mRNA_15909 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|180191
Unique NamemRNA_15909
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|180191 vs. uniprot
Match: A0A835Z162_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z162_9STRA)

HSP 1 Score: 314 bits (804), Expect = 2.010e-108
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1 
Query:    1 MAATYGYRQHDHHRLEEQQQYDYQQQPQTRRSSEAQQTKIVGNGAKRWNTGEIVSFFNDLLQLDSADAASEPLANIKESSSGCYALQVLDAMYPGCFRLKDCVWGKRDEVLPYEIANNYRILLGGLQKAGVPHSIDMEGVTAGRASCVLEFNQWL 465
            MAATYGYRQHDHHRLEEQQQYDYQQQPQTRRSSEAQQTKIVGNGAKRWNTGEIVSFFNDLLQLDSADAASEPLANIKESSSGCYALQVLDAMYPGCFRLKDCVWGKRDEVLPYEIANNYRILLGGLQKAGVPHSIDMEGVTAGRASCVLEFNQWL
Sbjct:    1 MAATYGYRQHDHHRLEEQQQYDYQQQPQTRRSSEAQQTKIVGNGAKRWNTGEIVSFFNDLLQLDSADAASEPLANIKESSSGCYALQVLDAMYPGCFRLKDCVWGKRDEVLPYEIANNYRILLGGLQKAGVPHSIDMEGVTAGRASCVLEFNQWL 155
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BLAST of jgi.p|Trimin1|180191 vs. uniprot
Match: A0A836CQU4_9STRA (Putative microtubule associated protein EB1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQU4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.560e-7
Identity = 34/103 (33.01%), Postives = 53/103 (51.46%), Query Frame = 1 
Query:  154 EIVSFFNDLLQLDSADAASEPLANIKESSSGCYALQVLDAMYPGCFRLKDCVWGKRDEVLPYEIANNYRILLGGLQKAGVPHSIDMEGVTAGRASCVLEFNQW 462
            EI+ + N  L L+        L+ I+E++SGC ALQ++DA YPG   ++   W  R++   YE   NY++L     K  V   I ++ +   +    LEF QW
Sbjct:   18 EILEWLNGTLSLN--------LSKIEETASGCVALQLMDACYPGQVSIQKLNWSARND---YEFIQNYKLLQTAFDKFHVDKHIPVDKIVRAKYQDNLEFMQW 109
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BLAST of jgi.p|Trimin1|180191 vs. uniprot
Match: A0A7S4AT87_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AT87_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.440e-7
Identity = 35/104 (33.65%), Postives = 53/104 (50.96%), Query Frame = 1 
Query:  154 EIVSFFNDLLQLDSADAASEPLANIKESSSGCYALQVLDAMYPGCFRLKDCVWGKRDEVLPYEIANNYRILLGGLQKAGVPHSIDMEGVTAGRASCVLEFNQWL 465
            E++SFFNDLL L+        LA I+++++G  A Q+ D ++PG   L    W  R +   YE   NY++L     K  V   +D+  +   +    LEF QWL
Sbjct:   22 ELLSFFNDLLDLN--------LAKIEQTATGAVACQLTDYIFPGTVPLSRINWEARSD---YEFVANYKLLQAAFTKHRVQRYVDVTKLIRAKYQDNLEFCQWL 114
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BLAST of jgi.p|Trimin1|180191 vs. uniprot
Match: A0A7S4AT91_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AT91_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 4.370e-5
Identity = 29/86 (33.72%), Postives = 45/86 (52.33%), Query Frame = 1 
Query:  154 EIVSFFNDLLQLDSADAASEPLANIKESSSGCYALQVLDAMYPGCFRLKDCVWGKRDEVLPYEIANNYRILLGGLQKAGVPHSIDM 411
            E++SFFNDLL L+        LA I+++++G  A Q+ D ++PG   L    W  R +   YE   NY++L     K  V   +D+
Sbjct:   22 ELLSFFNDLLDLN--------LAKIEQTATGAVACQLTDYIFPGTVPLSRINWEARSD---YEFVANYKLLQAAFTKHRVQRYVDV 96
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180191 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835Z162_9STRA2.010e-108100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CQU4_9STRA1.560e-733.01Putative microtubule associated protein EB1 n=1 Ta... [more]
A0A7S4AT87_9STRA3.440e-733.65Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S4AT91_9STRA4.370e-533.72Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_210contigContig_210:68836..69300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|180191|e_gw1.210.55.1
BRITEko00000,ko03036,ko04812
KEGG koko:K10436
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000079,GO:0000226,GO:0000235,GO:0000278,GO:0000280,GO:0000281,GO:0000741,GO:0000742,GO:0000743,GO:0000746,GO:0000747,GO:0000775,GO:0000776,GO:0000819,GO:0000910,GO:0000922,GO:0001100,GO:0001671,GO:0001932,GO:0001934,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005816,GO:0005818,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0005881,GO:0005938,GO:0006276,GO:0006355,GO:0006810,GO:0006928,GO:0006996,GO:0006997,GO:0007010,GO:0007017,GO:0007018,GO:0007019,GO:0007020,GO:0007026,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007062,GO:0007064,GO:0007080,GO:0007088,GO:0007093,GO:0007096,GO:0007097,GO:0007127,GO:0007163,GO:0007346,GO:0008017,GO:0008022,GO:0008047,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008608,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010639,GO:0010948,GO:0010965,GO:0010970,GO:0015630,GO:0015631,GO:0016043,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022402,GO:0022411,GO:0022414,GO:0022607,GO:0030010,GO:0030071,GO:0030234,GO:0030473,GO:0030496,GO:0030541,GO:0030543,GO:0030674,GO:0030705,GO:0030863,GO:0030981,GO:0030989,GO:0031109,GO:0031110,GO:0031111,GO:0031112,GO:0031113,GO:0031114,GO:0031116,GO:0031143,GO:0031252,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031399,GO:0031401,GO:0031503,GO:0031577,GO:0031578,GO:0031592,GO:0032268,GO:0032270,GO:0032271,GO:0032273,GO:0032781,GO:0032886,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033365,GO:0033566,GO:0033674,GO:0034613,GO:0034622,GO:0034629,GO:0035371,GO:0035372,GO:0042325,GO:0042327,GO:0042802,GO:0042803,GO:0042995,GO:0043085,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043242,GO:0043244,GO:0043254,GO:0043462,GO:0043549,GO:0043624,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044380,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044450,GO:0044464,GO:0044703,GO:0044732,GO:0044764,GO:0044877,GO:0045737,GO:0045786,GO:0045787,GO:0045839,GO:0045841,GO:0045859,GO:0045860,GO:0045893,GO:0045930,GO:0045935,GO:0045937,GO:0046785,GO:0046907,GO:0046983,GO:0048284,GO:0048285,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050000,GO:0050789,GO:0050790,GO:0050794,GO:0051010,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051225,GO:0051233,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051258,GO:0051261,GO:0051276,GO:0051285,GO:0051286,GO:0051301,GO:0051303,GO:0051310,GO:0051315,GO:0051321,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051493,GO:0051494,GO:0051495,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0055028,GO:0060090,GO:0060255,GO:0060589,GO:0060590,GO:0061171,GO:0061640,GO:0061673,GO:0061982,GO:0065003,GO:0065007,GO:0065009,GO:0070507,GO:0070727,GO:0070840,GO:0070925,GO:0071174,GO:0071840,GO:0071900,GO:0071902,GO:0071944,GO:0071988,GO:0072384,GO:0072686,GO:0072698,GO:0080090,GO:0090307,GO:0097435,GO:0098687,GO:0098772,GO:0098813,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0099568,GO:0099738,GO:0120025,GO:0140013,GO:0140014,GO:1901879,GO:1901880,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902440,GO:1902680,GO:1902850,GO:1902903,GO:1902904,GO:1902905,GO:1903046,GO:1903047,GO:1903506,GO:1903508,GO:1904029,GO:1904031,GO:1904825,GO:1905508,GO:1905725,GO:1905818,GO:1905819,GO:1990023,GO:1990735,GO:1990752,GO:2000112,GO:2000816,GO:2001141,GO:2001251
Preferred nameBIM1
Descriptionmicrotubule binding
COG categoryDZ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5217@1|root,KOG3000@2759|Eukaryota
Evalue1.13e-07
Seed ortholog45157.CMJ156CT
Hectar predicted targeting categoryother localisation
TranscriptId180513
TrackFilteredModels1
ProteinId180191
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180191gene_15909Tribonema minus UTEX_B_3156 geneContig_210 68836..69300 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15909_1exon_15909_1Tribonema minus UTEX_B_3156 exonContig_210 68836..69300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15909CDS_15909Tribonema minus UTEX_B_3156 CDSContig_210 68836..69300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180191Trimin1|180191|e_gw1.210.55.1Tribonema minus UTEX_B_3156 polypeptideContig_210 68836..69300 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15909 ID=mRNA_15909|Name=jgi.p|Trimin1|180191|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=465bp|location=Sequence derived from alignment at Contig_210:68836..69300+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCGACCTACGGCTACCGCCAACACGATCATCATCGCCTTGAGGA
GCAGCAGCAGTATGATTACCAGCAGCAACCACAGACGAGACGGTCATCGG
AGGCGCAGCAGACTAAAATCGTGGGGAATGGCGCCAAGCGCTGGAACACT
GGTGAGATCGTGTCTTTTTTCAATGACCTGCTGCAGCTGGACTCCGCAGA
TGCTGCCTCCGAGCCTCTGGCCAACATTAAGGAGAGCAGCAGCGGCTGCT
ATGCACTCCAGGTGCTCGATGCCATGTACCCGGGGTGCTTCAGGCTAAAG
GACTGCGTCTGGGGCAAGCGCGACGAAGTGCTGCCGTACGAGATCGCCAA
CAACTACAGGATACTGCTGGGCGGGCTGCAGAAGGCGGGGGTGCCCCACT
CCATCGACATGGAGGGCGTCACGGCGGGCCGTGCCAGCTGCGTCCTGGAG
TTCAACCAGTGGCTC
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protein sequence of jgi.p|Trimin1|180191

>Trimin1|180191|e_gw1.210.55.1 ID=Trimin1|180191|e_gw1.210.55.1|Name=jgi.p|Trimin1|180191|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=155bp
MAATYGYRQHDHHRLEEQQQYDYQQQPQTRRSSEAQQTKIVGNGAKRWNT
GEIVSFFNDLLQLDSADAASEPLANIKESSSGCYALQVLDAMYPGCFRLK
DCVWGKRDEVLPYEIANNYRILLGGLQKAGVPHSIDMEGVTAGRASCVLE
FNQWL
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mRNA from alignment at Contig_210:68836..69300+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15909 ID=mRNA_15909|Name=jgi.p|Trimin1|180191|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=465bp|location=Sequence derived from alignment at Contig_210:68836..69300+ (Tribonema minus UTEX_B_3156 )
ATGGCTGCGACCTACGGCTACCGCCAACACGATCATCATCGCCTTGAGGA
GCAGCAGCAGTATGATTACCAGCAGCAACCACAGACGAGACGGTCATCGG
AGGCGCAGCAGACTAAAATCGTGGGGAATGGCGCCAAGCGCTGGAACACT
GGTGAGATCGTGTCTTTTTTCAATGACCTGCTGCAGCTGGACTCCGCAGA
TGCTGCCTCCGAGCCTCTGGCCAACATTAAGGAGAGCAGCAGCGGCTGCT
ATGCACTCCAGGTGCTCGATGCCATGTACCCGGGGTGCTTCAGGCTAAAG
GACTGCGTCTGGGGCAAGCGCGACGAAGTGCTGCCGTACGAGATCGCCAA
CAACTACAGGATACTGCTGGGCGGGCTGCAGAAGGCGGGGGTGCCCCACT
CCATCGACATGGAGGGCGTCACGGCGGGCCGTGCCAGCTGCGTCCTGGAG
TTCAACCAGTGGCTC
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Coding sequence (CDS) from alignment at Contig_210:68836..69300+

>mRNA_15909 ID=mRNA_15909|Name=jgi.p|Trimin1|180191|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=465bp|location=Sequence derived from alignment at Contig_210:68836..69300+ (Tribonema minus UTEX_B_3156 )
ATGGCTGCGACCTACGGCTACCGCCAACACGATCATCATCGCCTTGAGGA
GCAGCAGCAGTATGATTACCAGCAGCAACCACAGACGAGACGGTCATCGG
AGGCGCAGCAGACTAAAATCGTGGGGAATGGCGCCAAGCGCTGGAACACT
GGTGAGATCGTGTCTTTTTTCAATGACCTGCTGCAGCTGGACTCCGCAGA
TGCTGCCTCCGAGCCTCTGGCCAACATTAAGGAGAGCAGCAGCGGCTGCT
ATGCACTCCAGGTGCTCGATGCCATGTACCCGGGGTGCTTCAGGCTAAAG
GACTGCGTCTGGGGCAAGCGCGACGAAGTGCTGCCGTACGAGATCGCCAA
CAACTACAGGATACTGCTGGGCGGGCTGCAGAAGGCGGGGGTGCCCCACT
CCATCGACATGGAGGGCGTCACGGCGGGCCGTGCCAGCTGCGTCCTGGAG
TTCAACCAGTGGCTC
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