mRNA_16074 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131257
Unique NamemRNA_16074
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|131257 vs. uniprot
Match: A0A836CIX9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIX9_9STRA)

HSP 1 Score: 120 bits (302), Expect = 6.540e-32
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1 
Query:    1 CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQHVDEGGNSCNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDEQDNSCRASAVLRGCNLETWAH 480
            CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQHVDEGGNSCNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDEQDNSCRASAVLRGCNLETWAH
Sbjct:    1 CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQHVDEGGNSCNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDEQDNSCRASAVLRGCNLETWAH 160
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BLAST of jgi.p|Trimin1|131257 vs. uniprot
Match: A0A836CC28_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC28_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.190e-18
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQHVDEGGNSCNA 123
            CEVNGCTKQAV RSGSTEFCVMH GGDRCQHVDEGGNSCNA
Sbjct:    1 CEVNGCTKQAVRRSGSTEFCVMHEGGDRCQHVDEGGNSCNA 41
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BLAST of jgi.p|Trimin1|131257 vs. uniprot
Match: A0A836CDE9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDE9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.510e-13
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1 
Query:    1 CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQH 93
            CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQH
Sbjct:    7 CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQH 37
[Close]
BLAST of jgi.p|Trimin1|131257 vs. uniprot
Match: A0A836CB44_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB44_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.340e-8
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQHVDEGGNSCNA 123
            C ++ CTKQAV    +TEFCV HGGGDRCQ++D  GNSC +
Sbjct:    6 CSIDDCTKQAVKGGDATEFCVKHGGGDRCQYIDAEGNSCGS 46
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131257 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CIX9_9STRA6.540e-32100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CC28_9STRA3.190e-1895.12Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CDE9_9STRA3.510e-13100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CB44_9STRA1.340e-860.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_181contigContig_181:192501..193210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131257|gw1.181.3.1
Hectar predicted targeting categoryother localisation
TranscriptId131579
TrackFilteredModels1
ProteinId131257
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131257gene_16074Tribonema minus UTEX_B_3156 geneContig_181 192501..193210 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131257Trimin1|131257|gw1.181.3.1Tribonema minus UTEX_B_3156 polypeptideContig_181 192501..193210 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16074_2exon_16074_2Tribonema minus UTEX_B_3156 exonContig_181 192501..192671 -
exon_16074_1exon_16074_1Tribonema minus UTEX_B_3156 exonContig_181 192902..193210 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16074CDS_16074Tribonema minus UTEX_B_3156 CDSContig_181 192902..193210 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16074 ID=mRNA_16074|Name=jgi.p|Trimin1|131257|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=480bp|location=Sequence derived from alignment at Contig_181:192501..193210- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCGAAGTCAACGGATGCACCAAGCAGGCCGTGCTTCGCAGCGGCAGCAC
TGAGTTCTGTGTCATGCACGGCGGCGGCGATCGCTGCCAGCACGTCGACG
AAGGAGGCAACTCTTGCAATGCATGTGCCAAAATCAGTAAAAGCGGAAAC
GGTGTGGTTCATATGTGCATCAAGCATGGCGGTGGCAACCGCTGCCAGCA
TGTAGACGAAGAAGGTCATTCTTGCAGGGCATCTGCTTTAACCAGCAGGA
CCGGATCCGGTGCCGTTGGTATGTGCATCAAGCATGGCGGTGGTGATCGC
TGCCAGCACGGAGGCAACTCTTGCACGTCATCTGCTGTTGCCAGTAAGAC
GGGATCCGGCGCAATCGGCATGTTTGTGAAGCACGGCGGTGGCAACCGCT
GCCAGCATGTTGATGAACAAGACAACTCTTGCAGAGCATCTGCTGTACTT
CGTGGTTGCAATTTAGAAACATGGGCGCAC
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protein sequence of jgi.p|Trimin1|131257

>Trimin1|131257|gw1.181.3.1 ID=Trimin1|131257|gw1.181.3.1|Name=jgi.p|Trimin1|131257|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=160bp
CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQHVDEGGNSCNACAKISKSGN
GVVHMCIKHGGGNRCQHVDEEGHSCRASALTSRTGSGAVGMCIKHGGGDR
CQHGGNSCTSSAVASKTGSGAIGMFVKHGGGNRCQHVDEQDNSCRASAVL
RGCNLETWAH
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mRNA from alignment at Contig_181:192501..193210-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16074 ID=mRNA_16074|Name=jgi.p|Trimin1|131257|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=710bp|location=Sequence derived from alignment at Contig_181:192501..193210- (Tribonema minus UTEX_B_3156 )
TGCGAAGTCAACGGATGCACCAAGCAGGCCGTGCTTCGCAGCGGCAGCAC
TGAGTTCTGTGTCATGCACGGCGGCGGCGATCGCTGCCAGCACGTCGACG
AAGGAGGCAACTCTTGCAATGCATGTGCCAAAATCAGTAAAAGCGGAAAC
GGTGTGGTTCATATGTGCATCAAGCATGGCGGTGGCAACCGCTGCCAGCA
TGTAGACGAAGAAGGTCATTCTTGCAGGGCATCTGCTTTAACCAGCAGGA
CCGGATCCGGTGCCGTTGGTATGTGCATCAAGCATGGCGGTGGTGATCGC
TGCCAGCACGTCAGAAGGAGGCAACTCTTGGCAGGGCATCAGATTCTGCT
GTGACCAGCAAGAGCGGATCAGGTGCCGTTGGTATGTGCTTCAAGCATGG
CGGCGGCGATCGCTGCCAGCACATTGACAATGGACACATTTCTTGCAAAG
CATCCGTGCAGAGTAGCAAGAGCGGATCCGGTACCGCTGGTATGTGCATC
AAGCATGGTGGCAGCGATGGCTGCCACCATACTGACGAGGGAGGCAACTC
TTGCACGTCATCTGCTGTTGCCAGTAAGACGGGATCCGGCGCAATCGGCA
TGTTTGTGAAGCACGGCGGTGGCAACCGCTGCCAGCATGTTGATGAACAA
GACAACTCTTGCAGAGCATCTGCTGTACTTCGTGGTTGCAATTTAGAAAC
ATGGGCGCAC
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Coding sequence (CDS) from alignment at Contig_181:192501..193210-

>mRNA_16074 ID=mRNA_16074|Name=jgi.p|Trimin1|131257|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=480bp|location=Sequence derived from alignment at Contig_181:192501..193210- (Tribonema minus UTEX_B_3156 )
TGCGAAGTCAACGGATGCACCAAGCAGGCCGTGCTTCGCAGCGGCAGCAC
TGAGTTCTGTGTCATGCACGGCGGCGGCGATCGCTGCCAGCACGTCGACG
AAGGAGGCAACTCTTGCAATGCATGTGCCAAAATCAGTAAAAGCGGAAAC
GGTGTGGTTCATATGTGCATCAAGCATGGCGGTGGCAACCGCTGCCAGCA
TGTAGACGAAGAAGGTCATTCTTGCAGGGCATCTGCTTTAACCAGCAGGA
CCGGATCCGGTGCCGTTGGTATGTGCATCAAGCATGGCGGTGGTGATCGC
TGCCAGCACGGAGGCAACTCTTGCACGTCATCTGCTGTTGCCAGTAAGAC
GGGATCCGGCGCAATCGGCATGTTTGTGAAGCACGGCGGTGGCAACCGCT
GCCAGCATGTTGATGAACAAGACAACTCTTGCAGAGCATCTGCTGTACTT
CGTGGTTGCAATTTAGAAACATGGGCGCAC
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