mRNA_15764 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|133941 vs. uniprot
Match: A0A835Z4C0_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4C0_9STRA) HSP 1 Score: 328 bits (840), Expect = 7.540e-114 Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1 Query: 1 AAPRRAPVERWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKTCHR 471 AAPRRAPVERWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKTCHR Sbjct: 1 AAPRRAPVERWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKTCHR 157
BLAST of jgi.p|Trimin1|133941 vs. uniprot
Match: A0A835YK87_9STRA (Homeodomain-like protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK87_9STRA) HSP 1 Score: 284 bits (727), Expect = 1.880e-96 Identity = 132/153 (86.27%), Postives = 140/153 (91.50%), Query Frame = 1 Query: 13 RAPVERWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKTCHR 471 RAP +RWSPEED RL R V+ F +NWRRISAVVGTKKAVQCMQRW+RSLRPDLKKGRWT EEDALLIELITQG KTW ELSNRI GRSAKQCRERWTHHL+PAVNKDVF PEEDW I+STQAA+GNRWSHIAAMLPGRTENAVK+RWKTCHR Sbjct: 16 RAPAQRWSPEEDGRLTRAVETFDEKNWRRISAVVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQCRERWTHHLDPAVNKDVFAPEEDWLIISTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 168
BLAST of jgi.p|Trimin1|133941 vs. uniprot
Match: A0A836C964_9STRA (Ternary protein-Dna Complex3 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C964_9STRA) HSP 1 Score: 227 bits (579), Expect = 1.500e-74 Identity = 108/123 (87.80%), Postives = 114/123 (92.68%), Query Frame = 1 Query: 109 VVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQ--CRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKTCHR 471 +VGTKKAVQCMQRW+RSLRPDLKKGRWT EEDALLIELITQG KTW ELSNRI GRSAKQ CRERWTHHL+PAV+KD FT EEDW IVSTQAA+GNRWSHIAAMLPGRTENAVK+RWKTCHR Sbjct: 1 LVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 123
BLAST of jgi.p|Trimin1|133941 vs. uniprot
Match: A0A835Z2Q0_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Q0_9STRA) HSP 1 Score: 191 bits (486), Expect = 4.340e-60 Identity = 85/142 (59.86%), Postives = 110/142 (77.46%), Query Frame = 1 Query: 31 WSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRW 456 W+ +ED+RLR V F ++W R +A VGTK A QCMQRW+R+L+PD++KGRW EEDALL++L+T+G+ +W+E + I GRSAKQCRERW HHL+PAV++ FTP ED +V+ QAA GN W+ IAA LPGRTEN VK RW Sbjct: 1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRW 142
BLAST of jgi.p|Trimin1|133941 vs. uniprot
Match: D0NJN5_PHYIT (Myb-like DNA-binding protein, putative n=2 Tax=Phytophthora TaxID=4783 RepID=D0NJN5_PHYIT) HSP 1 Score: 175 bits (443), Expect = 3.100e-52 Identity = 80/150 (53.33%), Postives = 107/150 (71.33%), Query Frame = 1 Query: 13 RAPVERWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKT 462 +A +RW+PEEDD+LR V RNW+ I+ V + QC+QRW + L P L KG W EED LL EL+ +G K W +++ RI GR++KQCRERW +HL+P++ + ++PEED I+ QA +GNRWS IAAMLPGRTE+AVKIRWK+ Sbjct: 79 KAVPKRWTPEEDDKLREAVGRHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPEEDDLLKELVAEGRKNWGQVATRIPGRTSKQCRERWYNHLDPSIIRGEYSPEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 228
BLAST of jgi.p|Trimin1|133941 vs. uniprot
Match: H3G911_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G911_PHYRM) HSP 1 Score: 170 bits (430), Expect = 3.040e-51 Identity = 77/150 (51.33%), Postives = 107/150 (71.33%), Query Frame = 1 Query: 13 RAPVERWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKT 462 +A +RW+PEED++LR V+ RNW+ I+ V + QC+QRW + L P L KG W +ED LL EL+ +G K W +++ RI GR++KQCRERW +HL+P++ + ++ EED I+ QA +GNRWS IAAMLPGRTE+AVKIRWK+ Sbjct: 6 KAVPKRWTPEEDEKLREAVNRHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPDEDDLLKELVAEGRKNWGQVATRIPGRTSKQCRERWYNHLDPSIVRGEYSAEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 155
BLAST of jgi.p|Trimin1|133941 vs. uniprot
Match: A0A6H5K458_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K458_9PHAE) HSP 1 Score: 179 bits (453), Expect = 4.480e-51 Identity = 81/148 (54.73%), Postives = 105/148 (70.95%), Query Frame = 1 Query: 28 RWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKTCHR 471 RWSPEED+RLR V+ + +W+ I+A V T+ VQC+QRWK+ L P L KG+WT EED LL+ ++ +G+K W LS R+ GR++KQCRERW HHL+P + K +T EED IVS Q +GN+W+ IA L GRTENA KIRWK R Sbjct: 70 RWSPEEDERLRAAVERYHGTSWKEIAAEVKTRNHVQCLQRWKKVLTPGLVKGQWTPEEDKLLVSIVNEGHKNWGSLSARVPGRTSKQCRERWCHHLDPRIVKGGWTEEEDQIIVSLQQQMGNKWAKIAQHLDGRTENATKIRWKILER 217
BLAST of jgi.p|Trimin1|133941 vs. uniprot
Match: D8LM16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM16_ECTSI) HSP 1 Score: 173 bits (439), Expect = 6.950e-51 Identity = 79/148 (53.38%), Postives = 104/148 (70.27%), Query Frame = 1 Query: 28 RWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKTCHR 471 RW P ED +L V ++W+ I+ VG++ VQC+QRWK+ LRP L KG+W EEDA L++L T +K W LS ++GR++KQCRERW HHL+P++NK +T EED I+ TQA +GNRWS IAA LPGRTEN++KIR K R Sbjct: 108 RWQPAEDKKLTLAVKESGEKDWKSIALKVGSRNHVQCLQRWKKVLRPGLVKGQWDAEEDAALMKLATAPFKNWGVLSQSMSGRTSKQCRERWCHHLDPSINKGAYTEEEDNIIIETQAELGNRWSQIAARLPGRTENSIKIRCKALQR 255
BLAST of jgi.p|Trimin1|133941 vs. uniprot
Match: A0A7S2UU49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU49_9STRA) HSP 1 Score: 174 bits (440), Expect = 1.880e-50 Identity = 77/148 (52.03%), Postives = 108/148 (72.97%), Query Frame = 1 Query: 28 RWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKTCHR 471 +W+ ED+ LR V + NW+ I+ VGT+ VQC+QRWK+ L+P L KG+W+ EDA L++L+ +G+K W +L+ ++ GR++KQCRERW+HHL+P+V K +T EED TI+ Q+ +GN+WS IA LPGRTENAVKIRWK R Sbjct: 29 KWTLVEDEELRHAVRKYGESNWKDIAREVGTRNHVQCLQRWKKVLKPGLVKGQWSALEDAKLVDLVGKGFKNWGQLAAQMPGRTSKQCRERWSHHLDPSVKKGEYTTEEDNTILRLQSELGNKWSEIAKHLPGRTENAVKIRWKALDR 176
BLAST of jgi.p|Trimin1|133941 vs. uniprot
Match: A0A0W8DM41_PHYNI (Gamma-soluble NSF attachment protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DM41_PHYNI) HSP 1 Score: 175 bits (444), Expect = 3.530e-50 Identity = 80/150 (53.33%), Postives = 107/150 (71.33%), Query Frame = 1 Query: 13 RAPVERWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKT 462 +A +RW+PEEDD+LR V RNW+ I+ V + QC+QRW + L P L KG W EED LL EL+ +G K W +++ RI GR++KQCRERW +HL+P++ + ++PEED I+ QA +GNRWS IAAMLPGRTE+AVKIRWK+ Sbjct: 109 KAVPKRWTPEEDDKLREAVGRHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPEEDELLKELVAEGRKNWGQVATRIPGRTSKQCRERWYNHLDPSIVRGEYSPEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 258 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133941 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15764 ID=mRNA_15764|Name=jgi.p|Trimin1|133941|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=471bp|location=Sequence derived from alignment at Contig_203:118972..120115- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCTGCGCCGCGTCGGGCTCCTGTCGAGCGTTGGAGTCCAGAGGAGGACGAback to top protein sequence of jgi.p|Trimin1|133941 >Trimin1|133941|gw1.203.8.1 ID=Trimin1|133941|gw1.203.8.1|Name=jgi.p|Trimin1|133941|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=157bp AAPRRAPVERWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWback to top mRNA from alignment at Contig_203:118972..120115- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15764 ID=mRNA_15764|Name=jgi.p|Trimin1|133941|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1144bp|location=Sequence derived from alignment at Contig_203:118972..120115- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_203:118972..120115- >mRNA_15764 ID=mRNA_15764|Name=jgi.p|Trimin1|133941|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=471bp|location=Sequence derived from alignment at Contig_203:118972..120115- (Tribonema minus UTEX_B_3156 )back to top |