mRNA_16460 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|135728
Unique NamemRNA_16460
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|135728 vs. uniprot
Match: A0A835Z7Y1_9STRA (Peptidase S74 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Y1_9STRA)

HSP 1 Score: 178 bits (451), Expect = 8.560e-57
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1
Query:    1 SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK 258
            SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK
Sbjct:    1 SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK 86          
BLAST of jgi.p|Trimin1|135728 vs. uniprot
Match: A0A835YYF2_9STRA (Peptidase S74 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYF2_9STRA)

HSP 1 Score: 157 bits (398), Expect = 3.550e-45
Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 1
Query:    1 SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK 258
            SSDRRLKENIVPLSATLNDLS+IMGVRFTWREGTPE+R   DA QIGFIAQNVKTVFPELVGGD+EKG LGVNYA FAPILVEGVK
Sbjct:  201 SSDRRLKENIVPLSATLNDLSHIMGVRFTWREGTPEHRRDKDAQQIGFIAQNVKTVFPELVGGDDEKGRLGVNYAGFAPILVEGVK 286          
BLAST of jgi.p|Trimin1|135728 vs. uniprot
Match: A0A520WE41_9BACT (Peptidase S74 domain-containing protein (Fragment) n=1 Tax=bacterium TaxID=1869227 RepID=A0A520WE41_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 4.470e-16
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    1 SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK 258
            SSDRR K+NI  +S  L  LS +  V + WR+   E++  GD  Q GFIAQ +K +FPELVG D+E   L +NY  F P+L + V+
Sbjct:  108 SSDRRFKKNISTVSGALQKLSKLNPVNYDWRQDEFEHKGFGDKKQWGFIAQEIKEIFPELVGKDDED-FLTLNYQGFVPLLTKAVQ 192          
BLAST of jgi.p|Trimin1|135728 vs. uniprot
Match: UPI0019AAA90E (Uncharacterized protein n=2 Tax=Roseivirga thermotolerans TaxID=1758176 RepID=UPI0019AAA90E)

HSP 1 Score: 76.6 bits (187), Expect = 2.020e-14
Identity = 38/86 (44.19%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    1 SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK 258
            +SD R KE+I P++  L +L  + G  + WR+     R+  D  QIGFIAQ+V+ +FP+LV  DE  G+L +NYA   P+LVE +K
Sbjct: 1177 TSDERFKESISPINGALENLLKLEGKTYYWRKEEFSDRNFSDKLQIGFIAQDVQKIFPQLVEADEH-GYLSLNYAQLTPVLVEAMK 1261          
BLAST of jgi.p|Trimin1|135728 vs. uniprot
Match: UPI0019A45000 (Tail fiber domain-containing protein n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=UPI0019A45000)

HSP 1 Score: 76.3 bits (186), Expect = 2.040e-14
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    1 SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK 258
            SSDRRLK NI  L   L D+  ++ V +TW     + + S D  QIG IAQ+ K+V PELV GDE+KG L +NY    P+L+  +K
Sbjct:  275 SSDRRLKNNIKGLQYGLGDILKLVPVTYTW----VDEKQSKDT-QIGLIAQDTKSVIPELVTGDEQKGTLSINYTELVPVLINAIK 355          
BLAST of jgi.p|Trimin1|135728 vs. uniprot
Match: A0A3D5X7T9_9BACT (Peptidase S74 domain-containing protein (Fragment) n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A3D5X7T9_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 4.290e-14
Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    1 SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK 258
            +SD RLKENI  LS +L  +  + GV FTW+             ++GFIAQ V+ V PELV  + E G++GVNYA    +LVE VK
Sbjct:   50 TSDVRLKENISTLSGSLAKVMTLRGVNFTWKS------EPSMGNRVGFIAQEVEKVVPELVFTNSEDGYMGVNYAEMTAVLVEAVK 129          
BLAST of jgi.p|Trimin1|135728 vs. uniprot
Match: A0A1I1FA42_9BACT (Chaperone of endosialidase n=1 Tax=Flexibacter flexilis DSM 6793 TaxID=927664 RepID=A0A1I1FA42_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 6.960e-14
Identity = 40/86 (46.51%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    1 SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK 258
            SSDRR K++I  LS  L  +  + GV + WR+   + +   D  Q+GFIAQ V+ + PELV  D  KG   VNYA F PILVE +K
Sbjct:  887 SSDRRYKKDIRKLSGALTTIKQLRGVNYLWRKDEFKDKKFDDRLQVGFIAQEVEAIVPELVHTDS-KGFKAVNYAQFTPILVEALK 971          
BLAST of jgi.p|Trimin1|135728 vs. uniprot
Match: A0A4Q3EKD9_9SPHI (Peptidase S74 domain-containing protein n=1 Tax=Sphingobacteriales bacterium TaxID=2044944 RepID=A0A4Q3EKD9_9SPHI)

HSP 1 Score: 74.3 bits (181), Expect = 1.280e-13
Identity = 35/86 (40.70%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    1 SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK 258
            +SD R K+NI PL ++L ++  I GV++ W++     ++  D  Q+GFIAQ+++ ++PE+V  D  KG+  V+YA   P+LVE VK
Sbjct:  631 ASDLRYKKNITPLQSSLQNILKINGVQYDWKQDEFPEQNFSDKKQLGFIAQDLEKIYPEMVFTDS-KGYKSVDYARLTPVLVEAVK 715          
BLAST of jgi.p|Trimin1|135728 vs. uniprot
Match: UPI001EEAEE59 (tail fiber domain-containing protein n=1 Tax=Emticicia aquatica TaxID=1681835 RepID=UPI001EEAEE59)

HSP 1 Score: 73.9 bits (180), Expect = 1.720e-13
Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    4 SDRRLKENIVPLSATLNDLSNIMGVRFTW-REGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK 258
            SD R K+NI  L+ +L ++  I GVR+ + RE  PE R+  D  QIGFIAQ ++ +FPE+V  DE KG+  V+YA F P+LVE +K
Sbjct:  436 SDLRYKKNITSLNNSLENILQINGVRYDFKREEFPE-RNFSDKNQIGFIAQEIEKLFPEMVFTDE-KGYKSVDYAKFTPVLVEAIK 519          
BLAST of jgi.p|Trimin1|135728 vs. uniprot
Match: A0A431U0X5_9BACT (Tail fiber domain-containing protein n=1 Tax=Hymenobacter gummosus TaxID=1776032 RepID=A0A431U0X5_9BACT)

HSP 1 Score: 73.9 bits (180), Expect = 1.740e-13
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    1 SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIAQNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK 258
            +SD+RLKE I PL   L  +  + GVR+T+R       +     QIG +AQ V+TVFPELV  D + G+  VNYA  AP+L+E +K
Sbjct:  521 TSDQRLKEQIRPLGGALARVQALRGVRYTFRHAQYPALNLPQGEQIGLLAQEVETVFPELVSTDAQ-GYKAVNYAQLAPVLIEALK 605          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135728 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7Y1_9STRA8.560e-57100.00Peptidase S74 domain-containing protein (Fragment)... [more]
A0A835YYF2_9STRA3.550e-4589.53Peptidase S74 domain-containing protein n=1 Tax=Tr... [more]
A0A520WE41_9BACT4.470e-1646.51Peptidase S74 domain-containing protein (Fragment)... [more]
UPI0019AAA90E2.020e-1444.19Uncharacterized protein n=2 Tax=Roseivirga thermot... [more]
UPI0019A450002.040e-1446.51Tail fiber domain-containing protein n=1 Tax=Sphin... [more]
A0A3D5X7T9_9BACT4.290e-1445.35Peptidase S74 domain-containing protein (Fragment)... [more]
A0A1I1FA42_9BACT6.960e-1446.51Chaperone of endosialidase n=1 Tax=Flexibacter fle... [more]
A0A4Q3EKD9_9SPHI1.280e-1340.70Peptidase S74 domain-containing protein n=1 Tax=Sp... [more]
UPI001EEAEE591.720e-1348.84tail fiber domain-containing protein n=1 Tax=Emtic... [more]
A0A431U0X5_9BACT1.740e-1345.35Tail fiber domain-containing protein n=1 Tax=Hymen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_162contigContig_162:103464..103721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|135728|gw1.162.13.1
DescriptionChaperone of endosialidase
COG categoryM
Max annot lvl976|Bacteroidetes
EggNOG OGsCOG0729@1|root,COG0729@2|Bacteria,4NVBC@976|Bacteroidetes,47Y1F@768503|Cytophagia
Evalue1.23e-12
Seed ortholog880071.Fleli_3340
Hectar predicted targeting categoryother localisation
TranscriptId136050
TrackFilteredModels1
ProteinId135728
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135728gene_16460Tribonema minus UTEX_B_3156 geneContig_162 103464..103721 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16460_1exon_16460_1Tribonema minus UTEX_B_3156 exonContig_162 103464..103721 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16460CDS_16460Tribonema minus UTEX_B_3156 CDSContig_162 103464..103721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135728Trimin1|135728|gw1.162.13.1Tribonema minus UTEX_B_3156 polypeptideContig_162 103464..103721 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16460 ID=mRNA_16460|Name=jgi.p|Trimin1|135728|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=258bp|location=Sequence derived from alignment at Contig_162:103464..103721- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TCCTCCGATCGTCGTCTGAAGGAGAACATAGTACCACTGTCTGCCACGCT
CAACGACCTGTCCAACATCATGGGCGTACGGTTCACGTGGCGCGAAGGTA
CGCCAGAATACAGGCACAGCGGGGATGCGCCGCAAATAGGGTTCATTGCG
CAGAACGTGAAGACGGTTTTCCCGGAGCTTGTAGGGGGTGATGAGGAGAA
GGGGCACCTCGGCGTCAACTACGCAGCTTTTGCGCCCATCCTTGTCGAGG
GGGTCAAG
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protein sequence of jgi.p|Trimin1|135728

>Trimin1|135728|gw1.162.13.1 ID=Trimin1|135728|gw1.162.13.1|Name=jgi.p|Trimin1|135728|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=86bp
SSDRRLKENIVPLSATLNDLSNIMGVRFTWREGTPEYRHSGDAPQIGFIA
QNVKTVFPELVGGDEEKGHLGVNYAAFAPILVEGVK
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mRNA from alignment at Contig_162:103464..103721-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16460 ID=mRNA_16460|Name=jgi.p|Trimin1|135728|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=258bp|location=Sequence derived from alignment at Contig_162:103464..103721- (Tribonema minus UTEX_B_3156 )
TCCTCCGATCGTCGTCTGAAGGAGAACATAGTACCACTGTCTGCCACGCT CAACGACCTGTCCAACATCATGGGCGTACGGTTCACGTGGCGCGAAGGTA CGCCAGAATACAGGCACAGCGGGGATGCGCCGCAAATAGGGTTCATTGCG CAGAACGTGAAGACGGTTTTCCCGGAGCTTGTAGGGGGTGATGAGGAGAA GGGGCACCTCGGCGTCAACTACGCAGCTTTTGCGCCCATCCTTGTCGAGG GGGTCAAG
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Coding sequence (CDS) from alignment at Contig_162:103464..103721-

>mRNA_16460 ID=mRNA_16460|Name=jgi.p|Trimin1|135728|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=258bp|location=Sequence derived from alignment at Contig_162:103464..103721- (Tribonema minus UTEX_B_3156 )
TCCTCCGATCGTCGTCTGAAGGAGAACATAGTACCACTGTCTGCCACGCT
CAACGACCTGTCCAACATCATGGGCGTACGGTTCACGTGGCGCGAAGGTA
CGCCAGAATACAGGCACAGCGGGGATGCGCCGCAAATAGGGTTCATTGCG
CAGAACGTGAAGACGGTTTTCCCGGAGCTTGTAGGGGGTGATGAGGAGAA
GGGGCACCTCGGCGTCAACTACGCAGCTTTTGCGCCCATCCTTGTCGAGG
GGGTCAAG
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