Trimin1|130608|gw1.142.3.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|130608
Unique NameTrimin1|130608|gw1.142.3.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length193
Homology
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BLAST of jgi.p|Trimin1|130608 vs. uniprot
Match: A0A835ZFE2_9STRA (TNFR-Cys domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFE2_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.930e-5
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 0 
Query:    1 CPHGHYKNNCTQCGRALFCE 20
            CPHGHYKNNCTQCGRALFCE
Sbjct:    1 CPHGHYKNNCTQCGRALFCE 20
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|130608 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZFE2_9STRA1.930e-5100.00TNFR-Cys domain-containing protein (Fragment) n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001368TNFR/NGFR cysteine-rich regionPROSITEPS00652TNFR_NGFR_1coord: 67..109

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_142contigContig_142:30490..31068 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130608mRNA_15981Tribonema minus UTEX_B_3156 mRNAContig_142 30490..31068 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|130608|gw1.142.3.1 ID=Trimin1|130608|gw1.142.3.1|Name=jgi.p|Trimin1|130608|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=193bp
CPHGHYKNNCTQCGRALFCEHNRKRYFCIPCKGAGISEHNKRRNECALCG
GSQVCPHGRRYTACKECGGSMYCEHGKQRNTCKTCGGCGICEHGRVRSTC
VPCGGSRTCEHGRLRSQCAPCGGARRCEHGRMRSYCVDCGGSRMCEHDRM
RAQCRECNGSQICDHGLLRGRCRDCGGSQICEHNARRDKCRIC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001368TNFR/NGFR_Cys_rich_reg