mRNA_16267 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|36698
Unique NamemRNA_16267
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|36698 vs. uniprot
Match: A0A835Z4H5_9STRA (Chloroplast 50S ribosomal protein L15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4H5_9STRA)

HSP 1 Score: 439 bits (1128), Expect = 1.670e-154
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 2
Query:   41 MRSFLYLAACLVIAAVSDAFTASAFHGQALCAATGKASSSISMKIFDWKRRESDSFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVVGNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVDMSA 718
            MRSFLYLAACLVIAAVSDAFTASAFHGQALCAATGKASSSISMKIFDWKRRESDSFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVVGNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVDMSA
Sbjct:    1 MRSFLYLAACLVIAAVSDAFTASAFHGQALCAATGKASSSISMKIFDWKRRESDSFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVVGNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVDMSA 226          
BLAST of jgi.p|Trimin1|36698 vs. uniprot
Match: A0A836CHQ3_9STRA (Chloroplast 50S ribosomal protein L15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ3_9STRA)

HSP 1 Score: 367 bits (943), Expect = 2.580e-126
Identity = 191/220 (86.82%), Postives = 205/220 (93.18%), Query Frame = 2
Query:   59 LAACL-VIAAVSDAFTA-SAFHGQALCAATGKASSSISMKIFDWKRRESDSFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVVGNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVDM 712
            +AACL ++ AV+DA+ A SAF+GQA+   T KAS+++SMKIFDWKRR+ DS N AV ELSPATL PSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEG+TVSFETLHEQGTLTKTSL+WHKVVGNGELNV+ LTVQAHAFTGSAKEAIE AGGKCQLLSPTTNEIVDM
Sbjct:    6 VAACLALVVAVADAWVATSAFNGQAVGTHTCKASNAVSMKIFDWKRRDDDSANTAVKELSPATLVPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGSTVSFETLHEQGTLTKTSLKWHKVVGNGELNVKNLTVQAHAFTGSAKEAIEGAGGKCQLLSPTTNEIVDM 225          
BLAST of jgi.p|Trimin1|36698 vs. uniprot
Match: D7FKW4_ECTSI (Chloroplast 50S ribosomal protein L15 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW4_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 3.130e-88
Identity = 144/227 (63.44%), Postives = 169/227 (74.45%), Query Frame = 2
Query:   41 MRSFLYLAACLVIAAVSDAFTASAFHGQALCAATG---KASSSISMKIFDWKRRESDSFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVVGNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVDM 712
            M++ L   A   +   +  F  +AF GQ L A T    + ++ ++MKIFDWKRRES+   L +  ++  TL P+PGSR R  RKGRGI+AGQGASCGFGMRGQ+SRSGPGVRAGFEGGQQPLYRRLPK VGRPMGPGHTKK+F+LI L+ALN   EGATV+FE+L   G +TKT  RWHKVVG  EL   GLTVQAH FT SA EAIE  GGKCQLLSPTTNE++ M
Sbjct:    1 MKATLATTALFCVGVANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESED-GLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSM 226          
BLAST of jgi.p|Trimin1|36698 vs. uniprot
Match: A0A7S1BKP2_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKP2_9STRA)

HSP 1 Score: 242 bits (618), Expect = 5.970e-77
Identity = 131/220 (59.55%), Postives = 166/220 (75.45%), Query Frame = 2
Query:   71 LVIAAV---SDAFTASAFHGQALCAATGKASSSISMKIFDWKRRESDSFNLAVTELSPATLT---PSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVV-GNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVD 709
            +++AAV   +DAF  S+FHG ++      ++SS++MK+FDWKRRE+D   +   E    TL    P+PGSRHRK RKGRGI+AGQGA+CGFGMRGQ+SRSG   RAGFEGGQQPLYRRLPKFVG+PMGPGH+K  ++LI L+ LN AAEG+TV+F +L E G +TK+ +  HKVV G  E   +GL VQAHAFT SA+ AIE AGGKC+LLSPTT  +++
Sbjct:    6 VILAAVVVSTDAF--SSFHGSSVSQHVSTSTSSLTMKVFDWKRREADESAINDAENFVFTLDNLKPAPGSRHRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRAGFEGGQQPLYRRLPKFVGKPMGPGHSKTVYNLIKLDELNGAAEGSTVNFASLFESGDITKSKVGIHKVVTGKKEFTAKGLIVQAHAFTSSAQTAIEGAGGKCELLSPTTGAVLE 223          
BLAST of jgi.p|Trimin1|36698 vs. uniprot
Match: A0A7S1BF06_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BF06_9STRA)

HSP 1 Score: 234 bits (596), Expect = 1.280e-73
Identity = 130/220 (59.09%), Postives = 160/220 (72.73%), Query Frame = 2
Query:   65 ACLVIAAVSDAFTA-SAFHGQALCAATGKASSSISMKIFDWKRRESDSFNLAVTELSPATLT---PSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVV-GNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVD 709
            A L+ AAV+    A S+FHG ++      A+   +MK+FDWKRRE+D   +   E    TL    P+PGSRHRK RKGRGI+AGQGA+CGFGMRGQ+SRSG   RAGFEGGQQPLYRRLPKFVG+PMGPGH+K  ++LI  + +N AAEG+TVSF +L E G +TK     HKVV G  E + +G+TVQAHAFT SA+ AIE AGGKC+LLSPTT  ++D
Sbjct:    5 AVLLAAAVAVPVDALSSFHGSSVAHRVSTATGP-TMKVFDWKRREADESAINDAETFVFTLDNLKPAPGSRHRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRAGFEGGQQPLYRRLPKFVGKPMGPGHSKTVYNLIKTDEINGAAEGSTVSFGSLFEAGDVTKAKYGIHKVVTGKKEFSAKGVTVQAHAFTNSARAAIEGAGGKCELLSPTTGAVLD 223          
BLAST of jgi.p|Trimin1|36698 vs. uniprot
Match: A0A448ZNF8_9STRA (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNF8_9STRA)

HSP 1 Score: 232 bits (592), Expect = 4.670e-73
Identity = 124/220 (56.36%), Postives = 160/220 (72.73%), Query Frame = 2
Query:   59 LAACLVIAAVSDAFTASAFHGQALCAATGKASSSISMKIFDWKRR---ESDSFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVV-GNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIV 706
            +A  +++A V+     S+F G  L A +  +++++SMK+ DWKRR   ESD  ++   E +  +L P+PGSR +K RKGRGISAGQGA+CGFGMRGQ+SRSG   R GFEGGQQPLYRRLPKF GRPMGPGHTKKE++LI L+ALN  A G+T +FE+L E   +TK+    HKVV G  E   + +TVQAHAFT SA+ AIE AGGKC+LL P+T E++
Sbjct:    3 VAGLILLAGVASTDAFSSFTGTRLAAVSTSSANTLSMKLHDWKRRTADESDINDVENYEFTLDSLRPAPGSRKKKTRKGRGISAGQGATCGFGMRGQKSRSGRPTRPGFEGGQQPLYRRLPKFTGRPMGPGHTKKEYNLIQLDALNGVAPGSTCNFESLFESKAVTKSKHSTHKVVVGREEFTAKDITVQAHAFTKSARAAIEGAGGKCELLKPSTGEVI 222          
BLAST of jgi.p|Trimin1|36698 vs. uniprot
Match: A0A6U3RP18_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3RP18_9STRA)

HSP 1 Score: 226 bits (576), Expect = 1.400e-70
Identity = 128/225 (56.89%), Postives = 159/225 (70.67%), Query Frame = 2
Query:   53 LYLAACLV--IAAVSDAFTASAFHGQALCAATGKASSSISMKIFDWKRRESDSFNLAV---TELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVV-GNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVD 709
            L LAA +V   AA S +FT SA     +C+     +S++SMKIFDWKRRE+D   L     TE +   L P+PGSR RK RKGRGISAGQGA+CGFGMRGQ++R+G   R GFEGGQQPLYRRLPKFVGRP GPGHTK E+++I L+ LN AA G TV+F+TL E G +TK+ L  HKVV G  +   + +TVQAH FT +A+ AIE  GG CQ+L  TT E+++
Sbjct:    8 LLLAAVMVSTAAAFSSSFTPSAQRVSTVCS-----TSNLSMKIFDWKRREADESALNDVDNTEFTFDNLRPAPGSRKRKNRKGRGISAGQGATCGFGMRGQKARAGRPTRPGFEGGQQPLYRRLPKFVGRPTGPGHTKTEYNIIKLDELNGAAAGETVNFDTLFEAGAITKSKLDIHKVVVGREDFTAKDITVQAHGFTKAARAAIEANGGTCQILKRTTGEVIE 227          
BLAST of jgi.p|Trimin1|36698 vs. uniprot
Match: K0SHX0_THAOC (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SHX0_THAOC)

HSP 1 Score: 225 bits (573), Expect = 3.280e-70
Identity = 120/194 (61.86%), Postives = 144/194 (74.23%), Query Frame = 2
Query:  134 AATGKASSSISMKIFDWKRRESD--SFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVV-GNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIV 706
            A T  + S +SMK++DWKRR +D  + N   TE +  ++ P+PGSR RK RKGRGISAGQGA+CGFGMRGQ++RSG   R GFEGGQQPLYRRLPKF GRP GPGH K E++LI L+ +N   EG+TVSFE+L E G  TK  L  HKVV G  E   +G+TVQAHAFT SA+EAIE AGGK  LLS TTNE++
Sbjct:   28 AVTSSSPSQLSMKLYDWKRRTADESAVNDLETEWTLGSIKPAPGSRKRKQRKGRGISAGQGATCGFGMRGQKARSGRPTRPGFEGGQQPLYRRLPKFTGRPTGPGHQKTEYNLIKLDDINGCEEGSTVSFESLIETGATTKAKLDIHKVVVGREEFTAKGVTVQAHAFTKSAQEAIEGAGGKAVLLSKTTNEVL 221          
BLAST of jgi.p|Trimin1|36698 vs. uniprot
Match: A0A5J4Z048_PORPP (50S ribosomal protein L15 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z048_PORPP)

HSP 1 Score: 225 bits (573), Expect = 3.730e-70
Identity = 112/185 (60.54%), Postives = 141/185 (76.22%), Query Frame = 2
Query:  164 SMKIFDWKRRESDSFN--LAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVVGNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVDM 712
            SMK+FDWK+R +++++    + E+S  T+ P+PGSR RK RKGRG++AGQG SCGFGMRGQ+SRSG   R GFEGGQ PLYRRLPK+VGRPMGPGHTK  ++L+ L+ LN  AEG  V+F+ L E G +TK   +  K++G  EL V+ LTV+AHAFT SA EAIE AGGKC LLSPTT E ++M
Sbjct:   38 SMKVFDWKKRGAEAYSGRAEMGEMSVTTVIPAPGSRKRKTRKGRGVAAGQGRSCGFGMRGQKSRSGNPTRPGFEGGQTPLYRRLPKYVGRPMGPGHTKTMYNLVKLDILNKCAEGEVVTFDALVESGKMTKGKFKLAKIMGGAELTVKNLTVKAHAFTSSAVEAIEAAGGKCVLLSPTTGEDINM 222          
BLAST of jgi.p|Trimin1|36698 vs. uniprot
Match: A0A7S1H2P5_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H2P5_9STRA)

HSP 1 Score: 222 bits (566), Expect = 4.410e-69
Identity = 118/196 (60.20%), Postives = 147/196 (75.00%), Query Frame = 2
Query:  134 AATGKASSSISMKIFDWKRRESDSFNLAVTE---LSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVV-GNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVD 709
            A+  K+SS++SMKIFDWKRRE+D   L   +    +  T+ P+PGSR RK RKGRGI+AGQGA+CGFGMRGQ+SRSG   R GFEGGQ PLYRRLPKFVG+P+GPGHTK  ++LI L  +NSA  G+T +FE+L E G  TK+    HKVV GN E   + +TVQAHAFT +A+ AIENAGGKC+LL  TT E+++
Sbjct:   31 ASVPKSSSNLSMKIFDWKRREADESALNDPDGPVWTVNTVKPAPGSRKRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPERPGFEGGQTPLYRRLPKFVGKPLGPGHTKTVYNLIKLNQINSAEPGSTCNFESLLESGIATKSRYPIHKVVVGNDEFTAKDVTVQAHAFTAAARAAIENAGGKCELLKRTTGEVIE 226          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|36698 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4H5_9STRA1.670e-154100.00Chloroplast 50S ribosomal protein L15 n=1 Tax=Trib... [more]
A0A836CHQ3_9STRA2.580e-12686.82Chloroplast 50S ribosomal protein L15 n=1 Tax=Trib... [more]
D7FKW4_ECTSI3.130e-8863.44Chloroplast 50S ribosomal protein L15 n=1 Tax=Ecto... [more]
A0A7S1BKP2_9STRA5.970e-7759.55Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S1BF06_9STRA1.280e-7359.09Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A448ZNF8_9STRA4.670e-7356.36Ribosomal_L18e/L15P domain-containing protein n=1 ... [more]
A0A6U3RP18_9STRA1.400e-7056.89Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
K0SHX0_THAOC3.280e-7061.86Ribosomal_L18e/L15P domain-containing protein n=1 ... [more]
A0A5J4Z048_PORPP3.730e-7060.5450S ribosomal protein L15 n=1 Tax=Porphyridium pur... [more]
A0A7S1H2P5_9STRA4.410e-6960.20Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_196contigContig_196:227680..231059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|36698|CE36697_1051
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
KEGG ModuleM00178,M00179
KEGG Pathwayko03010,map03010
KEGG koko:K02876
GOsGO:0000311,GO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009547,GO:0009570,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0019538,GO:0031967,GO:0031975,GO:0032991,GO:0034641,GO:0034645,GO:0042221,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Preferred namePRPL15
Descriptionstructural constituent of ribosome
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0200@1|root,KOG0846@2759|Eukaryota
Evalue4.69e-90
Seed ortholog2880.D7FKW4
Hectar predicted targeting categorychloroplast
TranscriptId37020
TrackFilteredModels1
ProteinId36698
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|36698gene_16267Tribonema minus UTEX_B_3156 geneContig_196 227680..231059 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|36698Trimin1|36698|CE36697_1051Tribonema minus UTEX_B_3156 polypeptideContig_196 227806..231019 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16267_4exon_16267_4Tribonema minus UTEX_B_3156 exonContig_196 227680..227990 -
exon_16267_3exon_16267_3Tribonema minus UTEX_B_3156 exonContig_196 228991..229311 -
exon_16267_2exon_16267_2Tribonema minus UTEX_B_3156 exonContig_196 230512..230634 -
exon_16267_1exon_16267_1Tribonema minus UTEX_B_3156 exonContig_196 230968..231059 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_16267UTR3_16267Tribonema minus UTEX_B_3156 three_prime_UTRContig_196 227680..227805 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16267CDS_16267Tribonema minus UTEX_B_3156 CDSContig_196 230968..231019 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_16267UTR5_16267Tribonema minus UTEX_B_3156 five_prime_UTRContig_196 231020..231059 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16267 ID=mRNA_16267|Name=jgi.p|Trimin1|36698|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=847bp|location=Sequence derived from alignment at Contig_196:227680..231059- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCAGGCTTGACCGACGCAGGCGGGGGCGGAAGCGGCAATCATGAGGTCAT
TCCTGTACCTGGCTGCCTGCCTGGTGATTGCAGCTGTCTCAGATGCTTTC
ACGGCGTCTGCTTTCCACGGGCAGGCTCTGTGCGCGGCGACTGGCAAGGC
GAGCAGCTCTATCAGCATGAAAATCTTTGACTGGAAGCGGCGTGAGTCGG
ACAGCTTTAACCTCGCGGTCACGGAGCTCTCCCCCGCCACCCTGACCCCC
TCTCCCGGGTCGCGCCACCGCAAGGCGCGCAAGGGCCGCGGCATCAGCGC
GGGGCAGGGCGCCAGCTGCGGCTTCGGCATGAGGGGGCAGCGCTCGCGCA
GCGGGCCCGGTGTGCGCGCGGGGTTTGAGGGGGGTCAGCAGCCCCTTTAC
AGGCGTCTGCCCAAGTTTGTGGGGCGTCCCATGGGGCCCGGGCACACCAA
GAAGGAGTTCCACCTGATCACGCTGGAGGCGCTCAACTCTGCCGCGGAGG
GCGCGACGGTGTCCTTTGAGACGCTCCACGAGCAGGGCACCCTCACCAAG
ACCAGCCTCAGGTGGCACAAGGTGGTGGGCAACGGCGAGCTCAACGTCAG
GGGCCTCACGGTTCAGGCGCACGCATTCACTGGATCTGCCAAGGAGGCCA
TTGAGAATGCGGGCGGCAAGTGCCAGCTGCTCTCCCCCACCACCAACGAG
ATCGTTGACATGTCCGCATAAACAAGTCATGGTGTCAGCCCCTGTCATTG
TGCTGCAAGAGCCTGCTCTGCCTCCCCTGTTTAGATGCTTGAAGGGGGGC
GGATTCGGGGAGCACATGAAGTCATCAATACACGTGCCCTTGTTTAA
back to top

protein sequence of jgi.p|Trimin1|36698

>Trimin1|36698|CE36697_1051 ID=Trimin1|36698|CE36697_1051|Name=jgi.p|Trimin1|36698|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=227bp
MRSFLYLAACLVIAAVSDAFTASAFHGQALCAATGKASSSISMKIFDWKR
RESDSFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQ
RSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNS
AAEGATVSFETLHEQGTLTKTSLRWHKVVGNGELNVRGLTVQAHAFTGSA
KEAIENAGGKCQLLSPTTNEIVDMSA*
back to top

mRNA from alignment at Contig_196:227680..231059-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16267 ID=mRNA_16267|Name=jgi.p|Trimin1|36698|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3380bp|location=Sequence derived from alignment at Contig_196:227680..231059- (Tribonema minus UTEX_B_3156 )
GCAGGCTTGACCGACGCAGGCGGGGGCGGAAGCGGCAATCATGAGGTCAT TCCTGTACCTGGCTGCCTGCCTGGTGATTGCAGCTGTCTCAGGTGTGTAG CAGCGCTCGTTCCTTGCTGTGCCTCAAGTGCAATTCGCTGGCGTGCGGCT GCGACTCAGCCTCGCTTGACAGCCGTTGCACCAGGTGCTGGTGCCACAGC GTTGTTGCGGCTTATTGCTCTGTTTTGCAGTGACCAACTTGCGCAGCAGT GATGAGGTAAAGCTGCGGTGTCCGCGGTTTTGGGGCGTGCGGTTACTCTC TTGAATGCACCACTCGCTGGCGCGGCCTTGTTTCTCTCAACTCATGTGAT TACTGTGTACATCGCTGGTACTGCTTCCCCTCGATGTTGCTTTTAATGCT GCTGCTGCCTGTTTCGTGCTTGTAGATGCTTTCACGGCGTCTGCTTTCCA CGGGCAGGCTCTGTGCGCGGCGACTGGCAAGGCGAGCAGCTCTATCAGCA TGAAAATCTTTGACTGGAAGCGGCGTGAGTCGGACAGCTTTAACCTCGGT GAGCATTCCCACAAGCACGCAAAGCTTGTTGTGTCATCATGGTCACAAAG GGTCATCTGGCTCATGAGTCCAAAGCTTGCTGCGGCTTTGGGGCACGCCA TCGTCATGCAGCATGTTGAACTTGGTCAAGGCGATTCTATTGAAGCATTC TAATTGGCTCAATCAGTGGCAACAAGTCGTCATGAGTCGTGTCTGTGCAC CATCAGCGGGCTACCTGGCTGAATGTAGCTGACTAGCTGAAATTGGCAGT GGCAGACAGCCAAAGTCTTTGGTCAGCACACTGTCCCCCTCAAAATTCCA ATACAGAAGGTATCTCCGGGATGTGCAGAGTCGCCAATATCCATGGCCGT GTAGTGCATTCCAGCACCACATGCACATCTGCCTGCAGTGCAGGAGGTCA GCTCGCCCATTGGTTCATACGCATTGACAGTGAAAAGTAGCACTATGTGC ATTCAATTCAAATGCCGCTTTTAGCCTCAGGTAAACCATACTGATGACTC GCTGCTGTTGTGGCCGTCGTAGAGTTCAAAGGCTCATCAGTCTGCCCAAT GGACAGCACTGTAGCTCAAGCGAACAGATATAGGCGCTTCAACCGCACCT TGTTCCGTAGCGGGTGTATGTGTACTGCGCGTTGACACAACACGCTTCAT TTGGTACCTCGAGAATTGAAGCTTGGTAAAATCTTTGTCGGCCACTGTGC CTTCTTGCTGCTGAGGCATGCAGCCAAGTGTTGATGTATACGTGCATGCT TACCTGCCCCTGCCAGCTAGCATGCACCTGAAGCTGTGAGCCGTTGCACA CTGAGGCGCCTCAGTACAAAAGATGAGATGCTTCACCAGCCATGGCCCAG CTGCGCTCTTTGAGGCCGTGTGTTACACGCATGCACGACTGAGTCAACTC ATTTGTACTGTTTCGACCTGCTGCAGCAGTCCCGGCACTGCAGTATCCCC TTCACGGAATGCAGCTGCTGAGAAGCCCAGTAACGATAAAGCTGGTGCGA TCGTCGCCACCAGCGCGTGTGAACGCCGGCATCGTGATGACCGCACCAGC GCACACGCAGTTGGCACAAACAGGGCGCCAGCTGCCAACTTTAGCCCTAG TCCTAACCCTTCCTAGCCCCATCACATCCCAACCCTAACCCATCACAACA GCCCCTCACCACCCCCACTCTTGCAACCGCCAACCGCGCCACGCACAGCG GTCACGGAGCTCTCCCCCGCCACCCTGACCCCCTCTCCCGGGTCGCGCCA CCGCAAGGCGCGCAAGGGCCGCGGCATCAGCGCGGGGCAGGGCGCCAGCT GCGGCTTCGGCATGAGGGGGCAGCGCTCGCGCAGCGGGCCCGGTGTGCGC GCGGGGTTTGAGGGGGGTCAGCAGCCCCTTTACAGGCGTCTGCCCAAGTT TGTGGGGCGTCCCATGGGGCCCGGGCACACCAAGAAGGAGTTCCACCTGA TCACGCTGGAGGCGCTCAACTCTGCCGCGGAGGGCGCGACGGTGTCCTTT GAGACGCTCCACGAGCAGGGTGAGTCGTTGATGGCGTGGCTGTTGTGTGT GGTTTTGAGGGCATGTGCAGCGACGCCACATGCACACAGCAGCTTGACTC CATCCGATTTTAGCAGCTTGAGACGCTTCACGGGCACGGTGAGTCACGGG ACAGTGCAGGTTCTTGTGTATCGTTCGCTTGGGTGTGCCGAAACATGTCA AATTTCTCACTGGCTGTGTACTCAGTTTGTACTCACCGTTCAGCACAACA TACACAGCGGAGGGCGCGGCAGTTTTGTTTCAGATGCTTGAGCAGGGCGC GTCACTAGTCAATTTAGTTTTATGTATGCTTCATTTGCGTGTGCTTCAGC AAGTCGTCTTCGGTAGTGTACTTAAGTCTGTACGCAGTCAGCAAGACCTA TTGTGGGCGGAGGGTCTGTTGAGGAGCTACAGGATGACATCTGACAATAC CGGAATGGATTGTCGCCAATCAGGTCTCAGAGACACTTTACTTGGCCAAT TATTATTGCATGTCGGGCACATCTCCGGGTGACACTGTTCAGTTAAAGTT CTGTCATAGCAGCTGGGCAAGCATGCGCGTGCAGCTGGTGAGAACAATAT TGGTGCCTGAGTGACAGCGACTTGGCTTGTAATCTCAACATGTCGTGCGG GCATTGCGCTATGCTAGAGTGAGGTGTCATCCAACCGCCCAGCAGCAGGG TCATTCGCCATCTTGAATAGACCAGAGCACTTTGCGGTGTCAACGCACTG CCTACCCGTCGCGCTGCTGCAGCTGCTCCCCGTGTCTCTTGTGTTGAAGT GCACCATGAAGCTCAAATTGCAGATCTCAACTGAGGACTTCTCTGTGAGC CCCACATCATGCGCATCGGTAACGCCAAACGTACGTTATTGCCGCCGACG TATGCGCTGCTGCTGCGACATCATCTGCCCCCTGTTGCCTTCACGCTTTT TGAACTGCGGCACTGCAAAGGGTCTGTTCTTACACAACTCTGCAACTCGC GCTTTTGCTGCCGTCTCAGGCACCCTCACCAAGACCAGCCTCAGGTGGCA CAAGGTGGTGGGCAACGGCGAGCTCAACGTCAGGGGCCTCACGGTTCAGG CGCACGCATTCACTGGATCTGCCAAGGAGGCCATTGAGAATGCGGGCGGC AAGTGCCAGCTGCTCTCCCCCACCACCAACGAGATCGTTGACATGTCCGC ATAAACAAGTCATGGTGTCAGCCCCTGTCATTGTGCTGCAAGAGCCTGCT CTGCCTCCCCTGTTTAGATGCTTGAAGGGGGGCGGATTCGGGGAGCACAT GAAGTCATCAATACACGTGCCCTTGTTTAA
back to top

Coding sequence (CDS) from alignment at Contig_196:227680..231059-

>mRNA_16267 ID=mRNA_16267|Name=jgi.p|Trimin1|36698|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=681bp|location=Sequence derived from alignment at Contig_196:227680..231059- (Tribonema minus UTEX_B_3156 )
ATGAGGTCATTCCTGTACCTGGCTGCCTGCCTGGTGATTGCAGCTGTCTC
AGATGCTTTCACGGCGTCTGCTTTCCACGGGCAGGCTCTGTGCGCGGCGA
CTGGCAAGGCGAGCAGCTCTATCAGCATGAAAATCTTTGACTGGAAGCGG
CGTGAGTCGGACAGCTTTAACCTCGCGGTCACGGAGCTCTCCCCCGCCAC
CCTGACCCCCTCTCCCGGGTCGCGCCACCGCAAGGCGCGCAAGGGCCGCG
GCATCAGCGCGGGGCAGGGCGCCAGCTGCGGCTTCGGCATGAGGGGGCAG
CGCTCGCGCAGCGGGCCCGGTGTGCGCGCGGGGTTTGAGGGGGGTCAGCA
GCCCCTTTACAGGCGTCTGCCCAAGTTTGTGGGGCGTCCCATGGGGCCCG
GGCACACCAAGAAGGAGTTCCACCTGATCACGCTGGAGGCGCTCAACTCT
GCCGCGGAGGGCGCGACGGTGTCCTTTGAGACGCTCCACGAGCAGGGCAC
CCTCACCAAGACCAGCCTCAGGTGGCACAAGGTGGTGGGCAACGGCGAGC
TCAACGTCAGGGGCCTCACGGTTCAGGCGCACGCATTCACTGGATCTGCC
AAGGAGGCCATTGAGAATGCGGGCGGCAAGTGCCAGCTGCTCTCCCCCAC
CACCAACGAGATCGTTGACATGTCCGCATAA
back to top