mRNA_16115 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|353389 vs. uniprot
Match: A0A835ZGC1_9STRA (S1 motif domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC1_9STRA) HSP 1 Score: 789 bits (2037), Expect = 1.260e-285 Identity = 465/465 (100.00%), Postives = 465/465 (100.00%), Query Frame = 1
Query: 1 MQQQAAMTAMEAELPQGDGARTGHGSKASAQLAAGTLAGGMAGYSQSSLVSLAEEQRPQPSTEPAAGGDNGNVQARAVDGGAGAKEALTVHDAGGCSDRTGDDCSIHSLAVDADGDTESGALLVDSGGEHEADNDAGDACXXXXXXXXXXNTTYNCGNSGEHGPLIMLHTLETGQKLSGTVVGMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQRVIRVGQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVGDKFVVTIISNTDGRIELGYVRKVEPALQVNAGAAASRAQEMHAAXXXXXXXXXXXXXXXXXXXXXXDEYPQDADEDXXXXXXXXXXXXEGDGEFDPDEIDYSLFDDY 1395
MQQQAAMTAMEAELPQGDGARTGHGSKASAQLAAGTLAGGMAGYSQSSLVSLAEEQRPQPSTEPAAGGDNGNVQARAVDGGAGAKEALTVHDAGGCSDRTGDDCSIHSLAVDADGDTESGALLVDSGGEHEADNDAGDACXXXXXXXXXXNTTYNCGNSGEHGPLIMLHTLETGQKLSGTVVGMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQRVIRVGQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVGDKFVVTIISNTDGRIELGYVRKVEPALQVNAGAAASRAQEMHAAXXXXXXXXXXXXXXXXXXXXXXDEYPQDADEDXXXXXXXXXXXXEGDGEFDPDEIDYSLFDDY
Sbjct: 1 MQQQAAMTAMEAELPQGDGARTGHGSKASAQLAAGTLAGGMAGYSQSSLVSLAEEQRPQPSTEPAAGGDNGNVQARAVDGGAGAKEALTVHDAGGCSDRTGDDCSIHSLAVDADGDTESGALLVDSGGEHEADNDAGDACXXXXXXXXXXNTTYNCGNSGEHGPLIMLHTLETGQKLSGTVVGMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQRVIRVGQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVGDKFVVTIISNTDGRIELGYVRKVEPALQVNAGAAASRAQEMHAAXXXXXXXXXXXXXXXXXXXXXXDEYPQDADEDXXXXXXXXXXXXEGDGEFDPDEIDYSLFDDY 465
BLAST of jgi.p|Trimin1|353389 vs. uniprot
Match: A0A0M0JI85_9EUKA (S1 motif domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JI85_9EUKA) HSP 1 Score: 65.5 bits (158), Expect = 6.210e-8 Identity = 55/180 (30.56%), Postives = 83/180 (46.11%), Query Frame = 1
Query: 502 LHTLETGQKLSGTVVGMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQRVIRVGQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDL--EPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTK 1035
L L G +L+ TV+ + P A V GV R A ++AP V+ L L G T LV G+ + V + P GR LT P + S+ + AR+R + R + +L +PG ER+G V +V YG+++ +GA+RP L+H+SK+ G K
Sbjct: 143 LEDLSIGTQLNATVLSVHPFGAIVEVGVTRA----GAGGTRAP------VDALLPADQLPVGATAATFLVP----------GRTIGVRVLRPSPGSGRLLLTAVPVASTASLETMLEQRALARRRADR-RPSLKELAAQPGIEREGVVVKVASYGVVVNVGARRPGLVHISKLQSGNGRK 301
BLAST of jgi.p|Trimin1|353389 vs. uniprot
Match: A0A7S4I5E6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I5E6_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 4.900e-7 Identity = 67/234 (28.63%), Postives = 98/234 (41.88%), Query Frame = 1
Query: 496 IMLHTLETGQKLSGTVV-------GMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQ-RVIRV-GQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVGDKFVVTIISNTDGRIELGYVR--KVEPALQVN 1164
+ L LE G KL G V G F CGVGR +A + +VNG LR L + K++ T+ RV R+ G+ V+ YV K P G F ++ E +AA +E+ R L+ G+E GTV RV PYG+++++GA R LLH+ ++ K + I +G IE G R K+ A+ +N
Sbjct: 106 VRLDELELGHKLEGVKVEGSDLLEGKTGPKVFFECGVGRIDSA----------GRWHIVNGMLR---------LGKRGAKKSVTRKRVDRLTGKVVDLYVSKIRPDNGAFEVSTSLEQVQEQLAAEKKESAP-------KRVPVSSLKAGQEVVGTVIRVEPYGVLVDVGANRHGLLHIRRVR--------------------KLMNKFIDGQEGLIEAGLERGAKIRVAVMIN 293
BLAST of jgi.p|Trimin1|353389 vs. uniprot
Match: A0A7S4I5V8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I5V8_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 4.950e-6 Identity = 59/209 (28.23%), Postives = 90/209 (43.06%), Query Frame = 1
Query: 550 MLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQ-RVIRV-GQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVGDKFVVTIISNTDGRIELGYVR--KVEPALQVN 1164
+ P F CGVGR +A + +VNG LR L + K++ T+ RV R+ G+ V+ YV K P G F ++ E +AA +E+ R L+ G+E GTV RV PYG+++++GA R LLH+ ++ K + I +G IE G R K+ A+ +N
Sbjct: 13 LAPSPVFFECGVGRIDSA----------GRWHIVNGMLR---------LGKRGAKKSVTRKRVDRLTGKVVDLYVSKIRPDNGAFEVSTSLEQVQEQLAAEKKESAP-------KRVPVSSLKAGQEVVGTVIRVEPYGVLVDVGANRHGLLHIRRVR--------------------KLMNKFIDGQEGLIEAGLERGAKIRVAVMIN 175
BLAST of jgi.p|Trimin1|353389 vs. uniprot
Match: A0A7S2JUH8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JUH8_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 6.690e-6 Identity = 63/243 (25.93%), Postives = 107/243 (44.03%), Query Frame = 1
Query: 478 GEHGPLIMLHTLETGQKLSGTVV------GMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQRVIR---VGQEVEAYVKKAWPSEGRFCLTLD-PCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVGD-------KFVVTIISNTDGRIELGYVRKVEPAL 1155
G P I + L+ GQ+L T + G F CGVG Q + G K +V+NG LR + +++ +VK+ ++ + V + YV + + G+F ++ + P + E + + L+ GKE GTV +V PYG+ +++GA R LLH+S +AE G + D + +G+ K V + SN + R+ L + +KV+ L
Sbjct: 71 GNWKPRIDIRDLKIGQRLFCTKLRNELLNGKTGPKLFYECGVG---------QMDSNG-KWQVINGMLR----LGKAGMKSSVVKKKKSRLKAKADDVSGLIPLYVSRVHIANGKFEVSTEIPDMDKEQ----------------REKIPASSLKHGKELIGTVKKVKPYGVFVDVGASRNGLLHISTVAELFGCYV----DKEKGLIGECGLERGAKIQVAVQSNVNKRLALDFTQKVKDEL 279
BLAST of jgi.p|Trimin1|353389 vs. uniprot
Match: A0A7S0FP74_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FP74_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 1.180e-5 Identity = 30/80 (37.50%), Postives = 44/80 (55.00%), Query Frame = 1
Query: 901 GDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVGDKFVVTIISNTDGRIELGYVRK 1140
GD++ GK G V V PYG ++IGAK+ ALLH+S+I + T ++ D+ + GD V II DG + + K
Sbjct: 86 GDIQVGKAYDGKVANVTPYGCFVDIGAKKNALLHISRITQEKVTNIR-----DYVSEGDWLTVHIIGKDDGGLACSMLDK 160
BLAST of jgi.p|Trimin1|353389 vs. uniprot
Match: A0A7S2RMK8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RMK8_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 1.700e-5 Identity = 56/219 (25.57%), Postives = 94/219 (42.92%), Query Frame = 1
Query: 502 LHTLETGQKLSGTVVGMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQRVIRVGQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVG----DKFVVTIISNTDGRIELGYVRKVE 1146
L+ +TG KL F CG+GR + K ++V+G LR D + ++ L K+A + + V YV K GR +T+DP V ++ K + K+ + L G E +GTV RV+PYG+ +++GA R LL + +A+ G ++ + G + V + SN R+ L + + V+
Sbjct: 52 LYDAKTGPKL------------FFECGIGRLDVS----------GKWQMVSGMLRLRD-IWNYKKKSVLRKKAN--KAFDSNRVVTLYVSKVQTDNGRLEVTIDPDV---------KKKNKKNNKGKKKMISASSLHEGYELEGTVVRVHPYGVFVDVGANRLGLLPIQHVAQLYGRYIR--KERGLIEAGLETHARIRVAVSSNQRKRLTLDFTKDVK 234
BLAST of jgi.p|Trimin1|353389 vs. uniprot
Match: A0A835YW62_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW62_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 3.180e-5 Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 1
Query: 208 NGNVQARAVDGGAGAKEALTVHDAGGCSDRTGDDCSIHSLAVDADGDTESGALLVDSGGEHEADNDAGDAC 420
N N + AV GG G E TV DAGG + +GDD SIHSL VDADG++ S + +S E EA++DAG AC
Sbjct: 383 NSNARTGAVKGGGG--ETFTVSDAGGGDNCSGDDYSIHSLDVDADGNSVSEEVAENSCQESEANDDAGGAC 451
BLAST of jgi.p|Trimin1|353389 vs. uniprot
Match: A0A7S1ZKX6_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZKX6_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 9.880e-5 Identity = 62/224 (27.68%), Postives = 94/224 (41.96%), Query Frame = 1
Query: 511 LETGQKLSGTVV-------GMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGT-QRVIRV-GQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAV---GDKFVVTIISNTDGRIELGYVRKVE 1146
LE GQKL G + F CGVGR + G + K+VNG LR + T K++ T +R+ R+ G+ +E YV K G+F + C+ E A K + L+ G E GTV R+ PYG+ +++GA R LLH+ +A+ K G+ A G + V ++ N R+ L + V+
Sbjct: 115 LEIGQKLYGLKIHGVDLLEAKTGPKIFFECGVGR---------TNKKG-EWKIVNGMLR---------IGTPWSKKSVTAKRIARLSGKMLELYVSKIRVDNGQF----EVCIKQEDALEEASSGMK-------KMVSASTLQVGDELIGTVVRIEPYGVFVDVGANRKGLLHIQTVADLY-KKFIDGEKGLIEAGLERGARIRVAVLKNEKKRLALDFTADVK 307 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353389 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16115 ID=mRNA_16115|Name=jgi.p|Trimin1|353389|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1460bp|location=Sequence derived from alignment at Contig_160:222502..230709+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCAGCAGCAGGCCGCGATGACTGCGATGGAAGCTGAACTGCCACAAGGback to top protein sequence of jgi.p|Trimin1|353389 >Trimin1|353389|estExt_Genemark1.C_Ctg_1600026 ID=Trimin1|353389|estExt_Genemark1.C_Ctg_1600026|Name=jgi.p|Trimin1|353389|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=466bp MQQQAAMTAMEAELPQGDGARTGHGSKASAQLAAGTLAGGMAGYSQSSLVback to top mRNA from alignment at Contig_160:222502..230709+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16115 ID=mRNA_16115|Name=jgi.p|Trimin1|353389|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=8208bp|location=Sequence derived from alignment at Contig_160:222502..230709+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_160:222502..230709+ >mRNA_16115 ID=mRNA_16115|Name=jgi.p|Trimin1|353389|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1398bp|location=Sequence derived from alignment at Contig_160:222502..230709+ (Tribonema minus UTEX_B_3156 )back to top |