mRNA_15981 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|130608
Unique NamemRNA_15981
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|130608 vs. uniprot
Match: A0A835ZFE2_9STRA (TNFR-Cys domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFE2_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.930e-5
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 1 
Query:    1 CPHGHYKNNCTQCGRALFCE 60
            CPHGHYKNNCTQCGRALFCE
Sbjct:    1 CPHGHYKNNCTQCGRALFCE 20
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|130608 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZFE2_9STRA1.930e-5100.00TNFR-Cys domain-containing protein (Fragment) n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_142contigContig_142:30490..31068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|130608|gw1.142.3.1
Hectar predicted targeting categoryother localisation
TranscriptId130930
TrackFilteredModels1
ProteinId130608
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130608gene_15981Tribonema minus UTEX_B_3156 geneContig_142 30490..31068 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15981_1exon_15981_1Tribonema minus UTEX_B_3156 exonContig_142 30490..31068 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15981CDS_15981Tribonema minus UTEX_B_3156 CDSContig_142 30490..31068 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130608Trimin1|130608|gw1.142.3.1Tribonema minus UTEX_B_3156 polypeptideContig_142 30490..31068 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15981 ID=mRNA_15981|Name=jgi.p|Trimin1|130608|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=579bp|location=Sequence derived from alignment at Contig_142:30490..31068- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCCCACACGGTCACTACAAAAACAACTGTACTCAGTGTGGACGTGCACT
CTTCTGTGAGCACAATCGCAAACGGTACTTTTGTATACCCTGTAAAGGAG
CTGGTATATCTGAACACAACAAGAGACGAAATGAATGCGCTTTGTGCGGA
GGCAGCCAGGTATGTCCACATGGAAGAAGGTACACAGCATGCAAAGAGTG
TGGGGGATCAATGTATTGTGAGCACGGCAAACAGCGCAATACTTGCAAGA
CTTGTGGAGGATGCGGAATCTGTGAACACGGAAGAGTCAGATCCACATGT
GTACCGTGTGGCGGCTCGCGGACGTGTGAACACGGACGGCTACGTTCCCA
GTGTGCGCCATGTGGGGGCGCAAGAAGATGTGAACACGGTCGTATGCGCA
GCTACTGTGTAGACTGTGGGGGTTCTCGGATGTGCGAGCACGATAGAATG
CGTGCTCAGTGTAGAGAGTGTAATGGTTCGCAGATATGTGACCATGGGTT
ACTTCGCGGTCGGTGCAGAGACTGTGGTGGTTCTCAGATCTGTGAGCACA
ATGCTCGTAGAGACAAGTGCAGGATTTGC
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protein sequence of jgi.p|Trimin1|130608

>Trimin1|130608|gw1.142.3.1 ID=Trimin1|130608|gw1.142.3.1|Name=jgi.p|Trimin1|130608|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=193bp
CPHGHYKNNCTQCGRALFCEHNRKRYFCIPCKGAGISEHNKRRNECALCG
GSQVCPHGRRYTACKECGGSMYCEHGKQRNTCKTCGGCGICEHGRVRSTC
VPCGGSRTCEHGRLRSQCAPCGGARRCEHGRMRSYCVDCGGSRMCEHDRM
RAQCRECNGSQICDHGLLRGRCRDCGGSQICEHNARRDKCRIC
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mRNA from alignment at Contig_142:30490..31068-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15981 ID=mRNA_15981|Name=jgi.p|Trimin1|130608|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=579bp|location=Sequence derived from alignment at Contig_142:30490..31068- (Tribonema minus UTEX_B_3156 )
TGCCCACACGGTCACTACAAAAACAACTGTACTCAGTGTGGACGTGCACT
CTTCTGTGAGCACAATCGCAAACGGTACTTTTGTATACCCTGTAAAGGAG
CTGGTATATCTGAACACAACAAGAGACGAAATGAATGCGCTTTGTGCGGA
GGCAGCCAGGTATGTCCACATGGAAGAAGGTACACAGCATGCAAAGAGTG
TGGGGGATCAATGTATTGTGAGCACGGCAAACAGCGCAATACTTGCAAGA
CTTGTGGAGGATGCGGAATCTGTGAACACGGAAGAGTCAGATCCACATGT
GTACCGTGTGGCGGCTCGCGGACGTGTGAACACGGACGGCTACGTTCCCA
GTGTGCGCCATGTGGGGGCGCAAGAAGATGTGAACACGGTCGTATGCGCA
GCTACTGTGTAGACTGTGGGGGTTCTCGGATGTGCGAGCACGATAGAATG
CGTGCTCAGTGTAGAGAGTGTAATGGTTCGCAGATATGTGACCATGGGTT
ACTTCGCGGTCGGTGCAGAGACTGTGGTGGTTCTCAGATCTGTGAGCACA
ATGCTCGTAGAGACAAGTGCAGGATTTGC
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Coding sequence (CDS) from alignment at Contig_142:30490..31068-

>mRNA_15981 ID=mRNA_15981|Name=jgi.p|Trimin1|130608|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=579bp|location=Sequence derived from alignment at Contig_142:30490..31068- (Tribonema minus UTEX_B_3156 )
TGCCCACACGGTCACTACAAAAACAACTGTACTCAGTGTGGACGTGCACT
CTTCTGTGAGCACAATCGCAAACGGTACTTTTGTATACCCTGTAAAGGAG
CTGGTATATCTGAACACAACAAGAGACGAAATGAATGCGCTTTGTGCGGA
GGCAGCCAGGTATGTCCACATGGAAGAAGGTACACAGCATGCAAAGAGTG
TGGGGGATCAATGTATTGTGAGCACGGCAAACAGCGCAATACTTGCAAGA
CTTGTGGAGGATGCGGAATCTGTGAACACGGAAGAGTCAGATCCACATGT
GTACCGTGTGGCGGCTCGCGGACGTGTGAACACGGACGGCTACGTTCCCA
GTGTGCGCCATGTGGGGGCGCAAGAAGATGTGAACACGGTCGTATGCGCA
GCTACTGTGTAGACTGTGGGGGTTCTCGGATGTGCGAGCACGATAGAATG
CGTGCTCAGTGTAGAGAGTGTAATGGTTCGCAGATATGTGACCATGGGTT
ACTTCGCGGTCGGTGCAGAGACTGTGGTGGTTCTCAGATCTGTGAGCACA
ATGCTCGTAGAGACAAGTGCAGGATTTGC
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