mRNA_15750 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|40132
Unique NamemRNA_15750
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|40132 vs. uniprot
Match: A0A835Z2Z9_9STRA (L51_S25_CI-B8 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Z9_9STRA)

HSP 1 Score: 187 bits (474), Expect = 6.150e-58
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 3 
Query:   87 MSWRAGIGRQLREVMVCLAVQGDGASAGVRNWCLRRTAEIKMLNPNFPFFLREGDSIDPFMVVEFDWGKQQVVDLSNLTEKQVDDALKQA 356
            MSWRAGIGRQLREVMVCLAVQGDGASAGVRNWCLRRTAEIKMLNPNFPFFLREGDSIDPFMVVEFDWGKQQVVDLSNLTEKQVDDALKQA
Sbjct:    1 MSWRAGIGRQLREVMVCLAVQGDGASAGVRNWCLRRTAEIKMLNPNFPFFLREGDSIDPFMVVEFDWGKQQVVDLSNLTEKQVDDALKQA 90
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BLAST of jgi.p|Trimin1|40132 vs. uniprot
Match: Q1ZXN5_DICDI (L51_S25_CI-B8 domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q1ZXN5_DICDI)

HSP 1 Score: 77.4 bits (189), Expect = 1.180e-14
Identity = 32/89 (35.96%), Postives = 59/89 (66.29%), Query Frame = 3 
Query:   87 MSWRAGIGRQLREVMVCLAVQGDGASAGVRNWCLRRTAEIKMLNPNFPFFLREGDSIDPFMVVEFDWGKQQVVDLSNLTEKQVDDALKQ 353
            MSWRA +   L+E+ +    Q + +S G+RN+ ++  +++K LNP  P  +REG  ++P +   +DWGK++   ++NLTE++V++ LK+
Sbjct:    1 MSWRALLSHNLQEIRITFC-QSNQSSEGLRNFVVKNYSDLKRLNPKLPLLIREGHGVEPVIYARYDWGKEEKKVVTNLTEQEVEEKLKE 88
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BLAST of jgi.p|Trimin1|40132 vs. uniprot
Match: F0Z8R4_DICPU (L51_S25_CI-B8 domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0Z8R4_DICPU)

HSP 1 Score: 75.5 bits (184), Expect = 7.770e-14
Identity = 32/89 (35.96%), Postives = 57/89 (64.04%), Query Frame = 3 
Query:   87 MSWRAGIGRQLREVMVCLAVQGDGASAGVRNWCLRRTAEIKMLNPNFPFFLREGDSIDPFMVVEFDWGKQQVVDLSNLTEKQVDDALKQ 353
            MSWRA +   LRE+ +    Q + +S G+RN+ +    ++K LNP  P  +REG  I+P +   +DWG+++   ++NL+E++V++ LK+
Sbjct:   10 MSWRALLSHNLREIRITFC-QSNKSSEGLRNFVVNNYTDLKRLNPKLPLLIREGHGIEPTIYARYDWGEEEKTVVTNLSEQEVEEKLKE 97
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BLAST of jgi.p|Trimin1|40132 vs. uniprot
Match: A0A151Z8C2_9MYCE (L51_S25_CI-B8 domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z8C2_9MYCE)

HSP 1 Score: 76.6 bits (187), Expect = 7.980e-14
Identity = 34/89 (38.20%), Postives = 58/89 (65.17%), Query Frame = 3 
Query:   87 MSWRAGIGRQLREVMVCLAVQGDGASAGVRNWCLRRTAEIKMLNPNFPFFLREGDSIDPFMVVEFDWGKQQVVDLSNLTEKQVDDALKQ 353
            MSWRA +   L+E+ +    Q   +S G+RN+ ++  ++IK LNP  PF +RE   I+P +   +DWGK++   ++NLTE++V++ LK+
Sbjct:   54 MSWRALLSHNLQEIRIHFC-QSAQSSEGLRNFVVKNYSDIKKLNPKLPFLIREAHGIEPVIYARYDWGKEEKKVVTNLTEQEVEEKLKE 141
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BLAST of jgi.p|Trimin1|40132 vs. uniprot
Match: A0A8J4PJJ9_9MYCE (L51_S25_CI-B8 domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PJJ9_9MYCE)

HSP 1 Score: 71.2 bits (173), Expect = 2.560e-12
Identity = 32/91 (35.16%), Postives = 57/91 (62.64%), Query Frame = 3 
Query:   87 MSWRAGIGRQLREVMV--CLAVQGDGASAGVRNWCLRRTAEIKMLNPNFPFFLREGDSIDPFMVVEFDWGKQQVVDLSNLTEKQVDDALKQ 353
            MSWRA +   L+E+ +  C   Q   +S G+RN+ ++   ++K LNP  P  +RE   I+P +   +DWGK++   ++NL+E++V++ LK+
Sbjct:    1 MSWRALLSHNLQEIRIHFCTTTQ---SSEGLRNFVVKNYTDLKRLNPKLPLLIREAHGIEPVIYARYDWGKEEKKIVTNLSEQEVEEKLKE 88
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BLAST of jgi.p|Trimin1|40132 vs. uniprot
Match: F4PQ87_CAVFA (Putative NADH dehydrogenase n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PQ87_CAVFA)

HSP 1 Score: 69.7 bits (169), Expect = 9.770e-12
Identity = 30/89 (33.71%), Postives = 55/89 (61.80%), Query Frame = 3 
Query:   87 MSWRAGIGRQLREVMVCLAVQGDGASAGVRNWCLRRTAEIKMLNPNFPFFLREGDSIDPFMVVEFDWGKQQVVDLSNLTEKQVDDALKQ 353
            MSWRA +   L+E+ +    Q   +S G+RN+  +   ++K LNP  P  +RE   I+P +   +DWG+++   ++NL+E++V++ LK+
Sbjct:    1 MSWRALLSHNLQEIRIHFCQQAQ-SSEGLRNFITKNYTDLKRLNPKLPLMVREAHGIEPVIYARYDWGQEEKKVVTNLSEQEVEEKLKE 88
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BLAST of jgi.p|Trimin1|40132 vs. uniprot
Match: A0A6B2LRF9_9EUKA (L51_S25_CI-B8 domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LRF9_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 5.890e-8
Identity = 29/89 (32.58%), Postives = 52/89 (58.43%), Query Frame = 3 
Query:   87 MSWRAGIGRQLREVMVCLAVQGDGASAGVRNWCLRRTAEIKMLNPNFPFFLREGDSIDPFMVVEFDWGKQQVVDLSNLTEKQVDDALKQ 353
            MSW A     +RE+ + L      +S+G R +       IK LNP  PF++R   +++P +V  +D+G + + DL++L++KQV + +K+
Sbjct:    1 MSWIARASTNMREMRLILC-HASASSSGARKFLDTHYPTIKRLNPQLPFYVRHYPNVEPRLVARYDYGGEAMRDLTDLSDKQVYEKMKE 88
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BLAST of jgi.p|Trimin1|40132 vs. uniprot
Match: A0A3M6UPT7_POCDA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 n=3 Tax=Scleractinia TaxID=6125 RepID=A0A3M6UPT7_POCDA)

HSP 1 Score: 56.6 bits (135), Expect = 4.040e-7
Identity = 30/90 (33.33%), Postives = 50/90 (55.56%), Query Frame = 3 
Query:   84 AMSWRAGIGRQLREVMVCLAVQGDGASAGVRNWCLRRTAEIKMLNPNFPFFLREGDSIDPFMVVEFDWGKQQVVDLSNLTEKQVDDALKQ 353
            A +WR+ +G+ +RE+ + L  Q   +S GVR++  +    IK  NP  P  +RE   I P M   +D GK+  V L+N++   V  A+++
Sbjct:    2 AAAWRSNLGKHVREIRIHLC-QKSHSSQGVRDFLEKYYIGIKKENPKVPILVRECSGIQPKMYARYDHGKENSVQLNNMSGDSVLQAMEK 90
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BLAST of jgi.p|Trimin1|40132 vs. uniprot
Match: A0A6A6V8C0_9PLEO (NADH-ubiquinone oxidoreductase-like protein 105 kDa subunit n=1 Tax=Sporormia fimetaria CBS 119925 TaxID=1340428 RepID=A0A6A6V8C0_9PLEO)

HSP 1 Score: 53.1 bits (126), Expect = 7.160e-6
Identity = 29/84 (34.52%), Postives = 46/84 (54.76%), Query Frame = 3 
Query:   87 MSWRAGIGRQLREVMVCLAVQGDGASAGVRNWCLRRTAEIKMLNPNFPFFLREGDSIDPFMVVEFDWGKQQVVDLSNLTEKQVD 338
            M+ +    + L+EV       GD ASA VRN+  R    +K  NP+ P  LRE    +P +   FD+GK+++V L  L +K+++
Sbjct:    1 MASKYAFAQGLKEVRFLFCQTGD-ASAPVRNFLTRSYPTMKKHNPHTPIMLREAAGTEPKVYARFDFGKEKMVPLKGLGDKEIE 83
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|40132 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A835Z2Z9_9STRA6.150e-58100.00L51_S25_CI-B8 domain-containing protein n=1 Tax=Tr... [more]
Q1ZXN5_DICDI1.180e-1435.96L51_S25_CI-B8 domain-containing protein n=1 Tax=Di... [more]
F0Z8R4_DICPU7.770e-1435.96L51_S25_CI-B8 domain-containing protein n=1 Tax=Di... [more]
A0A151Z8C2_9MYCE7.980e-1438.20L51_S25_CI-B8 domain-containing protein n=1 Tax=Ti... [more]
A0A8J4PJJ9_9MYCE2.560e-1235.16L51_S25_CI-B8 domain-containing protein n=1 Tax=Po... [more]
F4PQ87_CAVFA9.770e-1233.71Putative NADH dehydrogenase n=1 Tax=Cavenderia fas... [more]
A0A6B2LRF9_9EUKA5.890e-832.58L51_S25_CI-B8 domain-containing protein n=1 Tax=Ar... [more]
A0A3M6UPT7_POCDA4.040e-733.33NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A6A6V8C0_9PLEO7.160e-634.52NADH-ubiquinone oxidoreductase-like protein 105 kD... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_203contigContig_203:36279..38770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|40132|CE40131_838
KEGG TC3.D.1.6
BRITEko00000,ko00001,ko00002
KEGG ModuleM00146
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG koko:K03946
DescriptionMitochondrial ribosomal protein L51 / S25 / CI-B8 domain
COG categoryC
Max annot lvl554915|Amoebozoa
EggNOG OGsKOG3446@1|root,KOG3446@2759|Eukaryota,3XHGG@554915|Amoebozoa
Evalue1.59e-16
Seed ortholog44689.DDB0233223
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2
Ec32 orthologEc-10_001380.1
TranscriptId40454
TrackFilteredModels1
ProteinId40132
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|40132gene_15750Tribonema minus UTEX_B_3156 geneContig_203 36279..38770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|40132Trimin1|40132|CE40131_838Tribonema minus UTEX_B_3156 polypeptideContig_203 36365..37775 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15750_1exon_15750_1Tribonema minus UTEX_B_3156 exonContig_203 36279..36453 +
exon_15750_2exon_15750_2Tribonema minus UTEX_B_3156 exonContig_203 37262..37439 +
exon_15750_3exon_15750_3Tribonema minus UTEX_B_3156 exonContig_203 37770..38010 +
exon_15750_4exon_15750_4Tribonema minus UTEX_B_3156 exonContig_203 38689..38770 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_15750UTR5_15750Tribonema minus UTEX_B_3156 five_prime_UTRContig_203 36279..36364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15750CDS_15750Tribonema minus UTEX_B_3156 CDSContig_203 36365..36453 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15750UTR3_15750Tribonema minus UTEX_B_3156 three_prime_UTRContig_203 37776..38010 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15750 ID=mRNA_15750|Name=jgi.p|Trimin1|40132|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=676bp|location=Sequence derived from alignment at Contig_203:36279..38770+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGGTGTCGCTAGCGCGCGGTGACTTTTTCGGAGACGACGGCGGCAATAGC
TCCTAGTGACCCCACAGTACAGGTTGCGCAGGTGCCATGAGTTGGAGAGC
GGGCATCGGCAGGCAATTGAGGGAGGTGATGGTATGCCTGGCGGTGCAGG
GCGATGGTGCCAGCGCTGGAGTGCGCAACTGGTGCCTGCGGCGGACCGCC
GAGATCAAGATGCTCAACCCGAACTTCCCCTTCTTCCTGCGCGAGGGCGA
CTCCATCGACCCCTTCATGGTCGTCGAGTTTGACTGGGGGAAGCAGCAGG
TCGTGGACCTGTCCAACCTCACGGAGAAGCAGGTGGACGACGCGTTGAAG
CAGGCGTGACGCACCGCCACTGCCGCCGCCGCCGCCGTCGCAACTGCAGA
TCGTGGTGGACGCCATGAAGGACCCGGAGTACCAGCGCGAGCGCGAGCCG
CGCGTGGCGCCGTGGCTGCGGCGGCCCGTGGACGTGATCGATGAGATCGG
GCGCAACACGCCGCGCATCGCGCTCAAGATGCCCTCCAACAGCCAGTACA
CGGAGGAGGAGAGGAAGGCGGCCGCGGAGAGGCTGGAGGCCATGCTGGAC
GCGGAGGTGGAGGCGTCAGAGAAGGAGGCCAAGCGGCTGGAACGCAAGGC
CAACCGCAAGTTCACCGCGTCATGAG
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protein sequence of jgi.p|Trimin1|40132

>Trimin1|40132|CE40131_838 ID=Trimin1|40132|CE40131_838|Name=jgi.p|Trimin1|40132|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=91bp
MSWRAGIGRQLREVMVCLAVQGDGASAGVRNWCLRRTAEIKMLNPNFPFF
LREGDSIDPFMVVEFDWGKQQVVDLSNLTEKQVDDALKQA*
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mRNA from alignment at Contig_203:36279..38770+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15750 ID=mRNA_15750|Name=jgi.p|Trimin1|40132|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2492bp|location=Sequence derived from alignment at Contig_203:36279..38770+ (Tribonema minus UTEX_B_3156 )
GGGTGTCGCTAGCGCGCGGTGACTTTTTCGGAGACGACGGCGGCAATAGC
TCCTAGTGACCCCACAGTACAGGTTGCGCAGGTGCCATGAGTTGGAGAGC
GGGCATCGGCAGGCAATTGAGGGAGGTGATGGTATGCCTGGCGGTGCAGG
GCGATGGTGCCAGCGCTGGAGTGCGGTGAGTGCTGATGTTTGTTGACATC
ACTGCCATGATAATGACTAGCTTATCACTGCACTTTCATTGTCGAGGATG
AAGGACTGGCAAACAAAGTTTGCTTGCAAACACAGCGGATCTCTATGCGA
CCTTGCCAACGTGGTGGATCATTCGTGACATCTACGGATACGAAGCCCCT
TGTTACCACAACTTAATGCTTTGTGTTCCCTTAGCCAATTGCACGCCAGC
AATGGGTTGTCAGATACATGTAGTAGCGCTCGCCACTTGCGAGTAGAGCA
GAGGAAGCTTACGAACTTGATGACAGCAGTAGCAGCATCAGTACTATGCT
GCTGTGCCCTGCACATTCAAGCTGGGACAGTATTCCATTGACATTACCGC
AGACAGGCGGCTACACAGTGCGCTACCAGTTGTTGTTTCCGTTACGCCTC
AACATGCTTGACAGGCTGCACCTCGCACGCCGAAGCGTGCACAGGCCACG
CAGTAACCTCCCTGCCCAAGCCAGCGCAAAACAACAAGTGTGCATGTGCA
CACTGCGGCACAGTGGCATCGCTCAGCAGGAAGCATGCCACGGCACTGCT
TCACAGTACACCCTGCCCCAATTCGCCGGAACTGTCACGCGGCGCCGCAA
AGTCAAGCGGCATGTGCTGCGGACCATCGTGCGCAAAATGCCGGAGGCAA
CACGCAAACATGCTCACGCATACGCATGCGCACCCACTCCCACTATGCCG
ATACCATTGACTTACACTTTCATGAGCGTGATGGCATGCTCACGTTCGAT
GCCGCCCCGTCCGCTGTGGCGCCGCCCGCGCAGCAACTGGTGCCTGCGGC
GGACCGCCGAGATCAAGATGCTCAACCCGAACTTCCCCTTCTTCCTGCGC
GAGGGCGACTCCATCGACCCCTTCATGGTCGTCGAGTTTGACTGGGGGAA
GCAGCAGGTCGTGGACCTGTCCAACCTCACGGAGAAGCAGGTGGACGACG
CGTTGAAGCAGGTGAGCAGCGCTCAGCATTGCTGGCGCGGAGCGTCATGG
CCTCTCAAAGCGCGCTCGCCGGTGGAAGGCCAGGCACTCAGCATATGGAT
GTCTCTGTGCGAGGCGAGAAGCGGTCATTTGCACCGCGTCACGGCGCATC
GGCGGTGTGTAGTTCCTCTGTGCGCCAGCAGGCTGTCTCGCCCTCATCTG
CCCGCTGCGATCGCTGTGACCAGCCCAACGGGGGAATGCGCTGCATACCA
GAGCGCTTTCACGCGCGTGCATTCCCTGCGGCAGACCTGAGCGCTGCCAC
AAACCCCCGCATCGCTCAGCAACAACGCTCAGCCCCCGCAGGCGTGACGC
ACCGCCACTGCCGCCGCCGCCGCCGTCGCAACTGCAGATCGTGGTGGACG
CCATGAAGGACCCGGAGTACCAGCGCGAGCGCGAGCCGCGCGTGGCGCCG
TGGCTGCGGCGGCCCGTGGACGTGATCGATGAGATCGGGCGCAACACGCC
GCGCATCGCGCTCAAGATGCCCTCCAACAGCCAGTACACGGAGGAGGAGA
GGAAGGCGGCCGCGGAGAGGCTGGAGGCCATGGTGTGCGCTGCTACTGCT
GCTGTTGCTACTGCTTGAAGTGGTACTTGCAGTTGTTGTTGAAGTTGAGG
TGGTTTTGGCGCCGATGGCTAGGCGAAAGTGCTCATTTATGGCTCATGTC
GGCGGCGGCTGCACCTCGCTAGTTTTATGATGTTGGAGCTTGTTGGCATG
GTGGAGCATGTTACAGAGCAGCAAGGCCATGAGAACCTGTTGCCCTCACC
TGACCGCACTACTGCCTGTAGCCCAAACTCCGCGGAAGGCGGCGTCACAG
AGGCACGCCTGACACAGCTGCGTGCCGCAGATTCGAATGCGAGTCAGCAC
ATGCGACTTGCCCACAAGGCACCCAGGCACGCATTGCGCGCAGCAGCATC
AGACTCACATAGTGGACGCGTGTCGTGAGGGCAGGAGCAAGCCCACGCCT
GGTCGTTGCCGCCCAGAAACGCACCTCGCCATGGGCACCGCACGCGCTCA
TTGACACCATGCACAGAACTCGCAGCGCTCTAACAGACACACATGCTGCG
AAGTAAGTACAGGCATCCTCACACGCCGCCATGCCATGCAGCACCTCAAC
GCCCTATTGACGTTGGTCCCCCGCTTCACGCTGCATTCCTGTGAGCGCGC
CGTCTGCGGCACTGCGTAACTCATACTGGCGCCGCCTGCCCGCCTCGTGC
GCGCGTGCAGCTGGACGCGGAGGTGGAGGCGTCAGAGAAGGAGGCCAAGC
GGCTGGAACGCAAGGCCAACCGCAAGTTCACCGCGTCATGAG
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Coding sequence (CDS) from alignment at Contig_203:36279..38770+

>mRNA_15750 ID=mRNA_15750|Name=jgi.p|Trimin1|40132|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=273bp|location=Sequence derived from alignment at Contig_203:36279..38770+ (Tribonema minus UTEX_B_3156 )
ATGAGTTGGAGAGCGGGCATCGGCAGGCAATTGAGGGAGGTGATGGTATG
CCTGGCGGTGCAGGGCGATGGTGCCAGCGCTGGAGTGCGCAACTGGTGCC
TGCGGCGGACCGCCGAGATCAAGATGCTCAACCCGAACTTCCCCTTCTTC
CTGCGCGAGGGCGACTCCATCGACCCCTTCATGGTCGTCGAGTTTGACTG
GGGGAAGCAGCAGGTCGTGGACCTGTCCAACCTCACGGAGAAGCAGGTGG
ACGACGCGTTGAAGCAGGCGTGA
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