mRNA_1573 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158030
Unique NamemRNA_1573
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|158030 vs. uniprot
Match: A0A835Z1H0_9STRA (TUP1-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1H0_9STRA)

HSP 1 Score: 612 bits (1577), Expect = 4.430e-219
Identity = 370/370 (100.00%), Postives = 370/370 (100.00%), Query Frame = 1 
Query:    1 SGKDARRPAVELEGCLSLGSVVCCVRFSPDGSRLATGSHGCVKVFDVATGCSPAPPSPPPLVPLPPPKDPYVRSVCMSPDGERVAAVMENNSARVLSLMEDGPAPLDLVGHQSEVYSLDWVGALIATGSGDCQVRVWDSNSGACRMVLGDSRGPTDGVTCVAFRPDGSLIAAASIDTTVHVWATADGGLLYRLDSHTESXXXXXXXXXXXXXXXXXXXXXXXXXRLGRGAPPAQPPVPVALSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTAVQRRAVVLAGFQNSIIGVGTCPNQRLFATGGGDKVVCLWRYTEAEDREAQPQQQQVRQVGSLRSGSCLLKFAVDKSSRTVEALLNFAGVFETHGA 1110
            SGKDARRPAVELEGCLSLGSVVCCVRFSPDGSRLATGSHGCVKVFDVATGCSPAPPSPPPLVPLPPPKDPYVRSVCMSPDGERVAAVMENNSARVLSLMEDGPAPLDLVGHQSEVYSLDWVGALIATGSGDCQVRVWDSNSGACRMVLGDSRGPTDGVTCVAFRPDGSLIAAASIDTTVHVWATADGGLLYRLDSHTESXXXXXXXXXXXXXXXXXXXXXXXXXRLGRGAPPAQPPVPVALSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTAVQRRAVVLAGFQNSIIGVGTCPNQRLFATGGGDKVVCLWRYTEAEDREAQPQQQQVRQVGSLRSGSCLLKFAVDKSSRTVEALLNFAGVFETHGA
Sbjct:    1 SGKDARRPAVELEGCLSLGSVVCCVRFSPDGSRLATGSHGCVKVFDVATGCSPAPPSPPPLVPLPPPKDPYVRSVCMSPDGERVAAVMENNSARVLSLMEDGPAPLDLVGHQSEVYSLDWVGALIATGSGDCQVRVWDSNSGACRMVLGDSRGPTDGVTCVAFRPDGSLIAAASIDTTVHVWATADGGLLYRLDSHTESXXXXXXXXXXXXXXXXXXXXXXXXXRLGRGAPPAQPPVPVALSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTAVQRRAVVLAGFQNSIIGVGTCPNQRLFATGGGDKVVCLWRYTEAEDREAQPQQQQVRQVGSLRSGSCLLKFAVDKSSRTVEALLNFAGVFETHGA 370
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BLAST of jgi.p|Trimin1|158030 vs. uniprot
Match: D8LEC5_ECTSI (Tup_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC5_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 5.900e-59
Identity = 141/359 (39.28%), Postives = 179/359 (49.86%), Query Frame = 1 
Query:   25 AVELEGCLSLGSVVCCVRFSPDGSRLATGSHGCVKVFDVATG-----CSPAPPSPPPLVPLPPPKDPYVRSVCMSPDGERVAAVMENNSARVLSLMEDG--PAPLDLVGHQSEVYSLDWVGALIATGSGDCQVRVWDSNSGACRMVLGDSRGPTDGVTCVAFRPDGSLIAAASIDTTVHVWATADGGLLYRLDSHTESXXXXXXXXXXXXXXXXXXXXXXXXXR-----LGRGAPPAQPPVPVAL-SGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTAVQRRAVVLAGFQNSIIGVGTCPNQRLFATGGGDKVVCLWRYTEAEDREAQPQQQQVRQVGSLRSGSCLLKFAVDKSSRT 1062
            AVEL     L SVVCCVRFS DG+++A GSH CVKVFDV +      C                 DPYVR+VC SPDG  + A ME NSA+VL L E+G     + L GH+SEVYSLDWV  +IA+GSGD ++R+WDS +GAC+  LGD  GP DGVT V  R D +++AAASID  VHVW+T    +L+RLD H+ES                               LG G+     P    L  G                             D  + +R   + GF+NS+IGV   P   +FATG GD +VC+W Y + +D   Q +   V    S RS S        +SSR+
Sbjct:  475 AVELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNSFKQLYVCRKQVQEEQGAPQTADGGDPYVRAVCFSPDGLSIVAGMEKNSAKVLVLEEEGGRQGAITLSGHESEVYSLDWVSDMIASGSGDGRIRLWDSVTGACKASLGDMGGPQDGVTSVVLRQDTTMVAAASIDRVVHVWSTQTHKILHRLDGHSESVYAITFSADGNRLVSGGLDKTIKASAEMVWDLGPGSEGRLSPQAKTLPGGHKDYVLSVCFSQDGKYIISGSKDRSVTMWDARLMKRVATITGFKNSVIGVSASPFNSMFATGSGDNLVCVWNYGDRDDYRRQSESA-VAPASSGRSSSAEKPRPPSRSSRS 832
[Close]
BLAST of jgi.p|Trimin1|158030 vs. uniprot
Match: A0A6G0XPL3_9STRA (Tup_N domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPL3_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.810e-43
Identity = 165/319 (51.72%), Postives = 208/319 (65.20%), Query Frame = 1 
Query:   10 DARRPAVELEGCLSLGSVVCCVRFSPDGSRLATGSHGCVKVFDVATGCSPAPPSPPPLV----PLPPPKDPYVRSVCMSPDGERVAAVMENNSARVLSLMEDGPAPLDLVGHQSEVYSLDWVGALIATGSGDCQVRVWDSNSGACRMVLG-DSRGPTDGVTCVAFRPDGSLIAAASIDTTVHVWATADGGLLYRLDSHTESXXXXXXXXXXXXXXXXXXXXXXXXXRLGR-GAPPAQPPVPVALSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTAVQRRAVVLAGFQNSIIGVGTCPNQRLFATGGGDKVVCLWRY 948
            D  RP VE+   L   SVVCCVRFS DG++LA+G H   +VFDV TG        P +     P    +D YVR+VC SPDG+++ A M  N+ R+  +  +  AP  LVGH +E+YSLD+V   I +GSGD +VR+WD+ +G C+ + G +S GP DGVT VA  PDG L+AAAS+D  V +W T    L+ RL+ H   XXXXXXXXXXXXXXXXXXXXXXXXX +   G    +P +      XXXXXXXXXXXXXXXXXXXXXXXXXXXX  TA  R  + ++G++NS+I V + P    FATG GD   C+W+Y
Sbjct:  442 DPERPVVEMFHTLDHQSVVCCVRFSADGTKLASGCHKTAQVFDVQTGARTFWVQRPAVSGNAQPANEAEDAYVRAVCFSPDGKKLVAGMPQNTIRIWDMESNEEAP-PLVGHDAEIYSLDYVNNFIVSGSGDRKVRLWDARTGQCQAIFGNESGGPADGVTNVALSPDGRLLAAASLDKVVRIWDTQTTQLMDRLEGHCXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSASGRTTTRPRMLFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRTA--RSVLTVSGYRNSVINVHSSPASPHFATGSGDCFACIWKY 757
[Close]
BLAST of jgi.p|Trimin1|158030 vs. uniprot
Match: A0A024UU52_9STRA (Tup_N domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UU52_9STRA)

HSP 1 Score: 169 bits (429), Expect = 2.530e-43
Identity = 94/198 (47.47%), Postives = 123/198 (62.12%), Query Frame = 1 
Query:   10 DARRPAVELEGCLSLGSVVCCVRFSPDGSRLATGSHGCVKVFDVATGCSP----APPSPPPLVPLPPPKDPYVRSVCMSPDGERVAAVMENNSARVLSLMEDGPAPLDLVGHQSEVYSLDWVGALIATGSGDCQVRVWDSNSGACRMVLG-DSRGPTDGVTCVAFRPDGSLIAAASIDTTVHVWATADGGLLYRLDSH 588
            D  RP VE+   L   SVVCCVRFS DG++LATG H   +VFDV TG        P       P    +D YVR+VC SPDG ++ A M  N+ R+  +  +  AP  L+GH +E+YSLD+VG  I +GSGD +VR+WD+ +G C+ V G +S GP+DGVT VA  PDG L+AAAS+D  V +W T    L+ RL+ H
Sbjct:  400 DTERPVVEMFHTLDHQSVVCCVRFSADGTKLATGCHKTAQVFDVQTGARTFWVQRPAIKETAAPANEAEDAYVRAVCFSPDGTKLVAGMPQNTIRIWDMASNEEAP-PLIGHDAEIYSLDYVGNHIVSGSGDRKVRLWDARTGQCQAVFGNESGGPSDGVTNVALSPDGRLLAAASLDKVVRIWDTQTTELMDRLEGH 596
[Close]
BLAST of jgi.p|Trimin1|158030 vs. uniprot
Match: A0A485LC03_9STRA (Aste57867_18943 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LC03_9STRA)

HSP 1 Score: 169 bits (428), Expect = 6.000e-43
Identity = 161/318 (50.63%), Postives = 206/318 (64.78%), Query Frame = 1 
Query:   10 DARRPAVELEGCLSLGSVVCCVRFSPDGSRLATGSHGCVKVFDVATGCSP----APPSPPPLVPLPPPKDPYVRSVCMSPDGERVAAVMENNSARVLSLMEDGPAPLDLVGHQSEVYSLDWVGALIATGSGDCQVRVWDSNSGACRMVLG-DSRGPTDGVTCVAFRPDGSLIAAASIDTTVHVWATADGGLLYRLDSHTESXXXXXXXXXXXXXXXXXXXXXXXXXRLGRGAPPAQPPVPVALSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTAVQRRAVVLAGFQNSIIGVGTCPNQRLFATGGGDKVVCLWRY 948
            +  RPAVE+   L   SVVCCVRFS DG++LA+G H   +VFDV TG        P +   +      +D YVR+VC SPDG ++ A M  N+ R+  +  +  AP  L+GH++E+YSLD+V   I +GSGD +VR+WD+ +G C+ + G +S GP DGVT VA  PDG L+AAAS+D  V +W T    L+ RL+ H   XXXXXXXXXXXXXXXXXXXXXXXXX +         P  +    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX     R  + ++G++NS+I V + P    FATG GD   C+W+Y
Sbjct:  488 EPERPAVEMFHTLDHQSVVCCVRFSADGTKLASGCHKTAQVFDVQTGARTFWVQRPANGANVTQANETEDAYVRAVCFSPDGTKLVAGMPQNTIRIWDMASNEEAP-PLIGHEAEIYSLDYVNNFIVSGSGDRKVRLWDARTGQCQAIFGNESGGPADGVTNVALSPDGRLLAAASLDKVVRIWDTQTTQLMDRLEGHCXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSASGRTTTRPRSL-FXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRTTRSVLTVSGYRNSVINVHSSPASPYFATGSGDCFACIWKY 803
[Close]
BLAST of jgi.p|Trimin1|158030 vs. uniprot
Match: A0A418BA83_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418BA83_9STRA)

HSP 1 Score: 169 bits (429), Expect = 8.350e-43
Identity = 94/198 (47.47%), Postives = 123/198 (62.12%), Query Frame = 1 
Query:   10 DARRPAVELEGCLSLGSVVCCVRFSPDGSRLATGSHGCVKVFDVATGCSP----APPSPPPLVPLPPPKDPYVRSVCMSPDGERVAAVMENNSARVLSLMEDGPAPLDLVGHQSEVYSLDWVGALIATGSGDCQVRVWDSNSGACRMVLG-DSRGPTDGVTCVAFRPDGSLIAAASIDTTVHVWATADGGLLYRLDSH 588
            D  RP VE+   L   SVVCCVRFS DG++LATG H   +VFDV TG        P       P    +D YVR+VC SPDG ++ A M  N+ R+  +  +  AP  L+GH +E+YSLD+VG  I +GSGD +VR+WD+ +G C+ V G +S GP+DGVT VA  PDG L+AAAS+D  V +W T    L+ RL+ H
Sbjct: 1219 DTERPVVEMFHTLDHQSVVCCVRFSADGTKLATGCHKTAQVFDVQTGARTFWVQRPAIKETAAPANEAEDAYVRAVCFSPDGTKLVAGMPQNTIRIWDMASNEEAP-PLIGHDAEIYSLDYVGNHIVSGSGDRKVRLWDARTGQCQAVFGNESGGPSDGVTNVALSPDGRLLAAASLDKVVRIWDTQTTELMDRLEGH 1415
[Close]
BLAST of jgi.p|Trimin1|158030 vs. uniprot
Match: A0A329SF69_9STRA (General transcriptional corepressor n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SF69_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.490e-42
Identity = 95/209 (45.45%), Postives = 127/209 (60.77%), Query Frame = 1 
Query:    1 SGKDARRPAVELEGCLSLGSVVCCVRFSPDGSRLATGSHGCVKVFDVATG------CSPAPPSPPPL----VPLPPPKDPYVRSVCMSPDGERVAAVMENNSARVLSLM--EDGPAPLDLVGHQSEVYSLDWVGALIATGSGDCQVRVWDSNSGACRMVLG-DSRGPTDGVTCVAFRPDGSLIAAASIDTTVHVWATADGGLLYRLDSH 588
            S +++ RPA E+   +   SVVCCVRFS DG+ +A+G H   +VFDV TG        PA     P          P D YVR+VC SPD  ++ A M  N+ RV  +   E+GPA   + GH+SE+YSLD+V  LI +GSGD +VR+WD+ +G C+ + G +S GP+DGVT VA  PDG L+AAAS+D  V +W T    LL RL+ H
Sbjct:  146 SYQESERPAAEMHQSMDHQSVVCCVRFSSDGTMMASGCHKTAQVFDVKTGDRKFLVSRPAGSGQTPTSQANAAANEPDDAYVRAVCFSPDCTKLVAGMPQNTIRVWDIASNEEGPA---MTGHESEIYSLDYVNDLIVSGSGDRKVRLWDARNGQCKKIFGNESGGPSDGVTSVALSPDGRLLAAASLDKVVRIWDTETAQLLDRLEGH 351
[Close]
BLAST of jgi.p|Trimin1|158030 vs. uniprot
Match: A0A067CVT3_SAPPC (Tup_N domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CVT3_SAPPC)

HSP 1 Score: 167 bits (423), Expect = 2.030e-42
Identity = 97/202 (48.02%), Postives = 127/202 (62.87%), Query Frame = 1 
Query:   10 DARRPAVELEGCLSLGSVVCCVRFSPDGSRLATGSHGCVKVFDVATGCS------PAPPSPPPLVPLPPPKDPYVRSVCMSPDGERVAAVMENNSARVLSLM--EDGPAPLDLVGHQSEVYSLDWVGALIATGSGDCQVRVWDSNSGACRMVLG-DSRGPTDGVTCVAFRPDGSLIAAASIDTTVHVWATADGGLLYRLDSH 588
            +  RP VE+   L   SVVCCVRFS DG+++A+G H   +VFDVATG        PA  +     P    +D YVRSVC SPDG ++ A M  N+ R+  +   E+GP    LVGH++E+YSLD+V  LI +GSGD +VR+WD+ SG CR V G ++ GP DGVT VA  PDG L+AAAS+D  V +W T    L+ RL+ H
Sbjct:  424 ETERPTVEMHHTLDHQSVVCCVRFSADGTKMASGCHKTAQVFDVATGARTFWVQRPAITNANGAQPNEN-EDAYVRSVCFSPDGTKLVAGMPQNTIRIWDIASNEEGPP---LVGHEAEIYSLDYVNNLIVSGSGDRKVRLWDARSGECRHVFGTETGGPADGVTNVALSPDGRLLAAASLDKVVRIWNTETSQLMDRLEGH 621
[Close]
BLAST of jgi.p|Trimin1|158030 vs. uniprot
Match: A0A0W8D732_PHYNI (Flavoprotein YCP4 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D732_PHYNI)

HSP 1 Score: 163 bits (413), Expect = 2.420e-41
Identity = 95/209 (45.45%), Postives = 126/209 (60.29%), Query Frame = 1 
Query:    1 SGKDARRPAVELEGCLSLGSVVCCVRFSPDGSRLATGSHGCVKVFDVATG------CSPAPPSPPPL----VPLPPPKDPYVRSVCMSPDGERVAAVMENNSARVLSLM--EDGPAPLDLVGHQSEVYSLDWVGALIATGSGDCQVRVWDSNSGACRMVLG-DSRGPTDGVTCVAFRPDGSLIAAASIDTTVHVWATADGGLLYRLDSH 588
            S +++ RPA E+   +   SVVCCVRFS DG+ +A+G H   +VFDV TG        PA     P          P D YVR+VC SPD  ++ A M  N+ RV  +   E+GPA   + GH+SE+YSLD+V  LI +GSGD +VR+WD  +G C+ + G +S GP+DGVT VA  PDG L+AAAS+D  V +W T    LL RL+ H
Sbjct:  361 SYQESERPAAEMHQSMDHQSVVCCVRFSSDGTMMASGCHKTAQVFDVKTGDRKFLVSRPAGSGQTPTSQANAAANEPDDAYVRAVCFSPDCSKLVAGMPQNTIRVWDIASNEEGPA---MTGHESEIYSLDYVNDLIVSGSGDRKVRLWDPRNGQCKKIFGNESGGPSDGVTSVALSPDGRLLAAASLDKVVRIWDTETAQLLDRLEGH 566
[Close]
BLAST of jgi.p|Trimin1|158030 vs. uniprot
Match: A0A484DZ53_BRELC (Tup_N domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZ53_BRELC)

HSP 1 Score: 163 bits (413), Expect = 4.280e-41
Identity = 94/209 (44.98%), Postives = 128/209 (61.24%), Query Frame = 1 
Query:    1 SGKDARRPAVELEGCLSLGSVVCCVRFSPDGSRLATGSHGCVKVFDVATG------CSPA----PPSPPPLVPLPPPKDPYVRSVCMSPDGERVAAVMENNSARVLSLM--EDGPAPLDLVGHQSEVYSLDWVGALIATGSGDCQVRVWDSNSGACRMVLG-DSRGPTDGVTCVAFRPDGSLIAAASIDTTVHVWATADGGLLYRLDSH 588
            S +++ RPA E+   +   SVVCCVRFS DG+ +A+G H   +VFDV TG        PA     P+         P D YVR+VC SPD  ++ A M  N+ R+  +   E+GPA   + GH+SE+YSLD+V  LI +GSGD +VR+WD+ +G C+ + G +S GP+DGVT VA  PDG L+AAAS+D  V +W T    LL RL+ H
Sbjct:  400 SYQESERPAAEMHQSMDHQSVVCCVRFSSDGTMMASGCHKTAQVFDVKTGDRKFLVSRPAGSGHTPTSQTNTAANEPDDAYVRAVCFSPDCTKLVAGMPQNTIRIWDIASNEEGPA---MTGHESEIYSLDYVNDLIVSGSGDRKVRLWDARNGQCKKIFGNESGGPSDGVTSVALSPDGRLLAAASLDKVVRIWDTETAQLLDRLEGH 605
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158030 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1H0_9STRA4.430e-219100.00TUP1-like protein (Fragment) n=1 Tax=Tribonema min... [more]
D8LEC5_ECTSI5.900e-5939.28Tup_N domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6G0XPL3_9STRA1.810e-4351.72Tup_N domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A024UU52_9STRA2.530e-4347.47Tup_N domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A485LC03_9STRA6.000e-4350.63Aste57867_18943 protein n=1 Tax=Aphanomyces stella... [more]
A0A418BA83_9STRA8.350e-4347.47Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A329SF69_9STRA1.490e-4245.45General transcriptional corepressor n=1 Tax=Phytop... [more]
A0A067CVT3_SAPPC2.030e-4248.02Tup_N domain-containing protein n=4 Tax=Saprolegni... [more]
A0A0W8D732_PHYNI2.420e-4145.45Flavoprotein YCP4 n=1 Tax=Phytophthora nicotianae ... [more]
A0A484DZ53_BRELC4.280e-4144.98Tup_N domain-containing protein n=1 Tax=Bremia lac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_4contigContig_4:336347..340436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158030|e_gw1.4.382.1
BRITEko00000,ko00001,ko03021,ko03036
KEGG Pathwayko04011,ko04111,ko04934,map04011,map04111,map04934
KEGG koko:K06666,ko:K14963
GOsGO:0000003,GO:0000122,GO:0000228,GO:0000429,GO:0000430,GO:0000433,GO:0000785,GO:0000790,GO:0000988,GO:0000989,GO:0001076,GO:0001191,GO:0001196,GO:0001198,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006355,GO:0006357,GO:0006950,GO:0006970,GO:0006996,GO:0007154,GO:0007155,GO:0007530,GO:0007531,GO:0007532,GO:0007584,GO:0008150,GO:0008289,GO:0009267,GO:0009372,GO:0009405,GO:0009605,GO:0009607,GO:0009628,GO:0009651,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010565,GO:0010570,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016458,GO:0016584,GO:0017053,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019747,GO:0019899,GO:0022414,GO:0022607,GO:0022610,GO:0030154,GO:0030447,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0032502,GO:0032879,GO:0032991,GO:0033554,GO:0033993,GO:0034728,GO:0035091,GO:0035690,GO:0035950,GO:0035952,GO:0035953,GO:0035955,GO:0036033,GO:0036166,GO:0036170,GO:0036171,GO:0036180,GO:0040007,GO:0040008,GO:0040029,GO:0042221,GO:0042304,GO:0042393,GO:0042493,GO:0042594,GO:0042826,GO:0043044,GO:0043156,GO:0043157,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044085,GO:0044111,GO:0044114,GO:0044115,GO:0044182,GO:0044403,GO:0044409,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044764,GO:0044877,GO:0045013,GO:0045014,GO:0045165,GO:0045814,GO:0045827,GO:0045833,GO:0045892,GO:0045893,GO:0045894,GO:0045926,GO:0045934,GO:0045935,GO:0045944,GO:0045990,GO:0046015,GO:0046677,GO:0046688,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051828,GO:0051832,GO:0051834,GO:0052173,GO:0060255,GO:0060258,GO:0061984,GO:0061985,GO:0061986,GO:0061987,GO:0062012,GO:0065007,GO:0070013,GO:0070784,GO:0070887,GO:0071103,GO:0071214,GO:0071236,GO:0071241,GO:0071248,GO:0071280,GO:0071310,GO:0071396,GO:0071470,GO:0071472,GO:0071473,GO:0071496,GO:0071824,GO:0071840,GO:0072364,GO:0080025,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090088,GO:0090089,GO:0090568,GO:0097305,GO:0097306,GO:0097307,GO:0097308,GO:0098609,GO:0104004,GO:0140110,GO:1900428,GO:1900429,GO:1901700,GO:1901701,GO:1901981,GO:1902679,GO:1902680,GO:1902936,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2000217,GO:2000531,GO:2000877,GO:2000879,GO:2001020,GO:2001141
Preferred nameTUP1
DescriptionWD repeat-containing protein
COG categoryB
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota
Evalue9.67e-60
Seed ortholog2880.D8LEC5
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-00_001730.1
TranscriptId158352
TrackFilteredModels1
ProteinId158030
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158030gene_1573Tribonema minus UTEX_B_3156 geneContig_4 336347..340436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158030Trimin1|158030|e_gw1.4.382.1Tribonema minus UTEX_B_3156 polypeptideContig_4 336347..340436 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1573_5exon_1573_5Tribonema minus UTEX_B_3156 exonContig_4 336347..336686 -
exon_1573_4exon_1573_4Tribonema minus UTEX_B_3156 exonContig_4 337446..337639 -
exon_1573_3exon_1573_3Tribonema minus UTEX_B_3156 exonContig_4 338424..338603 -
exon_1573_2exon_1573_2Tribonema minus UTEX_B_3156 exonContig_4 339072..339327 -
exon_1573_1exon_1573_1Tribonema minus UTEX_B_3156 exonContig_4 340294..340436 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1573CDS_1573Tribonema minus UTEX_B_3156 CDSContig_4 340294..340436 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1573 ID=mRNA_1573|Name=jgi.p|Trimin1|158030|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1113bp|location=Sequence derived from alignment at Contig_4:336347..340436- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGCGGCAAGGACGCGCGGCGGCCCGCCGTGGAGCTCGAGGGGTGCCTGTC
ACTCGGCAGCGTGGTGTGCTGCGTGCGCTTCTCGCCCGACGGCTCGCGCC
TCGCGACGGGCAGCCACGGCTGCGTGAAGGTCTTCGACGTCGCAACTGGC
TGCTCCCCCGCCCCCCCCTCCCCCCCCCCCCTTGTTCCTCTCCCCCCTCC
TAAGGACCCGTATGTGCGCTCGGTGTGCATGAGCCCCGATGGCGAGCGCG
TGGCGGCGGTCATGGAGAACAACTCGGCGCGCGTGCTGTCGCTCATGGAG
GATGGGCCAGCGCCGCTGGATCTCGTGGGCCACCAGAGCGAGGTGTACTC
GCTCGACTGGGTCGGCGCGCTCATTGCGACGGGCAGCGGCGACTGCCAGG
TGCGCGTGTGGGACTCCAACAGCGGCGCGTGCCGCATGGTCCTGGGCGAC
TCGCGCGGCCCCACGGACGGCGTGACGTGCGTCGCCTTCCGGCCCGACGG
CTCGCTGATCGCTGCCGCGAGCATCGACACGACGGTGCACGTGTGGGCTA
CCGCTGACGGCGGCTTGCTGTACCGACTGGATAGCCACACGGAGAGCGTG
TACTCAGTCGCGTTCAGCGCTGACGGCGCGCAGCTGGTGAGCGGCGGCCT
GGACAGGACGATACAGGTGTGGAGGCTCGGCCGCGGGGCGCCGCCCGCGC
AGCCGCCCGTGCCCGTCGCGCTCTCAGGCCACCAGGACTACGTGCTGAGC
GTGTGCTGCAGCGACGACGGCAGGTACATCATCAGCGGCAGCAAGGACAG
CACGGTGGTGATGTGGGACACGGCGGTGCAGCGGCGCGCGGTGGTCCTGG
CGGGGTTCCAGAACAGCATCATAGGCGTGGGCACGTGCCCCAACCAGCGG
CTGTTTGCGACGGGCGGCGGCGACAAGGTCGTGTGTCTGTGGCGCTACAC
GGAGGCGGAGGACAGGGAGGCGCAGCCGCAGCAGCAGCAGGTGCGTCAAG
TCGGAAGTTTGCGGAGTGGAAGCTGCTTGTTGAAGTTTGCTGTTGATAAA
TCATCTCGTACAGTCGAAGCCTTGTTGAATTTTGCTGGTGTCTTTGAGAC
TCACGGTGCCTGA
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protein sequence of jgi.p|Trimin1|158030

>Trimin1|158030|e_gw1.4.382.1 ID=Trimin1|158030|e_gw1.4.382.1|Name=jgi.p|Trimin1|158030|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=371bp
SGKDARRPAVELEGCLSLGSVVCCVRFSPDGSRLATGSHGCVKVFDVATG
CSPAPPSPPPLVPLPPPKDPYVRSVCMSPDGERVAAVMENNSARVLSLME
DGPAPLDLVGHQSEVYSLDWVGALIATGSGDCQVRVWDSNSGACRMVLGD
SRGPTDGVTCVAFRPDGSLIAAASIDTTVHVWATADGGLLYRLDSHTESV
YSVAFSADGAQLVSGGLDRTIQVWRLGRGAPPAQPPVPVALSGHQDYVLS
VCCSDDGRYIISGSKDSTVVMWDTAVQRRAVVLAGFQNSIIGVGTCPNQR
LFATGGGDKVVCLWRYTEAEDREAQPQQQQVRQVGSLRSGSCLLKFAVDK
SSRTVEALLNFAGVFETHGA*
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mRNA from alignment at Contig_4:336347..340436-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1573 ID=mRNA_1573|Name=jgi.p|Trimin1|158030|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4090bp|location=Sequence derived from alignment at Contig_4:336347..340436- (Tribonema minus UTEX_B_3156 )
AGCGGCAAGGACGCGCGGCGGCCCGCCGTGGAGCTCGAGGGGTGCCTGTC
ACTCGGCAGCGTGGTGTGCTGCGTGCGCTTCTCGCCCGACGGCTCGCGCC
TCGCGACGGGCAGCCACGGCTGCGTGAAGGTCTTCGACGTCGCGTCCGGC
GCGGAGCTCTTTGAGCACAGGAAGGACGTGCCGGCGGAGGACCAGGAGGC
GGTGAGTCGTGGATTGAAGTTATGTTTGAAGTTGCAGAACGCGGCGCCTT
GCTTTGAACTTTCAATGTCGCGTCCGGCGCGGAGCTCTTTGAGCACAGGA
AGGACGTGCCGGCGGAGGACCAGGAGGCGGTGAGTCGTGGATTGAAGTTA
TGTTTGAAGTTGCAGAACGCGGCGCCTTGCTTTGAACTTTCAATGTCGCG
TCCGGCGCAGAGCTCTTTGAGCACAGGAAGGACGTGCCGGCGGAGGACCA
GGAGGCGGTGAGTCGCCGTTTGAAGTTGCAGAACTTGTTGAAGGTAGAGC
AGTACTGTCTTAGTTATCCCTTGCCATCGCAAACCGCTACATGGTCATGT
CGCAATCACCAGTCAAGCCTGCAATCGGGGCGCGTGGCCGGGACGCGGCG
AGTCACCGCTTGCACTTGCTGCACTGGTGGCTCTTCATTTTGAGCGCGCA
GTCATTCAAAGCCGTGGTTGCGTCGTACAAACAGAGCAGCGGCGGACGCG
CCGCGGCGATGCAACGTTGCGCGCTGCGGGGCGTCAACTTCAACTTCAAT
AGACACATGCTCTTTGATGAGCTTGTGCAGCACACCGAGACAACCAGGAG
GCTGCGAGTCGACGCTGACTGTCACTGTTGGCTCTTCACAACGGTGGCAG
CGCGCTGCCGCAGATGGCGGCTGCACCGCCGCTAGCTGCTGTGCAGCATC
GTGCAACATGTATGGGGCCAATACTCGTATTGCATCGCCGCTGAGTGAGA
AGCAAGCGCTGTTTGCAATAGGCAATGTCTGGATCCAGCATGTGCATGCA
TCGGTTTTGCTTTGCGAATCGGCTGACTCTGACCGAGCGGGCCACAACTG
GCTGCCCCCCCTGCCCCCCCCCCCCCCCTTCCCGAATCGACCGGCCCTGA
CCGAGCCAGAACTGGCTGCTCCCCCGCCCCCCCCTCCCCCCCCCCCCTTG
TTCCTCTCCCCCCTCCTAAGGACCCGTATGTGCGCTCGGTGTGCATGAGC
CCCGATGGCGAGCGCGTGGCGGCGGTCATGGAGAACAACTCGGCGCGCGT
GCTGTCGCTCATGGAGGATGGGCCAGCGCCGCTGGATCTCGTGGGCCACC
AGAGCGAGGTGTACTCGCTCGACTGGGTCGGCGCGCTCATTGCGACGGGC
AGCGGCGACTGCCAGGTACGTCTGTGCTGCAAGAGGCAGTGCTCATGCAG
AAGTTACCGCGTGGCACATGTTTGTGAGTTGAAGTTGTAGTACACGGTCC
GGCGCCGCTGGACCTCGTGGGCCACCAGAGCGAGGTGTACTCGCTTGACT
GGGTCGGCGCACTCATCGTGACGGTCAGAGGCGACTGCTAGGTGTGCATG
AGAGGGGCTAGGCGTATGCATTGACCCGTTCATGCCTTGTGACCAGAGAC
CCGTCGGCTTGTGACCAAAGCGCGTGCGTTGCTGTCTCGCGCAGGTGCGC
GTGTGGGACTCCAACAGCGGCGCGTGCCGCATGGTTCCGGGCGACTTGCA
TGGCCCCACTGCGTGTACGCAACCCTAGCTTTGACCCTAAGCGTCAGCCC
CGTTGCTTTACGTAGGTCCGCGCGCGCGTGTGTCTCTGTCTTGCAAACCG
ACACAACACGCGCACGTTTTTTCACTCGCGCAGGTGCGCGTGTGGGACTC
CAACAGCGGCGCGTGCCGCATGGTCCTGGGCGACTCGCGCGGCCCCACGG
ACGGCGTGACGTGCGTCGCCTTCCGGCCCGACGGCTCGCTGATCGCTGCC
GCGAGCATCGACACGACGGTGCACGTGTGGGCTACCGCTGACGGCGGCTT
GCTGTACCGACTGGTGAGTGGAGGAGTGTTGCTGCTGCGTACCAGAAGTA
CCTAGCTGCTGTCATCGCCGCCGCCGCTGCGTCGGCGCAGCGCGCTTCGT
GTACAGCAGGGTCCTTGTGCGCGCACGCGCTGGCTGCCGCCGCGGCGCGC
ACGCTGCTCCGAACGTGGATTCAGCGGCTGATTGATTGTCGGTGCGGATG
GCTCGTGTCATTCTGGTGAGTGGAGGAGGCGGCGCGCGATGAGGTGCAGC
ATCAGTCTCTCGAGCGCGCGTGGAGCGTTGCTATTTCAGCAGCACGGACA
CGACGCGTCGTATGAGTTGCGGTACTCGCGAGCTAGGACGTGCGGCTGCG
GCAGCTGAGGCGCACACGGGCCACCGCAGTGCTTGACAAAGAGGGCAAAG
CTGACAATGGCCTTACTGCTGCACTCCAGCATTGCCTCGCTGACGCCGAT
GCCGCCGTGCGGGCGCAGCGCGCTTCGTGTGCAGGAGGGTCCATGTTTAC
GCACACACTGCATCGCGCTGCTGCCTCCGCCGCCGCTGCCGCAGCGCACG
CCACGGTCGCACACCGCACGTGGATCATGCAGCTGTTTGAGTGCGGCCGG
CGCGCGTTGCTGTCGCACGCTGTGTGGCGCAGACCGCAGCGCAGATCACC
GTTCCTCGGGGCAAAATGCGCCGCTGACTTGCCAGGCTCCGCCCCCAGAA
CGCCAGCTCACACCGCCTACGCACGACATGCCGCGCTGACGCGCCGACGT
TCGCTCCGCCGCCGCCGCTGCTGCCGCCGCCGCGGCGCGCACCGCAGGAT
AGCCACACGGAGAGCGTGTACTCAGTCGCGTTCAGCGCTGACGGCGCGCA
GCTGGTGAGCGGCGGCCTGGACAGGACGATACAGGTGTGGAGGCTCGGCC
GCGGGGCGCCGCCCGCGCAGCCGCCCGTGCCCGTCGCGCTCTCAGGCCAC
CAGGACTACGTGCTGAGCGTGTGCTGCAGCGACGACGGCAGGTGAGCGCC
GCTGCTGCCGCGCGGGGGAGCGCGTGTGTCATTTGAAGTTGAAGTTATTG
AATCGACGGCGCGGGCTGCATTTCAGTTGTGGTTGAAGTAGGCGAGAGAT
CGCTGATAACCGCGAGCCTGCCGATCAGTCCCAGTTGCCGTGACAATGAC
ATAGACGCCAGCTTGCTGCCCTGCGACAGCGCTGCTGTCAAGTTGAGGTT
GGCAGCGACGTGCCTGCAGTTGAACCTGAACTGGAATGGAGGGGCCTTGC
GTGGCTGCACGCCGATTAGCTGAGCATTTGCTGCAACAAGGACGGCAGGC
GAGCCGTGCCGCAAGTGCGCTGTGATGTTGAACAGTGCGCTGTGATGTTG
AAAGGCAGCTGTGCAGCCTGGTGCCAGCTGGCACACACCGATTCAAGCCT
GTGCCGACTCCGGCACCTCGTCCAAGTCCTGTTAGAGCGCGTTTGTTGTG
CGCACATGCCCTCGTTCTTCCAAATATTGTACATGTAGCTGGGATGCTCC
AGTGTTGAAGATGACTGCATTCGCACGCCTTGTTGACTCCAAAAAATAGA
GTTCTGACCTCCAAGGGTCGCGCTGCATTCGAGCGCTGCCGTCACGCCGT
CCGCAAGGTGCCCGCTCCCGCGCGCCGCCGACTTCGGCCGCAGCAACCGG
CGCAGGGCATGGCAGACGCCAATGAATCAGCGCTCTGAAAACTGCCTGCG
CCTCACAGCAGCGCTCATCTGCCGCGTGCGCGCCACCGCCGCCGCCGCAG
GTACATCATCAGCGGCAGCAAGGACAGCACGGTGGTGATGTGGGACACGG
CGGTGCAGCGGCGCGCGGTGGTCCTGGCGGGGTTCCAGAACAGCATCATA
GGCGTGGGCACGTGCCCCAACCAGCGGCTGTTTGCGACGGGCGGCGGCGA
CAAGGTCGTGTGTCTGTGGCGCTACACGGAGGCGGAGGACAGGGAGGCGC
AGCCGCAGCAGCAGCAGGTGCGTCAAGTCGGAAGTTTGCGGAGTGGAAGC
TGCTTGTTGAAGTTTGCTGTTGATAAATCATCTCGTACAGTCGAAGCCTT
GTTGAATTTTGCTGGTGTCTTTGAGACTCACGGTGCCTGA
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Coding sequence (CDS) from alignment at Contig_4:336347..340436-

>mRNA_1573 ID=mRNA_1573|Name=jgi.p|Trimin1|158030|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1113bp|location=Sequence derived from alignment at Contig_4:336347..340436- (Tribonema minus UTEX_B_3156 )
AGCGGCAAGGACGCGCGGCGGCCCGCCGTGGAGCTCGAGGGGTGCCTGTC
ACTCGGCAGCGTGGTGTGCTGCGTGCGCTTCTCGCCCGACGGCTCGCGCC
TCGCGACGGGCAGCCACGGCTGCGTGAAGGTCTTCGACGTCGCAACTGGC
TGCTCCCCCGCCCCCCCCTCCCCCCCCCCCCTTGTTCCTCTCCCCCCTCC
TAAGGACCCGTATGTGCGCTCGGTGTGCATGAGCCCCGATGGCGAGCGCG
TGGCGGCGGTCATGGAGAACAACTCGGCGCGCGTGCTGTCGCTCATGGAG
GATGGGCCAGCGCCGCTGGATCTCGTGGGCCACCAGAGCGAGGTGTACTC
GCTCGACTGGGTCGGCGCGCTCATTGCGACGGGCAGCGGCGACTGCCAGG
TGCGCGTGTGGGACTCCAACAGCGGCGCGTGCCGCATGGTCCTGGGCGAC
TCGCGCGGCCCCACGGACGGCGTGACGTGCGTCGCCTTCCGGCCCGACGG
CTCGCTGATCGCTGCCGCGAGCATCGACACGACGGTGCACGTGTGGGCTA
CCGCTGACGGCGGCTTGCTGTACCGACTGGATAGCCACACGGAGAGCGTG
TACTCAGTCGCGTTCAGCGCTGACGGCGCGCAGCTGGTGAGCGGCGGCCT
GGACAGGACGATACAGGTGTGGAGGCTCGGCCGCGGGGCGCCGCCCGCGC
AGCCGCCCGTGCCCGTCGCGCTCTCAGGCCACCAGGACTACGTGCTGAGC
GTGTGCTGCAGCGACGACGGCAGGTACATCATCAGCGGCAGCAAGGACAG
CACGGTGGTGATGTGGGACACGGCGGTGCAGCGGCGCGCGGTGGTCCTGG
CGGGGTTCCAGAACAGCATCATAGGCGTGGGCACGTGCCCCAACCAGCGG
CTGTTTGCGACGGGCGGCGGCGACAAGGTCGTGTGTCTGTGGCGCTACAC
GGAGGCGGAGGACAGGGAGGCGCAGCCGCAGCAGCAGCAGGTGCGTCAAG
TCGGAAGTTTGCGGAGTGGAAGCTGCTTGTTGAAGTTTGCTGTTGATAAA
TCATCTCGTACAGTCGAAGCCTTGTTGAATTTTGCTGGTGTCTTTGAGAC
TCACGGTGCCTGA
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