mRNA_15764 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133941
Unique NamemRNA_15764
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|133941 vs. uniprot
Match: A0A835Z4C0_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4C0_9STRA)

HSP 1 Score: 328 bits (840), Expect = 7.540e-114
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1
Query:    1 AAPRRAPVERWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKTCHR 471
            AAPRRAPVERWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKTCHR
Sbjct:    1 AAPRRAPVERWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKTCHR 157          
BLAST of jgi.p|Trimin1|133941 vs. uniprot
Match: A0A835YK87_9STRA (Homeodomain-like protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK87_9STRA)

HSP 1 Score: 284 bits (727), Expect = 1.880e-96
Identity = 132/153 (86.27%), Postives = 140/153 (91.50%), Query Frame = 1
Query:   13 RAPVERWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKTCHR 471
            RAP +RWSPEED RL R V+ F  +NWRRISAVVGTKKAVQCMQRW+RSLRPDLKKGRWT EEDALLIELITQG KTW ELSNRI GRSAKQCRERWTHHL+PAVNKDVF PEEDW I+STQAA+GNRWSHIAAMLPGRTENAVK+RWKTCHR
Sbjct:   16 RAPAQRWSPEEDGRLTRAVETFDEKNWRRISAVVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQCRERWTHHLDPAVNKDVFAPEEDWLIISTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 168          
BLAST of jgi.p|Trimin1|133941 vs. uniprot
Match: A0A836C964_9STRA (Ternary protein-Dna Complex3 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C964_9STRA)

HSP 1 Score: 227 bits (579), Expect = 1.500e-74
Identity = 108/123 (87.80%), Postives = 114/123 (92.68%), Query Frame = 1
Query:  109 VVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQ--CRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKTCHR 471
            +VGTKKAVQCMQRW+RSLRPDLKKGRWT EEDALLIELITQG KTW ELSNRI GRSAKQ  CRERWTHHL+PAV+KD FT EEDW IVSTQAA+GNRWSHIAAMLPGRTENAVK+RWKTCHR
Sbjct:    1 LVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 123          
BLAST of jgi.p|Trimin1|133941 vs. uniprot
Match: A0A835Z2Q0_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Q0_9STRA)

HSP 1 Score: 191 bits (486), Expect = 4.340e-60
Identity = 85/142 (59.86%), Postives = 110/142 (77.46%), Query Frame = 1
Query:   31 WSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRW 456
            W+ +ED+RLR  V  F  ++W R +A VGTK A QCMQRW+R+L+PD++KGRW  EEDALL++L+T+G+ +W+E +  I GRSAKQCRERW HHL+PAV++  FTP ED  +V+ QAA GN W+ IAA LPGRTEN VK RW
Sbjct:    1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRW 142          
BLAST of jgi.p|Trimin1|133941 vs. uniprot
Match: D0NJN5_PHYIT (Myb-like DNA-binding protein, putative n=2 Tax=Phytophthora TaxID=4783 RepID=D0NJN5_PHYIT)

HSP 1 Score: 175 bits (443), Expect = 3.100e-52
Identity = 80/150 (53.33%), Postives = 107/150 (71.33%), Query Frame = 1
Query:   13 RAPVERWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKT 462
            +A  +RW+PEEDD+LR  V     RNW+ I+  V  +   QC+QRW + L P L KG W  EED LL EL+ +G K W +++ RI GR++KQCRERW +HL+P++ +  ++PEED  I+  QA +GNRWS IAAMLPGRTE+AVKIRWK+
Sbjct:   79 KAVPKRWTPEEDDKLREAVGRHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPEEDDLLKELVAEGRKNWGQVATRIPGRTSKQCRERWYNHLDPSIIRGEYSPEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 228          
BLAST of jgi.p|Trimin1|133941 vs. uniprot
Match: H3G911_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G911_PHYRM)

HSP 1 Score: 170 bits (430), Expect = 3.040e-51
Identity = 77/150 (51.33%), Postives = 107/150 (71.33%), Query Frame = 1
Query:   13 RAPVERWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKT 462
            +A  +RW+PEED++LR  V+    RNW+ I+  V  +   QC+QRW + L P L KG W  +ED LL EL+ +G K W +++ RI GR++KQCRERW +HL+P++ +  ++ EED  I+  QA +GNRWS IAAMLPGRTE+AVKIRWK+
Sbjct:    6 KAVPKRWTPEEDEKLREAVNRHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPDEDDLLKELVAEGRKNWGQVATRIPGRTSKQCRERWYNHLDPSIVRGEYSAEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 155          
BLAST of jgi.p|Trimin1|133941 vs. uniprot
Match: A0A6H5K458_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K458_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 4.480e-51
Identity = 81/148 (54.73%), Postives = 105/148 (70.95%), Query Frame = 1
Query:   28 RWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKTCHR 471
            RWSPEED+RLR  V+ +   +W+ I+A V T+  VQC+QRWK+ L P L KG+WT EED LL+ ++ +G+K W  LS R+ GR++KQCRERW HHL+P + K  +T EED  IVS Q  +GN+W+ IA  L GRTENA KIRWK   R
Sbjct:   70 RWSPEEDERLRAAVERYHGTSWKEIAAEVKTRNHVQCLQRWKKVLTPGLVKGQWTPEEDKLLVSIVNEGHKNWGSLSARVPGRTSKQCRERWCHHLDPRIVKGGWTEEEDQIIVSLQQQMGNKWAKIAQHLDGRTENATKIRWKILER 217          
BLAST of jgi.p|Trimin1|133941 vs. uniprot
Match: D8LM16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM16_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 6.950e-51
Identity = 79/148 (53.38%), Postives = 104/148 (70.27%), Query Frame = 1
Query:   28 RWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKTCHR 471
            RW P ED +L   V     ++W+ I+  VG++  VQC+QRWK+ LRP L KG+W  EEDA L++L T  +K W  LS  ++GR++KQCRERW HHL+P++NK  +T EED  I+ TQA +GNRWS IAA LPGRTEN++KIR K   R
Sbjct:  108 RWQPAEDKKLTLAVKESGEKDWKSIALKVGSRNHVQCLQRWKKVLRPGLVKGQWDAEEDAALMKLATAPFKNWGVLSQSMSGRTSKQCRERWCHHLDPSINKGAYTEEEDNIIIETQAELGNRWSQIAARLPGRTENSIKIRCKALQR 255          
BLAST of jgi.p|Trimin1|133941 vs. uniprot
Match: A0A7S2UU49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU49_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.880e-50
Identity = 77/148 (52.03%), Postives = 108/148 (72.97%), Query Frame = 1
Query:   28 RWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKTCHR 471
            +W+  ED+ LR  V  +   NW+ I+  VGT+  VQC+QRWK+ L+P L KG+W+  EDA L++L+ +G+K W +L+ ++ GR++KQCRERW+HHL+P+V K  +T EED TI+  Q+ +GN+WS IA  LPGRTENAVKIRWK   R
Sbjct:   29 KWTLVEDEELRHAVRKYGESNWKDIAREVGTRNHVQCLQRWKKVLKPGLVKGQWSALEDAKLVDLVGKGFKNWGQLAAQMPGRTSKQCRERWSHHLDPSVKKGEYTTEEDNTILRLQSELGNKWSEIAKHLPGRTENAVKIRWKALDR 176          
BLAST of jgi.p|Trimin1|133941 vs. uniprot
Match: A0A0W8DM41_PHYNI (Gamma-soluble NSF attachment protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DM41_PHYNI)

HSP 1 Score: 175 bits (444), Expect = 3.530e-50
Identity = 80/150 (53.33%), Postives = 107/150 (71.33%), Query Frame = 1
Query:   13 RAPVERWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKT 462
            +A  +RW+PEEDD+LR  V     RNW+ I+  V  +   QC+QRW + L P L KG W  EED LL EL+ +G K W +++ RI GR++KQCRERW +HL+P++ +  ++PEED  I+  QA +GNRWS IAAMLPGRTE+AVKIRWK+
Sbjct:  109 KAVPKRWTPEEDDKLREAVGRHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPEEDELLKELVAEGRKNWGQVATRIPGRTSKQCRERWYNHLDPSIVRGEYSPEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 258          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133941 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4C0_9STRA7.540e-114100.00Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A835YK87_9STRA1.880e-9686.27Homeodomain-like protein n=2 Tax=Tribonema minus T... [more]
A0A836C964_9STRA1.500e-7487.80Ternary protein-Dna Complex3 (Fragment) n=1 Tax=Tr... [more]
A0A835Z2Q0_9STRA4.340e-6059.86Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
D0NJN5_PHYIT3.100e-5253.33Myb-like DNA-binding protein, putative n=2 Tax=Phy... [more]
H3G911_PHYRM3.040e-5151.33Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6H5K458_9PHAE4.480e-5154.73MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LM16_ECTSI6.950e-5153.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2UU49_9STRA1.880e-5052.03Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A0W8DM41_PHYNI3.530e-5053.33Gamma-soluble NSF attachment protein n=1 Tax=Phyto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_203contigContig_203:118972..120115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133941|gw1.203.8.1
DescriptionMyb-like DNA-binding domain
COG categoryK
Max annot lvl4776|Peronosporales
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota,3Q8NP@4776|Peronosporales
Evalue5.78e-49
Seed ortholog4792.ETI46253
Hectar predicted targeting categoryother localisation
TranscriptId134263
TrackFilteredModels1
ProteinId133941
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133941gene_15764Tribonema minus UTEX_B_3156 geneContig_203 118972..120115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133941Trimin1|133941|gw1.203.8.1Tribonema minus UTEX_B_3156 polypeptideContig_203 118972..120115 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15764_3exon_15764_3Tribonema minus UTEX_B_3156 exonContig_203 118972..119034 -
exon_15764_2exon_15764_2Tribonema minus UTEX_B_3156 exonContig_203 119374..119601 -
exon_15764_1exon_15764_1Tribonema minus UTEX_B_3156 exonContig_203 119936..120115 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15764CDS_15764Tribonema minus UTEX_B_3156 CDSContig_203 119936..120115 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15764 ID=mRNA_15764|Name=jgi.p|Trimin1|133941|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=471bp|location=Sequence derived from alignment at Contig_203:118972..120115- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCTGCGCCGCGTCGGGCTCCTGTCGAGCGTTGGAGTCCAGAGGAGGACGA
CAGACTCAGGCGCGGCGTCGACATGTTCGCAGCCAGGAACTGGCGTCGCA
TCAGCGCTGTGGTGGGCACCAAGAAGGCTGTCCAGTGTATGCAACGATGG
AAGCGCAGCCTTCGGCCTGACCTCAAGAAGGGACGCTGGACGCAGGAGGA
GGACGCCCTCTTGATCGAGCTGATAACACAAGGGTACAAGACATGGGCCG
AGCTCTCCAACAGGATCGCTGGGCGGAGTGCGAAGCAATGCAGAGAGAGG
TGGACGCACCACCTGAACCCCGCCGTCAACAAGGACGTGTTCACGCCCGA
GGAAGACTGGACCATCGTTTCCACCCAGGCCGCCATTGGGAACCGCTGGA
GCCACATCGCCGCGATGCTGCCGGGCCGCACCGAAAACGCCGTCAAGATC
AGGTGGAAGACGTGCCACAGG
back to top

protein sequence of jgi.p|Trimin1|133941

>Trimin1|133941|gw1.203.8.1 ID=Trimin1|133941|gw1.203.8.1|Name=jgi.p|Trimin1|133941|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=157bp
AAPRRAPVERWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRW
KRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRER
WTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKI
RWKTCHR
back to top

mRNA from alignment at Contig_203:118972..120115-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15764 ID=mRNA_15764|Name=jgi.p|Trimin1|133941|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1144bp|location=Sequence derived from alignment at Contig_203:118972..120115- (Tribonema minus UTEX_B_3156 )
GCTGCGCCGCGTCGGGCTCCTGTCGAGCGTTGGAGTCCAGAGGAGGACGA CAGACTCAGGCGCGGCGTCGACATGTTCGCAGCCAGGAACTGGCGTCGCA TCAGCGCTGTGGTGGGCACCAAGAAGGCTGTCCAGTGTATGCAACGATGG AAGCGCAGCCTTCGGCCTGACCTCAAGAAGGTGAGGCGGCATTTATCGTA CTGCTAGCTACATCACTAACCTGCTGCGCTGCAGTGCTTCCCAGTGCTGC AAACGCGATCAACTTTGGTATTGGCTGGGTACACAACCTTGTTCTCTGAA CTTGCGCTGTCTGTTTGCACGTACTACAGTAAAGTGTGGCACAGCGTCCC GCCGCTGTTCCGGCTCCGCTCCACTTACTAAGTAGTACTGTAACAGATGC TCTTGACTAAGTCGTACGCCCTATGTGCATCTTTGACAAGCCTTGAAGCT CGACGACGACAGTCACTGCAGACCCTAGACTAAGGCTCTCTGCCCCCTCT TCCCTGCACACCAGGGACGCTGGACGCAGGAGGAGGACGCCCTCTTGATC GAGCTGATAACACAAGGGTACAAGACATGGGCCGAGCTCTCCAACAGGAT CGCTGGGCGGAGTGCGAAGCAATGCAGAGAGAGGTGGACGCACCACCTGA ACCCCGCCGTCAACAAGGACGTGTTCACGCCCGAGGAAGACTGGACCATC GTTTCCACCCAGGCCGCCATTGGGAACCGCTGGAGCCACATCGTGAGTAC TACGGACTTTTCTTTGAGAAAACATCAAGTTGCACACATCATGATGCAGT ATACTATAGTCAATGACAGTTACTGTGTAATGACTCATTGACAATGAATT CAATTTGTCAATGACATTTGCTCCAGCCTGAGTCGGAGGTCCAGGACCTG TCGTCTGTCGTGTACCCCCCTTGAGGATGATGTGATGATAATCATCAACA TTGTCATTCAAATTTCACATTGTTGCTCAACACACTGTGGCACATGCTTC AAAGTTTGAGGTCCTGGGACTGAACGCTCAATGATGACATCACACGCTGT TGTTGCTTGCTGCCGGCAATTGCGCTGCCAGGCCGCGATGCTGCCGGGCC GCACCGAAAACGCCGTCAAGATCAGGTGGAAGACGTGCCACAGG
back to top

Coding sequence (CDS) from alignment at Contig_203:118972..120115-

>mRNA_15764 ID=mRNA_15764|Name=jgi.p|Trimin1|133941|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=471bp|location=Sequence derived from alignment at Contig_203:118972..120115- (Tribonema minus UTEX_B_3156 )
GCTGCGCCGCGTCGGGCTCCTGTCGAGCGTTGGAGTCCAGAGGAGGACGA
CAGACTCAGGCGCGGCGTCGACATGTTCGCAGCCAGGAACTGGCGTCGCA
TCAGCGCTGTGGTGGGCACCAAGAAGGCTGTCCAGTGTATGCAACGATGG
AAGCGCAGCCTTCGGCCTGACCTCAAGAAGGGACGCTGGACGCAGGAGGA
GGACGCCCTCTTGATCGAGCTGATAACACAAGGGTACAAGACATGGGCCG
AGCTCTCCAACAGGATCGCTGGGCGGAGTGCGAAGCAATGCAGAGAGAGG
TGGACGCACCACCTGAACCCCGCCGTCAACAAGGACGTGTTCACGCCCGA
GGAAGACTGGACCATCGTTTCCACCCAGGCCGCCATTGGGAACCGCTGGA
GCCACATCGCCGCGATGCTGCCGGGCCGCACCGAAAACGCCGTCAAGATC
AGGTGGAAGACGTGCCACAGG
back to top