Trimin1|353389|estExt_Genemark1.C_Ctg_1600026 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353389
Unique NameTrimin1|353389|estExt_Genemark1.C_Ctg_1600026
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length466
Homology
BLAST of jgi.p|Trimin1|353389 vs. uniprot
Match: A0A835ZGC1_9STRA (S1 motif domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC1_9STRA)

HSP 1 Score: 787 bits (2033), Expect = 2.330e-285
Identity = 465/465 (100.00%), Postives = 465/465 (100.00%), Query Frame = 0
Query:    1 MQQQAAMTAMEAELPQGDGARTGHGSKASAQLAAGTLAGGMAGYSQSSLVSLAEEQRPQPSTEPAAGGDNGNVQARAVDGGAGAKEALTVHDAGGCSDRTGDDCSIHSLAVDADGDTESGALLVDSGGEHEADNDAGDACXXXXXXXXXXNTTYNCGNSGEHGPLIMLHTLETGQKLSGTVVGMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQRVIRVGQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVGDKFVVTIISNTDGRIELGYVRKVEPALQVNAGAAASRAQEMHAAXXXXXXXXXXXXXXXXXXXXXXDEYPQDADEDXXXXXXXXXXXXEGDGEFDPDEIDYSLFDDY 465
            MQQQAAMTAMEAELPQGDGARTGHGSKASAQLAAGTLAGGMAGYSQSSLVSLAEEQRPQPSTEPAAGGDNGNVQARAVDGGAGAKEALTVHDAGGCSDRTGDDCSIHSLAVDADGDTESGALLVDSGGEHEADNDAGDACXXXXXXXXXXNTTYNCGNSGEHGPLIMLHTLETGQKLSGTVVGMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQRVIRVGQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVGDKFVVTIISNTDGRIELGYVRKVEPALQVNAGAAASRAQEMHAAXXXXXXXXXXXXXXXXXXXXXXDEYPQDADEDXXXXXXXXXXXXEGDGEFDPDEIDYSLFDDY
Sbjct:    1 MQQQAAMTAMEAELPQGDGARTGHGSKASAQLAAGTLAGGMAGYSQSSLVSLAEEQRPQPSTEPAAGGDNGNVQARAVDGGAGAKEALTVHDAGGCSDRTGDDCSIHSLAVDADGDTESGALLVDSGGEHEADNDAGDACXXXXXXXXXXNTTYNCGNSGEHGPLIMLHTLETGQKLSGTVVGMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQRVIRVGQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVGDKFVVTIISNTDGRIELGYVRKVEPALQVNAGAAASRAQEMHAAXXXXXXXXXXXXXXXXXXXXXXDEYPQDADEDXXXXXXXXXXXXEGDGEFDPDEIDYSLFDDY 465          
BLAST of jgi.p|Trimin1|353389 vs. uniprot
Match: A0A0M0JI85_9EUKA (S1 motif domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JI85_9EUKA)

HSP 1 Score: 65.5 bits (158), Expect = 5.760e-8
Identity = 55/180 (30.56%), Postives = 83/180 (46.11%), Query Frame = 0
Query:  168 LHTLETGQKLSGTVVGMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQRVIRVGQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDL--EPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTK 345
            L  L  G +L+ TV+ + P  A V  GV R      A  ++AP      V+  L    L  G    T LV           G+ +   V +  P  GR  LT  P  +  S+     +   AR+R  + R +  +L  +PG ER+G V +V  YG+++ +GA+RP L+H+SK+    G K
Sbjct:  143 LEDLSIGTQLNATVLSVHPFGAIVEVGVTRA----GAGGTRAP------VDALLPADQLPVGATAATFLVP----------GRTIGVRVLRPSPGSGRLLLTAVPVASTASLETMLEQRALARRRADR-RPSLKELAAQPGIEREGVVVKVASYGVVVNVGARRPGLVHISKLQSGNGRK 301          
BLAST of jgi.p|Trimin1|353389 vs. uniprot
Match: A0A835ZDU8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDU8_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 9.080e-8
Identity = 62/155 (40.00%), Postives = 75/155 (48.39%), Query Frame = 0
Query:    8 TAMEAELPQGDGARTGHGSKASAQLAAGTLAGGMAGYSQSSLVSLAEEQRPQPSTEPAAGGDNGNVQARAVDGGAGAKEALTVHDAGGCSDRTGDDCSIHSLAVDADGDTESGALLVDSGGEHEADNDAGDACXXXXXXXXXXNTTYNCGNSGEH 162
            T MEAE  Q DG +T HGS+ +A    GT  GG+AG SQSS  SLA                  +  A AV+   GA EA T HDAGG    +GD+CSI SL VDA   + S  L  DS  E E +   G A           ++T  C +S EH
Sbjct:   94 TTMEAEPQQLDGVQTVHGSEVNAHHRTGTPDGGVAGASQSSCASLAXXXXXXXXXXXXXXXXXXDAHATAVN--KGAFEASTAHDAGGDDICSGDECSIQSLDVDAGIGSVSHGLFEDSCDESELNIATGGA---QNNGMDSTDSTNVCSDSVEH 243          
BLAST of jgi.p|Trimin1|353389 vs. uniprot
Match: A0A7S4I5E6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I5E6_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.520e-7
Identity = 67/234 (28.63%), Postives = 98/234 (41.88%), Query Frame = 0
Query:  166 IMLHTLETGQKLSGTVV-------GMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQ-RVIRV-GQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVGDKFVVTIISNTDGRIELGYVR--KVEPALQVN 388
            + L  LE G KL G  V       G      F  CGVGR  +A           +  +VNG LR         L  +  K++ T+ RV R+ G+ V+ YV K  P  G F ++       E +AA  +E+          R     L+ G+E  GTV RV PYG+++++GA R  LLH+ ++                     K +   I   +G IE G  R  K+  A+ +N
Sbjct:  106 VRLDELELGHKLEGVKVEGSDLLEGKTGPKVFFECGVGRIDSA----------GRWHIVNGMLR---------LGKRGAKKSVTRKRVDRLTGKVVDLYVSKIRPDNGAFEVSTSLEQVQEQLAAEKKESAP-------KRVPVSSLKAGQEVVGTVIRVEPYGVLVDVGANRHGLLHIRRVR--------------------KLMNKFIDGQEGLIEAGLERGAKIRVAVMIN 293          
BLAST of jgi.p|Trimin1|353389 vs. uniprot
Match: A0A7S4I5V8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I5V8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.620e-6
Identity = 59/209 (28.23%), Postives = 90/209 (43.06%), Query Frame = 0
Query:  184 MLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQ-RVIRV-GQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVGDKFVVTIISNTDGRIELGYVR--KVEPALQVN 388
            + P   F  CGVGR  +A           +  +VNG LR         L  +  K++ T+ RV R+ G+ V+ YV K  P  G F ++       E +AA  +E+          R     L+ G+E  GTV RV PYG+++++GA R  LLH+ ++                     K +   I   +G IE G  R  K+  A+ +N
Sbjct:   13 LAPSPVFFECGVGRIDSA----------GRWHIVNGMLR---------LGKRGAKKSVTRKRVDRLTGKVVDLYVSKIRPDNGAFEVSTSLEQVQEQLAAEKKESAP-------KRVPVSSLKAGQEVVGTVIRVEPYGVLVDVGANRHGLLHIRRVR--------------------KLMNKFIDGQEGLIEAGLERGAKIRVAVMIN 175          
BLAST of jgi.p|Trimin1|353389 vs. uniprot
Match: A0A7S2JUH8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JUH8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 6.220e-6
Identity = 63/243 (25.93%), Postives = 107/243 (44.03%), Query Frame = 0
Query:  160 GEHGPLIMLHTLETGQKLSGTVV------GMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQRVIR---VGQEVEAYVKKAWPSEGRFCLTLD-PCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVGD-------KFVVTIISNTDGRIELGYVRKVEPAL 385
            G   P I +  L+ GQ+L  T +      G      F  CGVG         Q  + G K +V+NG LR    +    +++ +VK+  ++   +   V   +  YV +   + G+F ++ + P +  E                 + +     L+ GKE  GTV +V PYG+ +++GA R  LLH+S +AE  G  +    D +   +G+       K  V + SN + R+ L + +KV+  L
Sbjct:   71 GNWKPRIDIRDLKIGQRLFCTKLRNELLNGKTGPKLFYECGVG---------QMDSNG-KWQVINGMLR----LGKAGMKSSVVKKKKSRLKAKADDVSGLIPLYVSRVHIANGKFEVSTEIPDMDKEQ----------------REKIPASSLKHGKELIGTVKKVKPYGVFVDVGASRNGLLHISTVAELFGCYV----DKEKGLIGECGLERGAKIQVAVQSNVNKRLALDFTQKVKDEL 279          
BLAST of jgi.p|Trimin1|353389 vs. uniprot
Match: A0A7S0FP74_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FP74_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.110e-5
Identity = 30/80 (37.50%), Postives = 44/80 (55.00%), Query Frame = 0
Query:  301 GDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVGDKFVVTIISNTDGRIELGYVRK 380
            GD++ GK   G V  V PYG  ++IGAK+ ALLH+S+I +   T ++     D+ + GD   V II   DG +    + K
Sbjct:   86 GDIQVGKAYDGKVANVTPYGCFVDIGAKKNALLHISRITQEKVTNIR-----DYVSEGDWLTVHIIGKDDGGLACSMLDK 160          
BLAST of jgi.p|Trimin1|353389 vs. uniprot
Match: A0A7S2RMK8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RMK8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.590e-5
Identity = 56/219 (25.57%), Postives = 94/219 (42.92%), Query Frame = 0
Query:  168 LHTLETGQKLSGTVVGMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQRVIRVGQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVG----DKFVVTIISNTDGRIELGYVRKVE 382
            L+  +TG KL            F  CG+GR   +           K ++V+G LR  D +     ++ L K+A   +     + V  YV K     GR  +T+DP V         ++  K   + K+   +   L  G E +GTV RV+PYG+ +++GA R  LL +  +A+  G  ++   +      G     +  V + SN   R+ L + + V+
Sbjct:   52 LYDAKTGPKL------------FFECGIGRLDVS----------GKWQMVSGMLRLRD-IWNYKKKSVLRKKAN--KAFDSNRVVTLYVSKVQTDNGRLEVTIDPDV---------KKKNKKNNKGKKKMISASSLHEGYELEGTVVRVHPYGVFVDVGANRLGLLPIQHVAQLYGRYIR--KERGLIEAGLETHARIRVAVSSNQRKRLTLDFTKDVK 234          
BLAST of jgi.p|Trimin1|353389 vs. uniprot
Match: A0A835YW62_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW62_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.940e-5
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 0
Query:   70 NGNVQARAVDGGAGAKEALTVHDAGGCSDRTGDDCSIHSLAVDADGDTESGALLVDSGGEHEADNDAGDAC 140
            N N +  AV GG G  E  TV DAGG  + +GDD SIHSL VDADG++ S  +  +S  E EA++DAG AC
Sbjct:  383 NSNARTGAVKGGGG--ETFTVSDAGGGDNCSGDDYSIHSLDVDADGNSVSEEVAENSCQESEANDDAGGAC 451          
BLAST of jgi.p|Trimin1|353389 vs. uniprot
Match: A0A7S1ZKX6_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZKX6_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 9.200e-5
Identity = 62/224 (27.68%), Postives = 94/224 (41.96%), Query Frame = 0
Query:  171 LETGQKLSGTVV-------GMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGT-QRVIRV-GQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAV---GDKFVVTIISNTDGRIELGYVRKVE 382
            LE GQKL G  +              F  CGVGR         +   G + K+VNG LR         + T   K++ T +R+ R+ G+ +E YV K     G+F    + C+  E     A    K          +   L+ G E  GTV R+ PYG+ +++GA R  LLH+  +A+    K   G+     A    G +  V ++ N   R+ L +   V+
Sbjct:  115 LEIGQKLYGLKIHGVDLLEAKTGPKIFFECGVGR---------TNKKG-EWKIVNGMLR---------IGTPWSKKSVTAKRIARLSGKMLELYVSKIRVDNGQF----EVCIKQEDALEEASSGMK-------KMVSASTLQVGDELIGTVVRIEPYGVFVDVGANRKGLLHIQTVADLY-KKFIDGEKGLIEAGLERGARIRVAVLKNEKKRLALDFTADVK 307          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353389 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A835ZGC1_9STRA2.330e-285100.00S1 motif domain-containing protein n=1 Tax=Tribone... [more]
A0A0M0JI85_9EUKA5.760e-830.56S1 motif domain-containing protein n=1 Tax=Chrysoc... [more]
A0A835ZDU8_9STRA9.080e-840.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4I5E6_9STRA4.520e-728.63Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4I5V8_9STRA4.620e-628.23Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2JUH8_9STRA6.220e-625.93Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S0FP74_9STRA1.110e-537.50Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2RMK8_9STRA1.590e-525.57Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A835YW62_9STRA2.940e-552.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1ZKX6_9STRA9.200e-527.68Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 172..271
e-value: 38.0
score: 2.2
coord: 304..378
e-value: 2.9E-6
score: 36.8
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 287..380
e-value: 1.1E-8
score: 36.8
coord: 165..272
e-value: 2.0E-5
score: 26.3
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 290..377
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 417..465
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 426..465
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..68
IPR003029S1 domainPROSITEPS50126S1coord: 306..378
score: 10.639221

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_160contigContig_160:222502..230647 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353389mRNA_16115Tribonema minus UTEX_B_3156 mRNAContig_160 222502..230709 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353389|estExt_Genemark1.C_Ctg_1600026 ID=Trimin1|353389|estExt_Genemark1.C_Ctg_1600026|Name=jgi.p|Trimin1|353389|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=466bp
MQQQAAMTAMEAELPQGDGARTGHGSKASAQLAAGTLAGGMAGYSQSSLV
SLAEEQRPQPSTEPAAGGDNGNVQARAVDGGAGAKEALTVHDAGGCSDRT
GDDCSIHSLAVDADGDTESGALLVDSGGEHEADNDAGDACNDCNDCLGSI
NTTYNCGNSGEHGPLIMLHTLETGQKLSGTVVGMLPHAAFVSCGVGREIA
AEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQRVIRVGQ
EVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAP
GDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGD
DNDFAAVGDKFVVTIISNTDGRIELGYVRKVEPALQVNAGAAASRAQEMH
AAAATASAVVGTVASNGAAASTTDDEYPQDADEDDDEYQDEVDEDDEGDG
EFDPDEIDYSLFDDY*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022967S1_dom
IPR012340NA-bd_OB-fold
IPR003029S1_domain