mRNA_15706 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353512
Unique NamemRNA_15706
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|353512 vs. uniprot
Match: A0A836CJ78_9STRA (PWWP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ78_9STRA)

HSP 1 Score: 276 bits (707), Expect = 3.030e-89
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 1
Query:  139 MAAEQDRPVVLVKLPELPWWPARLSTEACEKRKNGKQVHLFGKNESMWLPNDKICPYAAPSGAAVSLGKRVRGLEDAYSQADAFLAAASVACSPATSLDGNRGSTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRKGPGAFLAALPAARRGKERRVDWRAATLTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQAPPAAAEVAPRAAASKGXXXXXXXXXXXXXXXXXANEA 951
            MAAEQDRPVVLVKLPELPWWPARLSTEACEKRKNGKQVHLFGKNESMWLPNDKICPYAAPSGAAVSLGKRVRGLEDAYSQADAFLAAASVACSPATSLDGNRGSTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRKGPGAFLAALPAARRGKERRVDWRAATLTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQAPPAAAEVAPRAAASKGXXXXXXXXXXXXXXXXXANEA
Sbjct:    1 MAAEQDRPVVLVKLPELPWWPARLSTEACEKRKNGKQVHLFGKNESMWLPNDKICPYAAPSGAAVSLGKRVRGLEDAYSQADAFLAAASVACSPATSLDGNRGSTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRKGPGAFLAALPAARRGKERRVDWRAATLTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQAPPAAAEVAPRAAASKGXXXXXXXXXXXXXXXXXANEA 271          
BLAST of jgi.p|Trimin1|353512 vs. uniprot
Match: A0A835Z7P9_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7P9_9STRA)

HSP 1 Score: 752 bits (1942), Expect = 6.160e-272
Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 1
Query:    1 MVALACVCAESAMVALWRARLLLLVPGTAQAVLSAFDKQGAYTGMCILLQHGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVTDPPPTPSLSRPSSLQGSSIRLVPSPVQPAHDTSRAAPPDAAARHDDSGGIAVEEGLRQGM 1134
            MVALACVCAESAMVALWRARLLLLVPGTAQAVLSAFDKQGAYTGMCILLQHGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVTDPPPTPSLSRPSSLQGSSIRLVPSPVQPAHDTSRAAPPDAAARHDDSGGIAVEEGLRQGM
Sbjct:    1 MVALACVCAESAMVALWRARLLLLVPGTAQAVLSAFDKQGAYTGMCILLQHGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVTDPPPTPSLSRPSSLQGSSIRLVPSPVQPAHDTSRAAPPDAAARHDDSGGIAVEEGLRQGM 378          
BLAST of jgi.p|Trimin1|353512 vs. uniprot
Match: A0A6H5L263_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L263_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 3.390e-52
Identity = 121/299 (40.47%), Postives = 166/299 (55.52%), Query Frame = 1
Query:  229 AVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRAT--GGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVT-----DPPPTPSLSRPSSLQGSSIRLVPSP-VQPAHDTSRAAPPDAAARHDDSGG 1101
            A G+ D+P  ALISRS +     DP  CTF  KV NA  AG ++ +V+D  +E LF+M R++  G      +IP VL+S +SG  L AL    +D  GP V+VD +DP+  MF ++++TM  +V GFL +LL C S+ + T HR LRRY+++       RP+SL + L++PE  V  G  LE DSC +CLEAYR+GDK+  L C H  HA C+ PWL             +RQR+CP+CK  VT      PP + S S           ++ +P +QPAH        D   R DD  G
Sbjct:  149 AAGEEDLPSAALISRSEKD----DPSGCTFETKVLNAQGAGFSMVIVYDSREENLFKMGRSSSKGAKHPKVEIPLVLVSHASGLALKALIETASDTRGPEVYVDNTDPF-GMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTN--RPMSLPEVLQLPEVRVEEGSRLEGDSCPVCLEAYRIGDKLRSLPCQHAFHAGCITPWLT------------QRQRSCPMCKDPVTLTVGLAPPTSSSPSSXXXXXXXXAAVITAPAMQPAHA-------DGVERGDDGAG 421          
BLAST of jgi.p|Trimin1|353512 vs. uniprot
Match: A0A836C717_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C717_9STRA)

HSP 1 Score: 160 bits (406), Expect = 4.340e-41
Identity = 131/379 (34.56%), Postives = 162/379 (42.74%), Query Frame = 1
Query:   61 LLLLVPGTAQAVLSAFDKQGAYT-------GMCILLQHGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPV----VALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSC----------------------------------AICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVTDPPPTPSLSRPSSLQGSSIRLVPSPVQPAHDTSRAA 1062
            LL LV   A A L A+D+ G +T               GI GRLRVA PDIFGC PLD +       TDM         I   L  ++ KDP +C+FA KV                                                                V+VD +DPYE++F SLNMTM+ VV  FL +LL CASLFLC+S RLL R +A     R  RPLSLAQA R+PE  V  G  LEKD                                    +ICLE Y VG++++ L C HV+H  C+ PW++            ERQRTCPLCK +V  PPP   L  PSS   +S R+ P    P    +R+A
Sbjct:    8 LLCLVCHLATASLVAYDENGGFTVPPSTTSTTLTCCPQGITGRLRVAKPDIFGCAPLDLSAPGDEDYTDMESGLRPALPIVVLLSRSLPKDPAACSFATKV----------------------------------------------------------------VYVDNTDPYEQLFFSLNMTMVAVVTTFLLALLLCASLFLCSSERLLGRREAAL---RSTRPLSLAQAARLPEVVVAAGGDLEKDRSEKIMIALNGSAQRLKVCCGTVXXXXXXXXXXXXXSICLEDYTVGERLVRLTCAHVMHRACVLPWIS------------ERQRTCPLCKTEVVPPPP---LRTPSSA--ASQRIFPYTYVPPLQANRSA 302          
BLAST of jgi.p|Trimin1|353512 vs. uniprot
Match: A0A0K9RHC9_SPIOL (RING-type domain-containing protein n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RHC9_SPIOL)

HSP 1 Score: 85.5 bits (210), Expect = 3.490e-14
Identity = 93/302 (30.79%), Postives = 127/302 (42.05%), Query Frame = 1
Query:  151 HGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLC---TSHRLLR---RYDAIGGHGRPPRPLSLAQAL---RMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVT----DPPP---TPSLS-RPSSLQGS 1005
            HG+ G+L +A P I GC+ L   +++ VG    P+ ALI R          G C+F  K+  A  AG   A+++D  D        A  G     KIP+V +S ++G  +           GP V V     YE    S+      +   F++ L   A L  C     HR+ R   R      HG   R +    +L    + E++ T        +CAICLE YRVGDK+  L C H  H  C+  WL        T+ R      CP+CK D      +PP    TP LS  PSS   S
Sbjct:   35 HGMCGKLYIAEP-IDGCSQLRNRVEDVVGNCSSPI-ALIVR----------GGCSFEDKIRRAQNAGFEAAIIYDNEDVGSLV---AMAGNSAGIKIPAVFVSKATGNKIKTYGA------GPDVEVWILASYESSAWSI------MAISFISLLAMSAVLATCFFVRRHRIRRERPRARVREFHGMSSRLVKAMPSLVFTTVTEENCTAS------TCAICLEDYRVGDKIRILPCRHKFHTFCVDAWL--------TSWR----TFCPVCKRDARTSNGEPPASESTPLLSSNPSSAASS 291          
BLAST of jgi.p|Trimin1|353512 vs. uniprot
Match: A0A4Z2DTX1_SCHJA (E3 ubiquitin-protein ligase RNF13 isoform 2 n=3 Tax=Schistosoma japonicum TaxID=6182 RepID=A0A4Z2DTX1_SCHJA)

HSP 1 Score: 84.3 bits (207), Expect = 1.020e-13
Identity = 79/291 (27.15%), Postives = 127/291 (43.64%), Query Frame = 1
Query:  100 SAFDKQGAYTGMCILLQHGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLF---LCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVTDPP 963
            S F+   A  G  I     + GR+  + P I GC      L +    + +P ++LI R          G+C+F++K   A R G   A++F+  D+  F M   T   ++   I +V++  S G +L  L   C     P  FV+    + +   S+ + +I ++   L S++A +  +   L   HR  RRY            L + +  ++PE     G   E ++C ICLE Y+ GDK+  L C H  H+ C+ PWL              R+  CP+CK  V + P
Sbjct:   34 SEFEDSEALFGNVITQGSLLLGRIHASQP-INGCVDR-IPLPKNASASTLPYISLIKR----------GNCSFSRKTIAAERGGYIAAIIFNDEDDSTFPMGHNTSEVIN---ISAVMVGLSDGELL--LKKYCV----PHYFVEILSAHRR---SIMLYLIPLITCLLLSIIALSVAYCIRLWDRHRRRRRYC-----------LPVKELHKIPETLFKEGSS-EFETCVICLEDYKDGDKLRLLPCRHAYHSKCVDPWLL------------RRRGCCPICKKKVHNRP 276          
BLAST of jgi.p|Trimin1|353512 vs. uniprot
Match: A0A8B9ARK4_PHODC (receptor homology region, transmembrane domain- and RING domain-containing protein 1-like isoform X1 n=2 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B9ARK4_PHODC)

HSP 1 Score: 81.6 bits (200), Expect = 1.690e-13
Identity = 100/322 (31.06%), Postives = 129/322 (40.06%), Query Frame = 1
Query:  100 SAFDKQGAYTGMCILLQHGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLG--PRV-----FVDASDPYEKMFESLNMTMIGV-VCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGD-------VTDPPPTPSLSRPSSLQGSSIRLV 1020
            S F + GA     ++ + G +G +  A P +  C PL+      V        ALI R          G C F +KV NA  AG   A+++D  D PL     A GG  D   IP+V +S +SG  L   A      L   PR      F+ A       F SL  T+IG+ VC           LF+   H    R  A   HG   R +    +L     S          +CAICLE Y+VG+K+  L C H  HA C+  WL        TA R      CP+CK D       +     TP LS  SS   SS R +
Sbjct:    9 SLFSRLGAP----VVRRSGESGVMYPAEP-LDACTPLN----NKVVNDSRSSFALIIR----------GGCHFDEKVRNAQNAGFKAAIMYDNEDHPLVF---AIGGSPDGITIPAVFVSKASGEALRKYAGLTDMELWILPRTKNLEWFIMAIS-----FISLLATVIGLAVC-----------LFVHRQHGRHERSRASEIHGMSSRLVEAMPSLIFISASED---NCTSQTCAICLEDYKVGEKLRRLPCHHKFHAVCVDSWL--------TAWR----SFCPMCKQDCNSSTIYIPASESTPLLSSISSFPSSSARSL 277          
BLAST of jgi.p|Trimin1|353512 vs. uniprot
Match: A0A430Q2G7_SCHBO (E3 ubiquitin-protein ligase RNF13 n=3 Tax=Schistosoma TaxID=6181 RepID=A0A430Q2G7_SCHBO)

HSP 1 Score: 83.2 bits (204), Expect = 2.350e-13
Identity = 76/264 (28.79%), Postives = 118/264 (44.70%), Query Frame = 1
Query:  190 IFGCNPLDFTLDEAVGKTD-----MPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPL-SLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVTDPP 963
            I+   PL   +D+     D     +P ++LI R          G C+F  K   A R G    V+F+ VD+  F M   +   V    IP V++  S G++L  L   C     P  FV+    + +   S+ + +I ++   L S++A   L +    RLL RY     +  P + L  + + L + + S       E ++CAICLE Y+ GDK+  L CGH  H+ C+ PWL             +R+  CP+CK  V + P
Sbjct:   56 IYASKPLKGCVDQIPKPKDDHNSTLPYISLIKR----------GDCSFVDKALAAERGGYIATVIFNDVDDSTFPMGYNSSTNVS---IPVVMVGLSDGKLL--LDKYCV----PHYFVEILPAHRR---SIVLYLIPLITCLLISVVA---LSVAYGIRLLNRYRRRYRYCLPVKELRKIPETLFVKDSS-------EFETCAICLEDYKDGDKLRVLPCGHAYHSKCVDPWLL------------KRRGFCPICKKKVRNRP 275          
BLAST of jgi.p|Trimin1|353512 vs. uniprot
Match: A0A6J0ML59_RAPSA (receptor homology region, transmembrane domain- and RING domain-containing protein 4-like n=2 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0ML59_RAPSA)

HSP 1 Score: 82.4 bits (202), Expect = 3.840e-13
Identity = 106/367 (28.88%), Postives = 148/367 (40.33%), Query Frame = 1
Query:   64 LLLVPGTAQAV---------LSAFDKQGAYTGMCILLQHGIAGRLRVATPDIFGCNPLDFTLD-EAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALA--TACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEK--SVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVT----DPPPTPS----LSRPSSLQGSSIRLVPSPVQPAHDTSRAAPPDAAARHDDSG 1098
            LLL+P  A A          LS  D +  +T M  + +    G L VA P +  C+ L  T+     G    P   LI R          G C+F +K+ NA +AG   A+V++  D   F +  A G P     I    +S S+G +L   A  T     L P     A       F SL + M  V+          A+ F    HR+ RR   + G G   R + +    RMP    +  C       SC IC+E YR+G+K+  L C H  HA C+  WL             +R+  CP+CK D      + PP+PS    L  PS    SS  L  SP   +  +S   PP ++     +G
Sbjct:   11 LLLIPHLASAKIMLIGKNTSLSFDDIEADFTPM--IKKSDQCGVLYVAEP-LDACSDLVNTVSIPEEGSITSPSYVLIIR----------GGCSFEEKIRNAQKAGYKAAIVYNNEDYGFFLISMA-GNP-SGVVIYGTFVSKSTGEILKGYAGRTDMELWLAPSFETSAWSIMAISFISL-LAMSAVL----------ATCFFVRRHRIRRRRVRLMGGGEFAR-MGIDSIRRMPTTVFNGVCEEASTSISCVICIEDYRIGEKLRILPCNHKFHAKCVDLWLG------------QRRSFCPVCKRDARTININMPPSPSERTPLLSPSVTPTSSFLLSSSPSTSSVQSSYDIPPSSSTMQLQTG 338          
BLAST of jgi.p|Trimin1|353512 vs. uniprot
Match: A0A7C9AUE2_OPUST (RING-type domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AUE2_OPUST)

HSP 1 Score: 82.4 bits (202), Expect = 4.080e-13
Identity = 95/306 (31.05%), Postives = 130/306 (42.48%), Query Frame = 1
Query:  154 GIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDE-PLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLR-RYDAIGGHGRPPRPLSLAQALRMPEKSVTCGC--GLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAV---------SIAGIATAQRPERQRTCPLCKGDVTDPPPTPSLSRPSSLQGSSIRLV-PSP 1029
            GI G+L +A P +  C+PL   +++          ALI R          G C F  KV  A +AG   A+V+D VD  PL  M  ++ G     KI +V +S +SG  L + A      LG  V++  S  YE    S+      +   F++ L   A L  C   R  R R +   G  R    +S      MP    T          +CAICLE YRVGDK+  L C H  HA C+  WL             A  +T + P  + T PL   + +    TP  S  SS+  S+I +  PSP
Sbjct:   54 GICGKLYIAEP-LDACSPLMNKIEQNNSGNCTSPFALIIR----------GVCGFEDKVRRAQKAGFETAIVYDNVDNSPLVAMAGSSAG----IKIHAVFVSKASGERLKSNAG-----LGAEVWIIPS--YENSAWSI------MAISFISLLAMSAVLATCFFVRRNRIRRERPQGRVREFHGMSSCLVKAMPSLIFTAVTDDNCTSSTCAICLEDYRVGDKLRILPCSHKFHAFCVDSWLTTWRTFCPVCKRDARTSTGEPPASEST-PLLSSNPSSAASTPFSSFRSSVHSSAIPIASPSP 330          
BLAST of jgi.p|Trimin1|353512 vs. uniprot
Match: D7LXA5_ARALL (Peptidase/ protein binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=D7LXA5_ARALL)

HSP 1 Score: 80.5 bits (197), Expect = 1.700e-12
Identity = 97/346 (28.03%), Postives = 150/346 (43.35%), Query Frame = 1
Query:   55 ARLLLLVPGTAQAVLSAFDKQGAYTGMCILLQHGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLC---TSHRLLRRYD-AIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVT----DPPP---TPSLSRPSSLQGSSIRLVPS----PVQPAHD 1047
            A++LL+   T+   LS  D +  +T M      G  G L VA P +  C+ L  T++   G +  P   LI R          G C+F +K+ NA +AG   A+V+DY D   +    +  G      I    +S ++G VL    T  A      V++  S      FE+   +++ +   F++ L   A L  C     HR+ RR   A+ G+  P    ++ + +        C       SCAIC+E YR+GDK+  L C H  H  C+  WL             +R+  CP+CK D      D P    TP L+  +S+  +S  L+ S    P+Q +H+
Sbjct:   20 AKILLIGKNTS---LSFDDIEANFTPMIKRSDQG--GVLYVAEP-LDACSDLVNTVNVKNGSSVPPPYVLIIR----------GGCSFEEKIRNAQKAGYKAAIVYDYED---YGFLVSMAGNPSGVLIYGTFVSKATGEVL----TQYAGRTDFEVWLMPS------FETSAWSIMAI--SFISLLAMSAVLATCFFVRRHRVRRRRILALNGNDFPRMAKNMLKRMPTTIFKGVCDEASTSISCAICIEDYRIGDKLRILPCHHKFHVGCVDLWLG------------QRRSFCPVCKRDARSISIDMPASEHTPLLTPSNSMTPTSSFLLSSSSTTPLQSSHE 322          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353512 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CJ78_9STRA3.030e-89100.00PWWP domain-containing protein n=1 Tax=Tribonema m... [more]
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BLAST of jgi.p|Trimin1|353512 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7P9_9STRA6.160e-272100.00RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A6H5L263_9PHAE3.390e-5240.47RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A836C717_9STRA4.340e-4134.56RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A0K9RHC9_SPIOL3.490e-1430.79RING-type domain-containing protein n=2 Tax=Spinac... [more]
A0A4Z2DTX1_SCHJA1.020e-1327.15E3 ubiquitin-protein ligase RNF13 isoform 2 n=3 Ta... [more]
A0A8B9ARK4_PHODC1.690e-1331.06receptor homology region, transmembrane domain- an... [more]
A0A430Q2G7_SCHBO2.350e-1328.79E3 ubiquitin-protein ligase RNF13 n=3 Tax=Schistos... [more]
A0A6J0ML59_RAPSA3.840e-1328.88receptor homology region, transmembrane domain- an... [more]
A0A7C9AUE2_OPUST4.080e-1331.05RING-type domain-containing protein n=1 Tax=Opunti... [more]
D7LXA5_ARALL1.700e-1228.03Peptidase/ protein binding protein n=1 Tax=Arabido... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_168contigContig_168:8457..10787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353512|estExt_Genemark1.C_Ctg_1680004
Hectar predicted targeting categoryother localisation
TranscriptId353834
TrackFilteredModels1
ProteinId353512
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353512gene_15706Tribonema minus UTEX_B_3156 geneContig_168 8457..10787 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15706_1exon_15706_1Tribonema minus UTEX_B_3156 exonContig_168 8457..8731 +
exon_15706_2exon_15706_2Tribonema minus UTEX_B_3156 exonContig_168 10109..10787 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_15706UTR5_15706Tribonema minus UTEX_B_3156 five_prime_UTRContig_168 8457..8594 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15706CDS_15706Tribonema minus UTEX_B_3156 CDSContig_168 8595..8731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353512Trimin1|353512|estExt_Genemark1.C_Ctg_1680004Tribonema minus UTEX_B_3156 polypeptideContig_168 8595..10787 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15706 ID=mRNA_15706|Name=jgi.p|Trimin1|353512|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=954bp|location=Sequence derived from alignment at Contig_168:8457..10787+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGGCCTCATTGTGGCTGGCGACAGCAGGAGCAGTGTGTATACAGCAGCA
GGTGGCGGACAGCATATCTGTTTGCAGCTTGGACTGGGCTGCACAAGAGC
TGCTTGTTGAGGTGTCCGGCAGCAATCTGTGTTTAGCTATGGCCGCAGAG
CAAGACCGGCCCGTCGTTCTCGTGAAGCTGCCAGAGCTACCGTGGTGGCC
AGCGCGCCTCAGCACTGAAGCCTGCGAGAAGAGGAAGAATGGCAAGCAAG
TCCATCTTTTTGGGAAAAACGAGAGCATGTGGCTCCCGAACGACAAGATC
TGCCCCTACGCCGCCCCGAGCGGCGCCGCGGTGAGCCTCGGCAAACGCGT
GCGCGGGCTTGAAGATGCCTACTCCCAAGCAGACGCGTTCCTCGCAGCGG
CGTCCGTGGCCTGCTCGCCCGCCACATCCCTTGACGGCAACAGGGGCTCA
ACTTCAAGTGCAAGTTCAAGTTCAAGCCCGTCGCCTCCACCGCCCTCCTC
CTCGTCGCCGCCGCCGCACAAAGCCATGAGGCCCGCTGAAAGCGGCGACA
GCGGCGCCGGCGGCAGCAACGGCGGCAGCGACGGCAGCAGCGGCAGCGAC
GGCGGCGGCGGCAGCAGCGGCGGCGGCGGCGGCGGCGGCGCGGCGGCGCC
GCGCAAGGGCCCCGGCGCGTTCCTCGCGGCGCTGCCGGCGGCGCGGCGCG
GCAAGGAGCGCCGCGTGGACTGGCGCGCGGCGACGCTGACGCGCCGCACG
CAGCCGCCGCCGCCGCTCGTGCCGCTGTATTCGACGGCGCCGCCGCCGCA
CCAGGCGATCGCCAACGACGACACGTACTACCCGCAGGCGCCGCCGGCGG
CGGCGGAGGTGGCCCCGCGCGCTGCCGCGTCCAAGGGGAAGGGCAAGGGC
AAGGCGCGCGCGGCGCGCGGCAGCGGCGGCGGCGGCGGCGCGAACGAGGC
TTGA
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protein sequence of jgi.p|Trimin1|353512

>Trimin1|353512|estExt_Genemark1.C_Ctg_1680004 ID=Trimin1|353512|estExt_Genemark1.C_Ctg_1680004|Name=jgi.p|Trimin1|353512|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=272bp
MAAEQDRPVVLVKLPELPWWPARLSTEACEKRKNGKQVHLFGKNESMWLP
NDKICPYAAPSGAAVSLGKRVRGLEDAYSQADAFLAAASVACSPATSLDG
NRGSTSSASSSSSPSPPPPSSSSPPPHKAMRPAESGDSGAGGSNGGSDGS
SGSDGGGGSSGGGGGGGAAAPRKGPGAFLAALPAARRGKERRVDWRAATL
TRRTQPPPPLVPLYSTAPPPHQAIANDDTYYPQAPPAAAEVAPRAAASKG
KGKGKARAARGSGGGGGANEA*
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mRNA from alignment at Contig_168:8457..10787+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15706 ID=mRNA_15706|Name=jgi.p|Trimin1|353512|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2331bp|location=Sequence derived from alignment at Contig_168:8457..10787+ (Tribonema minus UTEX_B_3156 )
GCGGCCTCATTGTGGCTGGCGACAGCAGGAGCAGTGTGTATACAGCAGCA GGTGGCGGACAGCATATCTGTTTGCAGCTTGGACTGGGCTGCACAAGAGC TGCTTGTTGAGGTGTCCGGCAGCAATCTGTGTTTAGCTATGGCCGCAGAG CAAGACCGGCCCGTCGTTCTCGTGAAGCTGCCAGAGCTACCGTGGTGGCC AGCGCGCCTCAGCACTGAAGCCTGCGAGAAGAGGAAGAATGGCAAGCAAG TCCATCTTTTTGGGAAAAACGAGAGGTGAGGTGGACCCTGTGCCTGAAAT GGTTACCGCATGCGTCTTAGTGCAATGTATGCTGTTATGTAGTGCATCAA GCCCCATGCGAACGTGCCTCACAGCGATTGAGGACACGGTTATCGTTGAA TCATGCCAGCTCAATCGACGATCCAGCAAAAAATTGGTTTCACTCCCGTC GCTTCCGACCAAACAGCAGAAAAAGAAGGCAATCGCCATATACATATGTG TTCATGGTGAAGTGTGCTTGTGTCAGCTGGTGATGGACAGATTCCCCAGG GTGAGGAACAGACTTGCAGCTTTGATGCAGATGCCGAGTCCTTGAAAAGA GTTTAGTGCAGCTGAATGTCAGTGACGACGGAACGATGTGCAGTACGTGT ATATTGGCACTTACACACACAGCTGCTTTGATCAATATGGTGGTTTGAGA ATTATTCACAACGGCTTCTTTGCGTCTGAGGACAGCCATTCCACCTGAGC TGGGAATCAGCACTGTGGGCCTGAGCCAAGGTGTACGTACGCCTTCGTCA AGAGCATCATACCCTACGTTCTTATGGACAGCCCTGTTGCAAGCATGGCT GATACCCAGCTGTTGTGCACATCGTCTCTTGCGGAGCAGTTTTGTTGTTG TGGGGATGTTCCCTTCAGCGCCACAAGCACAGCTTTCGTGACCAACCGCA GTGGGGGCTTTTGAACAGGGAACTCAGTTTCAGTTTCACGCCTGTGCCCA GCTCTGTGAAATCAGCGCATGGCCGTACAGGGTGCGTAGTGCGGCTGTGC GGTGGCAGTGCTGAGCAAATTGTGCGTCGCGTCGCACGCCGTGGAACGCG TGCTTACCGCCGCTGCTGCCGCGCACTGCCAACCGTAACCCTAACCCTGC TCCCATGTGCTGTTTGAGCGGCACAGCCCTCTAGGGCAAGGGTCAGGTCT AGGGTAAGGGTCAGGGCTAGGGTGGGGCTGGCCGGCACCTCCAGCCACGC CCGTCTTGCTCCCCCCCCCCCCACACACACACACACTCAACGGCAAGCTC ACATCACTGGTGCCCGTCTGCTGTGCCGGGCGCACTAGCAGCGTAACGCG ATGAGCAAGCCGCCGTGCAGGCGCCGGTGCCGCACTCTCTGATGTCACAC GCTCTCCGCACTGTGCGCTCTGTGCCTGAGCGAGCGCGGCAGCTAGGTAG TGTTGTAATGCATGAACGCCTTCATCAGGCACAGTACCCCCCCCCCTTCC CCCCCCCCCCCTCCCTTCGGGCGTTCACCAGCACACTCACACTCAGCACG CGCGCAACGCTGTGCGCAGGGCATGCCACGGCAGTCACACAACCAAACGT CTCAGCGCGCTGACAGTGTCCTCCCCCCCCCCCCCCCTTCACGCGCGCGC AGCATGTGGCTCCCGAACGACAAGATCTGCCCCTACGCCGCCCCGAGCGG CGCCGCGGTGAGCCTCGGCAAACGCGTGCGCGGGCTTGAAGATGCCTACT CCCAAGCAGACGCGTTCCTCGCAGCGGCGTCCGTGGCCTGCTCGCCCGCC ACATCCCTTGACGGCAACAGGGGCTCAACTTCAAGTGCAAGTTCAAGTTC AAGCCCGTCGCCTCCACCGCCCTCCTCCTCGTCGCCGCCGCCGCACAAAG CCATGAGGCCCGCTGAAAGCGGCGACAGCGGCGCCGGCGGCAGCAACGGC GGCAGCGACGGCAGCAGCGGCAGCGACGGCGGCGGCGGCAGCAGCGGCGG CGGCGGCGGCGGCGGCGCGGCGGCGCCGCGCAAGGGCCCCGGCGCGTTCC TCGCGGCGCTGCCGGCGGCGCGGCGCGGCAAGGAGCGCCGCGTGGACTGG CGCGCGGCGACGCTGACGCGCCGCACGCAGCCGCCGCCGCCGCTCGTGCC GCTGTATTCGACGGCGCCGCCGCCGCACCAGGCGATCGCCAACGACGACA CGTACTACCCGCAGGCGCCGCCGGCGGCGGCGGAGGTGGCCCCGCGCGCT GCCGCGTCCAAGGGGAAGGGCAAGGGCAAGGCGCGCGCGGCGCGCGGCAG CGGCGGCGGCGGCGGCGCGAACGAGGCTTGA
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Coding sequence (CDS) from alignment at Contig_168:8457..10787+

>mRNA_15706 ID=mRNA_15706|Name=jgi.p|Trimin1|353512|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=816bp|location=Sequence derived from alignment at Contig_168:8457..10787+ (Tribonema minus UTEX_B_3156 )
ATGGCCGCAGAGCAAGACCGGCCCGTCGTTCTCGTGAAGCTGCCAGAGCT
ACCGTGGTGGCCAGCGCGCCTCAGCACTGAAGCCTGCGAGAAGAGGAAGA
ATGGCAAGCAAGTCCATCTTTTTGGGAAAAACGAGAGCATGTGGCTCCCG
AACGACAAGATCTGCCCCTACGCCGCCCCGAGCGGCGCCGCGGTGAGCCT
CGGCAAACGCGTGCGCGGGCTTGAAGATGCCTACTCCCAAGCAGACGCGT
TCCTCGCAGCGGCGTCCGTGGCCTGCTCGCCCGCCACATCCCTTGACGGC
AACAGGGGCTCAACTTCAAGTGCAAGTTCAAGTTCAAGCCCGTCGCCTCC
ACCGCCCTCCTCCTCGTCGCCGCCGCCGCACAAAGCCATGAGGCCCGCTG
AAAGCGGCGACAGCGGCGCCGGCGGCAGCAACGGCGGCAGCGACGGCAGC
AGCGGCAGCGACGGCGGCGGCGGCAGCAGCGGCGGCGGCGGCGGCGGCGG
CGCGGCGGCGCCGCGCAAGGGCCCCGGCGCGTTCCTCGCGGCGCTGCCGG
CGGCGCGGCGCGGCAAGGAGCGCCGCGTGGACTGGCGCGCGGCGACGCTG
ACGCGCCGCACGCAGCCGCCGCCGCCGCTCGTGCCGCTGTATTCGACGGC
GCCGCCGCCGCACCAGGCGATCGCCAACGACGACACGTACTACCCGCAGG
CGCCGCCGGCGGCGGCGGAGGTGGCCCCGCGCGCTGCCGCGTCCAAGGGG
AAGGGCAAGGGCAAGGCGCGCGCGGCGCGCGGCAGCGGCGGCGGCGGCGG
CGCGAACGAGGCTTGA
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