Trimin1|353512|estExt_Genemark1.C_Ctg_1680004 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353512
Unique NameTrimin1|353512|estExt_Genemark1.C_Ctg_1680004
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length272
Homology
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BLAST of jgi.p|Trimin1|353512 vs. uniprot
Match: A0A836CJ78_9STRA (PWWP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ78_9STRA)

HSP 1 Score: 276 bits (705), Expect = 1.170e-89
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0 
Query:    1 MAAEQDRPVVLVKLPELPWWPARLSTEACEKRKNGKQVHLFGKNESMWLPNDKICPYAAPSGAAVSLGKRVRGLEDAYSQADAFLAAASVACSPATSLDGNRGSTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRKGPGAFLAALPAARRGKERRVDWRAATLTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQAPPAAAEVAPRAAASKGXXXXXXXXXXXXXXXXXANEA 271
            MAAEQDRPVVLVKLPELPWWPARLSTEACEKRKNGKQVHLFGKNESMWLPNDKICPYAAPSGAAVSLGKRVRGLEDAYSQADAFLAAASVACSPATSLDGNRGSTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRKGPGAFLAALPAARRGKERRVDWRAATLTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQAPPAAAEVAPRAAASKGXXXXXXXXXXXXXXXXXANEA
Sbjct:    1 MAAEQDRPVVLVKLPELPWWPARLSTEACEKRKNGKQVHLFGKNESMWLPNDKICPYAAPSGAAVSLGKRVRGLEDAYSQADAFLAAASVACSPATSLDGNRGSTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRKGPGAFLAALPAARRGKERRVDWRAATLTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQAPPAAAEVAPRAAASKGXXXXXXXXXXXXXXXXXANEA 271
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353512 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CJ78_9STRA1.170e-89100.00PWWP domain-containing protein n=1 Tax=Tribonema m... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000313PWWP domainPFAMPF00855PWWPcoord: 9..82
e-value: 2.4E-6
score: 28.0
IPR000313PWWP domainPROSITEPS50812PWWPcoord: 6..60
score: 10.555229
NoneNo IPR availableGENE3D2.30.30.140coord: 3..97
e-value: 1.8E-8
score: 36.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..126
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..271
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..157
NoneNo IPR availableSUPERFAMILY63748Tudor/PWWP/MBTcoord: 9..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_168contigContig_168:8595..10787 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353512mRNA_15706Tribonema minus UTEX_B_3156 mRNAContig_168 8457..10787 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353512|estExt_Genemark1.C_Ctg_1680004 ID=Trimin1|353512|estExt_Genemark1.C_Ctg_1680004|Name=jgi.p|Trimin1|353512|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=272bp
MAAEQDRPVVLVKLPELPWWPARLSTEACEKRKNGKQVHLFGKNESMWLP
NDKICPYAAPSGAAVSLGKRVRGLEDAYSQADAFLAAASVACSPATSLDG
NRGSTSSASSSSSPSPPPPSSSSPPPHKAMRPAESGDSGAGGSNGGSDGS
SGSDGGGGSSGGGGGGGAAAPRKGPGAFLAALPAARRGKERRVDWRAATL
TRRTQPPPPLVPLYSTAPPPHQAIANDDTYYPQAPPAAAEVAPRAAASKG
KGKGKARAARGSGGGGGANEA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000313PWWP_dom