mRNA_16255 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|132884
Unique NamemRNA_16255
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|132884 vs. uniprot
Match: A0A835ZAL2_9STRA (Bromodomain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL2_9STRA)

HSP 1 Score: 181 bits (460), Expect = 6.950e-58
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1
Query:    1 RRRLGAALEALSKERFAASFAAPVDLAAVYGYGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQRLASALAEV 285
            RRRLGAALEALSKERFAASFAAPVDLAAVYGYGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQRLASALAEV
Sbjct:    1 RRRLGAALEALSKERFAASFAAPVDLAAVYGYGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQRLASALAEV 95          
BLAST of jgi.p|Trimin1|132884 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.600e-9
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 1
Query:   10 LGAALEALSKERFAASFAAPVDLAAVYGYGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQRLASALAE 282
            L A +  +++   AA FA PVD+A    Y   V +PMDL LILRRLE +YY    AL  DC+L+  NC K+N   S I + +  ++  L +
Sbjct: 1523 LAAKVREVAESPDAALFAEPVDVA---DYHTIVPVPMDLGLILRRLEKDYYCSVEALEFDCNLVYDNCTKYNEPGSDIVKLAFTVSDQLVQ 1610          
BLAST of jgi.p|Trimin1|132884 vs. uniprot
Match: D8LEP1_ECTSI (WD-repeat protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP1_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.170e-9
Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = 1
Query:   10 LGAALEALSKERFAASFAAPVDLAAVYGYGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQRLASALAE 282
            L A +  +++   AA FA PVD   V  Y   V +PMDL LILRRLE +YY    AL  DC+L+  NC K+N   S I + +  ++  L +
Sbjct: 1564 LAAKVREVAESPDAALFAEPVD---VVDYHTIVPVPMDLGLILRRLEKDYYCSVEALEFDCNLVYDNCTKYNEPGSDIVKLAFTVSDQLVQ 1651          
BLAST of jgi.p|Trimin1|132884 vs. uniprot
Match: A0A6F9D7L9_9ASCI (Bromodomain and WD repeat-containing protein 3 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9D7L9_9ASCI)

HSP 1 Score: 58.2 bits (139), Expect = 9.130e-8
Identity = 34/90 (37.78%), Postives = 47/90 (52.22%), Query Frame = 1
Query:    7 RLGAALEALSKERFAASFAAPVDLAAVYGYGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQRLASAL 276
            R+  A+E L   +    F+ PVD      Y   V  P+DL+LILRRL+  +YR   +L  D  L+  N L FN  DS I + +Q L + L
Sbjct: 1216 RIACAIETLLNFKMFFQFSGPVDFKIYPTYVLAVPYPIDLSLILRRLQSRFYRRKASLVWDIELLSKNALAFNKSDSKIVKTAQFLENRL 1305          
BLAST of jgi.p|Trimin1|132884 vs. uniprot
Match: A0A6G0LMW6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0LMW6_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.820e-6
Identity = 30/77 (38.96%), Postives = 41/77 (53.25%), Query Frame = 1
Query:   46 FAASFAAPVDLAAVYGYGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQRLASAL 276
            F+  F  PVD      Y  +VA P+DL  I RRL   YYR   A   D  L+ +NC  +N+  S I++ S+ L SA+
Sbjct: 1169 FSRDFMCPVDEETFMDYPYSVANPIDLTKIQRRLRLGYYRQVEAFLADVKLLRINCETYNIPSSPISQNSRNLYSAV 1245          
BLAST of jgi.p|Trimin1|132884 vs. uniprot
Match: H3GMX0_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GMX0_PHYRM)

HSP 1 Score: 53.5 bits (127), Expect = 3.600e-6
Identity = 28/70 (40.00%), Postives = 38/70 (54.29%), Query Frame = 1
Query:   67 PVDLAAVYGYGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQRLASAL 276
            PVD      Y  ++A P+DL  I RRL   YYR   A   D  LI +NC  +N+  S I++ S+ L SA+
Sbjct:    3 PVDEETFIDYPISIANPIDLTKIQRRLRLGYYRQVEAFLSDVKLISINCETYNIPSSPISQNSRNLLSAI 72          
BLAST of jgi.p|Trimin1|132884 vs. uniprot
Match: A0A6G0XRZ7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRZ7_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.860e-6
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1
Query:   94 YGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQ 258
            Y  T+A PMDL+LI RR+E  YYR   AL  D  L++ NC  +N+E S IA+ ++
Sbjct: 1445 YHITIANPMDLSLICRRVESGYYRQVDALLADVKLMVRNCETYNVESSLIAQNAR 1499          
BLAST of jgi.p|Trimin1|132884 vs. uniprot
Match: A0A6A3MDY0_9STRA (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MDY0_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 5.300e-6
Identity = 30/77 (38.96%), Postives = 41/77 (53.25%), Query Frame = 1
Query:   46 FAASFAAPVDLAAVYGYGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQRLASAL 276
            F+  F  PVD      Y  +VA P+DL  I RRL   YYR   A   D  L+ +NC  +N+  S I++ S+ L SA+
Sbjct: 1802 FSRDFMYPVDEETFMDYPYSVANPIDLTKIQRRLRLGYYRQVEAFLADVKLLRINCETYNIPSSPISQNSRNLYSAV 1878          
BLAST of jgi.p|Trimin1|132884 vs. uniprot
Match: G4YIG9_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YIG9_PHYSP)

HSP 1 Score: 52.0 bits (123), Expect = 1.350e-5
Identity = 29/77 (37.66%), Postives = 41/77 (53.25%), Query Frame = 1
Query:   46 FAASFAAPVDLAAVYGYGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQRLASAL 276
            F+  F  PVD      Y  +VA P+DL  I RRL   YYR   A   D  L+ +NC  +N+  S I++ S+ L +A+
Sbjct: 1432 FSRDFMYPVDEETFMDYPYSVANPIDLTKIQRRLRLGYYRQVEAFLADVKLLRINCETYNIPSSPISQNSRNLYAAV 1508          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132884 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A835ZAL2_9STRA6.950e-58100.00Bromodomain-containing protein (Fragment) n=1 Tax=... [more]
A0A6H5KTA2_9PHAE1.600e-940.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEP1_ECTSI2.170e-940.66WD-repeat protein, putative n=1 Tax=Ectocarpus sil... [more]
A0A6F9D7L9_9ASCI9.130e-837.78Bromodomain and WD repeat-containing protein 3 n=1... [more]
A0A6G0LMW6_9STRA2.820e-638.96Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
H3GMX0_PHYRM3.600e-640.00Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6G0XRZ7_9STRA3.860e-647.27Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A3MDY0_9STRA5.300e-638.96Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
G4YIG9_PHYSP1.350e-537.66Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_196contigContig_196:167816..168100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|132884|gw1.196.19.1
BRITEko00000,ko00001,ko00002,ko03032,ko04121
KEGG ModuleM00284
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG koko:K02606,ko:K11797,ko:K11798
GOsGO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007346,GO:0008104,GO:0008150,GO:0008284,GO:0008286,GO:0008360,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010799,GO:0010800,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033365,GO:0034097,GO:0034504,GO:0034613,GO:0038111,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042393,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045840,GO:0045893,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098760,GO:0098761,GO:0140030,GO:0140033,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
Descriptionchromatin organization
COG categoryP
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2319@1|root,COG5141@1|root,KOG0644@2759|Eukaryota,KOG0955@2759|Eukaryota
Evalue3.56e-10
Seed ortholog2880.D8LEP1
Hectar predicted targeting categoryother localisation
TranscriptId133206
TrackFilteredModels1
ProteinId132884
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132884gene_16255Tribonema minus UTEX_B_3156 geneContig_196 167816..168100 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16255_1exon_16255_1Tribonema minus UTEX_B_3156 exonContig_196 167816..168100 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16255CDS_16255Tribonema minus UTEX_B_3156 CDSContig_196 167816..168100 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132884Trimin1|132884|gw1.196.19.1Tribonema minus UTEX_B_3156 polypeptideContig_196 167816..168100 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16255 ID=mRNA_16255|Name=jgi.p|Trimin1|132884|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=285bp|location=Sequence derived from alignment at Contig_196:167816..168100- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGGCGCCGCTTAGGCGCGGCGCTGGAGGCACTCTCCAAGGAGCGCTTCGC
GGCGTCCTTCGCGGCCCCCGTGGATCTGGCCGCGGTGTACGGTTACGGCG
CAACTGTCGCGCTGCCCATGGACCTCGCGCTCATCCTGCGCCGCTTGGAG
GGGAACTACTACCGCGGCGCGCGCGCGCTCGCGCACGACTGCCATCTCAT
CATCGTCAACTGCCTCAAGTTCAACCTTGAAGATAGCGGCATCGCGCGGC
AGAGCCAGCGCCTCGCTTCAGCGCTCGCCGAAGTC
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protein sequence of jgi.p|Trimin1|132884

>Trimin1|132884|gw1.196.19.1 ID=Trimin1|132884|gw1.196.19.1|Name=jgi.p|Trimin1|132884|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=95bp
RRRLGAALEALSKERFAASFAAPVDLAAVYGYGATVALPMDLALILRRLE
GNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQRLASALAEV
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mRNA from alignment at Contig_196:167816..168100-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16255 ID=mRNA_16255|Name=jgi.p|Trimin1|132884|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=285bp|location=Sequence derived from alignment at Contig_196:167816..168100- (Tribonema minus UTEX_B_3156 )
CGGCGCCGCTTAGGCGCGGCGCTGGAGGCACTCTCCAAGGAGCGCTTCGC GGCGTCCTTCGCGGCCCCCGTGGATCTGGCCGCGGTGTACGGTTACGGCG CAACTGTCGCGCTGCCCATGGACCTCGCGCTCATCCTGCGCCGCTTGGAG GGGAACTACTACCGCGGCGCGCGCGCGCTCGCGCACGACTGCCATCTCAT CATCGTCAACTGCCTCAAGTTCAACCTTGAAGATAGCGGCATCGCGCGGC AGAGCCAGCGCCTCGCTTCAGCGCTCGCCGAAGTC
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Coding sequence (CDS) from alignment at Contig_196:167816..168100-

>mRNA_16255 ID=mRNA_16255|Name=jgi.p|Trimin1|132884|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=285bp|location=Sequence derived from alignment at Contig_196:167816..168100- (Tribonema minus UTEX_B_3156 )
CGGCGCCGCTTAGGCGCGGCGCTGGAGGCACTCTCCAAGGAGCGCTTCGC
GGCGTCCTTCGCGGCCCCCGTGGATCTGGCCGCGGTGTACGGTTACGGCG
CAACTGTCGCGCTGCCCATGGACCTCGCGCTCATCCTGCGCCGCTTGGAG
GGGAACTACTACCGCGGCGCGCGCGCGCTCGCGCACGACTGCCATCTCAT
CATCGTCAACTGCCTCAAGTTCAACCTTGAAGATAGCGGCATCGCGCGGC
AGAGCCAGCGCCTCGCTTCAGCGCTCGCCGAAGTC
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