mRNA_15952 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352573
Unique NamemRNA_15952
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352573 vs. uniprot
Match: A0A835ZCZ5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCZ5_9STRA)

HSP 1 Score: 122 bits (306), Expect = 4.470e-33
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 AAGSTDEVQGRAAGAREHANAGHGAADAHAVAADELAAVQTDAAPRHRGQERGAPAVAAAAQHRLEQ 201
            AAGSTDEVQGRAAGAREHANAGHGAADAHAVAADELAAVQTDAAPRHRGQERGAPAVAAAAQHRLEQ
Sbjct:    1 AAGSTDEVQGRAAGAREHANAGHGAADAHAVAADELAAVQTDAAPRHRGQERGAPAVAAAAQHRLEQ 67
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352573 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZCZ5_9STRA4.470e-33100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_124contigContig_124:118920..121666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352573|estExt_Genemark1.C_Ctg_1240017
Hectar predicted targeting categoryother localisation
TranscriptId352895
TrackFilteredModels1
ProteinId352573
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352573gene_15952Tribonema minus UTEX_B_3156 geneContig_124 118920..121666 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15952_3exon_15952_3Tribonema minus UTEX_B_3156 exonContig_124 118920..119216 -
exon_15952_2exon_15952_2Tribonema minus UTEX_B_3156 exonContig_124 120354..120456 -
exon_15952_1exon_15952_1Tribonema minus UTEX_B_3156 exonContig_124 121646..121666 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15952UTR3_15952Tribonema minus UTEX_B_3156 three_prime_UTRContig_124 118920..118920 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15952CDS_15952Tribonema minus UTEX_B_3156 CDSContig_124 121646..121666 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352573Trimin1|352573|estExt_Genemark1.C_Ctg_1240017Tribonema minus UTEX_B_3156 polypeptideContig_124 118921..121666 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15952 ID=mRNA_15952|Name=jgi.p|Trimin1|352573|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=421bp|location=Sequence derived from alignment at Contig_124:118920..121666- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCTGCGGGAAGCACTGATGAGGTACAAGGGCGCGCAGCTGGTGCCCGTGA
ACACGCCAACGCCGGTCACGGCGCCGCCGACGCGCACGCCGTCGCGGCGG
ATGAGCTCGCGGCTGTTCAGACAGACGCTGCGCCCCGACATCGCGGGCAA
GAACGCGGAGCGCCAGCTGTGGCAGCGGCTGCGCAACACCGTCTGGAACA
AGGCGGAGCTCGGCGACGACGACTCGCTGAGCGCTGGCGCGGACAGCAGC
AGCGCGAGCACCGCCACGACGCAGCAGCGGCGCCAGGAGGCGGCGGCGGC
GGCGGCGGCGGAGGCGGAGCTCGTGGCCGCGTTCCGGCCGCGGGCGGCGG
CGGCAGCGGGGGGGGCGCCGGCGGCGGACCGGCCGCCGCGGCAGCACCGG
CACCGCGCCGCCGCCAACTGA
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protein sequence of jgi.p|Trimin1|352573

>Trimin1|352573|estExt_Genemark1.C_Ctg_1240017 ID=Trimin1|352573|estExt_Genemark1.C_Ctg_1240017|Name=jgi.p|Trimin1|352573|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=140bp
AAGSTDEVQGRAAGAREHANAGHGAADAHAVAADELAAVQTDAAPRHRGQ
ERGAPAVAAAAQHRLEQGGARRRRLAERWRGQQQREHRHDAAAAPGGGGG
GGGGGGARGRVPAAGGGGSGGGAGGGPAAAAAPAPRRRQL
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mRNA from alignment at Contig_124:118920..121666-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15952 ID=mRNA_15952|Name=jgi.p|Trimin1|352573|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2747bp|location=Sequence derived from alignment at Contig_124:118920..121666- (Tribonema minus UTEX_B_3156 )
GCTGCGGGAAGCACTGATGAGGTGAGTACAAGATGAAGCTGTGTAGATGC
TCATGTTTGAAGTTGAGACTCTACGGATTGAATGCTCACCTTTTGAAGTT
GAGCTAGAAGCGTCAATTCATGGGGTCTGTGGCTCAAAGGGCTGCGAGAA
GCACCGATGATGTGAGTGTACGATAAAGCTGCGTTGATGGTGCATGCTCC
TCTTTAGAAAGGTGAGACTCAACGGAATGGTTGGTCGCCTTTTGAAGTTG
AGCTGGAGGCGTAAACTTACGGGACCTCTGGCTGAAAGGGCTGCGGGAAG
CTCTGATGGTGAGTATATGATGAAGCTCTGATGTTGAAGCTGTGTTGTTG
ATAGATGCTCACCTGCACAGGATGGATGCTCACCTTTGAGGAGCATTGAT
GAGGTGAGTATGATAAAGCTGTGTTGATGATGGATGCTTACCTTTGAAGT
CGAGACTCAACGGGTGGACGCTCACCTTTTGAAGTTGAGTTTTCAAAGGA
GTGCGATGGGGTCCGAGCCGCTGCTCGTTGCTGGCGCTGGCCCTGTATAT
GGTGCCTGCTGCAATTTCACCGCCGCACCGCATTCCCAGCAGGAAATCCA
GCACCCTTTGCCGCAGTTACAGCGCAGATGATGACGCTGCAAAGGCAAAC
CTAGCAAGCTCAGCGTTTTCAGAGCTTGCGAGTTTTTGGTCTTCTGAGCG
TGCTGCGTGCGCGCATTTGTAACTCGCACTGCCGCGCTGCCGCCCCCTGC
GTGCTGGCATGTGCCATGCTTTTTGGGTTGTCGTCAAACGCGACTTGGTG
TACAGCCGAGTCTCCGAGTGGGGCTCTGAGGCAGGCTCTGAGTCAAGGTG
TCACTGGCAGCCAGGCCTCGCTGCCGCTGCCGCTGTGCACACGTTGACAG
TGTGCACCATCGCTGGGCCCCATCATGACAACTTCAATGTTGAGGTGTCA
TTTCATCCAGGCCAAATGTCACTTGCTGAGACCAACACGACGGCAAAAGC
GCAGGGTCGACGCTTATGGTGTTGATAAAGTTATCAGGGTCATATAGCCC
GTGCGCGGGCTCATTGCGGGCCGGCGCAAGCACAACAGCTGCGCGCACCT
GACTAAGGTTACTGAAGTATAAAGTTACTGAAGTATGGGTTGAAGTTGAC
TGCTGTAAGTGTCATGCATCGGTGCTCATCGATCCTCACGCTCACGGTTG
ATCGGCGCAGGTACAAGGGCGCGCAGCTGGTGCCCGTGAACACGCCAACG
CCGGTCACGGCGCCGCCGACGCGCACGCCGTCGCGGCGGATGAGCTCGCG
GCTGTTCAGACAGGTGCGTCACAGACTTGAAGTTGCACTCACACAGTTCA
CACGGCGGCGTCTTGTGTGCATGACCAGTGGGTGGGTGGGGTTGTGGGGT
ATGGAATTCAGTTGGTGGTGTCTTGAGGCTTCAAACTCCGTGGAGACAAG
AAGCGGTTTTTGTTCGTGGGACGAGCACGTCACCAACTTCTCCGCGTCCG
AGTTCAATTGTGAGAAGCGGGGGCGGTGCGTATCGCCGATACCATCAGTG
CGGTTTCCGCAGTGACTTGATTCTAGTCACACCATCGGTTCCTGCCGCAG
CATCTGTCCATGACGATGAATACGTTCTTTGTGGCGTATAGCCGTATGGC
TGGGAATAAACCTTATCAAATAGGGCACTGATGCAGCACCTCAAAGCGCC
GCGAAAGTGCGCAGCGGCGCGTGCAGGTCGGAACAGACCTGCGGTAGGCG
CCTGTTGTGCGTTGCCCGGCTGGGCTTAAAGTCTGTACCAGCACCAGCAC
CACCACCAGCAGCAGCAGCTGCGCGTGTGAGCCCTCGGCGCGCCTGCACC
ACTCACGCGCCGCTCGCACACGGCTAGCTGACCTGGCGCTGAGCACTGCC
TGATACAACTTTTGCCGCCAGCTTGTGCATGGCGCACTTGTGTTGGCAAG
TAAGTAGGGTTGGGGTCAGGGGAAAGGGTTAGGGTTAGGTGTTAGGGTCA
GCGGTCAGGGTCAGGTTAGGGTTAGGTTTGGGTGAGGCTTGCCGGCGCGC
TGCCGTCATGCCTTCGCAGCGGCCCTCCGAATGGCCCACGCAATCTTGCT
CAGAAATCGTCAGCGCCCCTTCCTCTCCGCTGCGCGGCTGCACGCGCGCA
CCTGCAATCGCGCCTGTACTCTGTGCGACCGTCCATAGGCGTTCACAATC
AGTTGCCAATCACCAATACTGTGCAAGCCTGTTCTTGCCCACCGCAGCAG
AACAAACACCCGCGTGTGTGCGCTACCACCATTAAGCGCAAAATGACTAG
TGCCCCCCCCGTACTTTCATCTTTGCCCCCCCCCCCGCGCCCCCACCCGT
GAGCGCAAAATTGACTACCGCCCCCCCCCCTCACCCCCCGTACCTCAATC
TTAACCCCCCGCCCACCCCCCCCACCCCCGCCCCCGCCCTGCGCGACCAG
ACGCTGCGCCCCGACATCGCGGGCAAGAACGCGGAGCGCCAGCTGTGGCA
GCGGCTGCGCAACACCGTCTGGAACAAGGCGGAGCTCGGCGACGACGACT
CGCTGAGCGCTGGCGCGGACAGCAGCAGCGCGAGCACCGCCACGACGCAG
CAGCGGCGCCAGGAGGCGGCGGCGGCGGCGGCGGCGGAGGCGGAGCTCGT
GGCCGCGTTCCGGCCGCGGGCGGCGGCGGCAGCGGGGGGGGCGCCGGCGG
CGGACCGGCCGCCGCGGCAGCACCGGCACCGCGCCGCCGCCAACTGA
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Coding sequence (CDS) from alignment at Contig_124:118920..121666-

>mRNA_15952 ID=mRNA_15952|Name=jgi.p|Trimin1|352573|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=420bp|location=Sequence derived from alignment at Contig_124:118920..121666- (Tribonema minus UTEX_B_3156 )
GCTGCGGGAAGCACTGATGAGGTACAAGGGCGCGCAGCTGGTGCCCGTGA
ACACGCCAACGCCGGTCACGGCGCCGCCGACGCGCACGCCGTCGCGGCGG
ATGAGCTCGCGGCTGTTCAGACAGACGCTGCGCCCCGACATCGCGGGCAA
GAACGCGGAGCGCCAGCTGTGGCAGCGGCTGCGCAACACCGTCTGGAACA
AGGCGGAGCTCGGCGACGACGACTCGCTGAGCGCTGGCGCGGACAGCAGC
AGCGCGAGCACCGCCACGACGCAGCAGCGGCGCCAGGAGGCGGCGGCGGC
GGCGGCGGCGGAGGCGGAGCTCGTGGCCGCGTTCCGGCCGCGGGCGGCGG
CGGCAGCGGGGGGGGCGCCGGCGGCGGACCGGCCGCCGCGGCAGCACCGG
CACCGCGCCGCCGCCAACTG
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