Contig_162:103464..103721- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TCCTCCGATCGTCGTCTGAAGGAGAACATAGTACCACTGTCTGCCACGCTback to top protein sequence of jgi.p|Trimin1|135728 >Trimin1|135728|gw1.162.13.1 ID=Trimin1|135728|gw1.162.13.1|Name=jgi.p|Trimin1|135728|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=86bp SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAback to top mRNA from alignment at Contig_162:103464..103721- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16460 ID=mRNA_16460|Name=jgi.p|Trimin1|135728|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=258bp|location=Sequence derived from alignment at Contig_162:103464..103721- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_162:103464..103721- >mRNA_16460 ID=mRNA_16460|Name=jgi.p|Trimin1|135728|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=258bp|location=Sequence derived from alignment at Contig_162:103464..103721- (Tribonema minus UTEX_B_3156 )back to top |