mRNA_16074 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|131257 vs. uniprot
Match: A0A836CIX9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIX9_9STRA) HSP 1 Score: 120 bits (302), Expect = 6.540e-32 Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1 Query: 1 CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQHVDEGGNSCNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDEQDNSCRASAVLRGCNLETWAH 480 CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQHVDEGGNSCNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDEQDNSCRASAVLRGCNLETWAH Sbjct: 1 CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQHVDEGGNSCNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDEQDNSCRASAVLRGCNLETWAH 160
BLAST of jgi.p|Trimin1|131257 vs. uniprot
Match: A0A836CC28_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC28_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 3.190e-18 Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 1 Query: 1 CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQHVDEGGNSCNA 123 CEVNGCTKQAV RSGSTEFCVMH GGDRCQHVDEGGNSCNA Sbjct: 1 CEVNGCTKQAVRRSGSTEFCVMHEGGDRCQHVDEGGNSCNA 41
BLAST of jgi.p|Trimin1|131257 vs. uniprot
Match: A0A836CDE9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDE9_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 3.510e-13 Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1 Query: 1 CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQH 93 CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQH Sbjct: 7 CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQH 37
BLAST of jgi.p|Trimin1|131257 vs. uniprot
Match: A0A836CB44_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB44_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 1.340e-8 Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 1 Query: 1 CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQHVDEGGNSCNA 123 C ++ CTKQAV +TEFCV HGGGDRCQ++D GNSC + Sbjct: 6 CSIDDCTKQAVKGGDATEFCVKHGGGDRCQYIDAEGNSCGS 46 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131257 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16074 ID=mRNA_16074|Name=jgi.p|Trimin1|131257|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=480bp|location=Sequence derived from alignment at Contig_181:192501..193210- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGCGAAGTCAACGGATGCACCAAGCAGGCCGTGCTTCGCAGCGGCAGCACback to top protein sequence of jgi.p|Trimin1|131257 >Trimin1|131257|gw1.181.3.1 ID=Trimin1|131257|gw1.181.3.1|Name=jgi.p|Trimin1|131257|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=160bp CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQHVDEGGNSCNACAKISKSGNback to top mRNA from alignment at Contig_181:192501..193210- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16074 ID=mRNA_16074|Name=jgi.p|Trimin1|131257|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=710bp|location=Sequence derived from alignment at Contig_181:192501..193210- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_181:192501..193210- >mRNA_16074 ID=mRNA_16074|Name=jgi.p|Trimin1|131257|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=480bp|location=Sequence derived from alignment at Contig_181:192501..193210- (Tribonema minus UTEX_B_3156 )back to top |