mRNA_15696 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|145759
Unique NamemRNA_15696
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|145759 vs. uniprot
Match: A0A836CIU3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIU3_9STRA)

HSP 1 Score: 121 bits (304), Expect = 3.500e-35
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:    1 HHSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYIGQLVLQPATLTLTLN 177
            HHSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYIGQLVLQPATLTLTLN
Sbjct:    1 HHSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYIGQLVLQPATLTLTLN 59
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BLAST of jgi.p|Trimin1|145759 vs. uniprot
Match: A0A835YQA9_9STRA (DNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA9_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.230e-14
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 HHSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYI 132
            HHSII DL RGSDED + LAMYCLKDAHLPLLL EKLSVMVNYI
Sbjct:  422 HHSIISDLQRGSDEDRRRLAMYCLKDAHLPLLLMEKLSVMVNYI 465
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BLAST of jgi.p|Trimin1|145759 vs. uniprot
Match: A0A2R5G2Q3_9STRA (DNA polymerase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G2Q3_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.940e-10
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 HHSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYI 132
            HHSII DL RGSDED + LA+YCLKDA+LPL L EKL V++NY+
Sbjct:  508 HHSIISDLQRGSDEDRRRLAVYCLKDAYLPLQLLEKLMVLINYL 551
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BLAST of jgi.p|Trimin1|145759 vs. uniprot
Match: A0A6H5KUL9_9PHAE (DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUL9_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 4.940e-10
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 HHSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYI 132
            HHSII DL  GSDED + LA+YC+KDA LP+ L EKLSVMVNYI
Sbjct:  359 HHSIISDLQNGSDEDRRRLAVYCIKDALLPMKLMEKLSVMVNYI 402
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BLAST of jgi.p|Trimin1|145759 vs. uniprot
Match: A0A7S1TZD4_9STRA (DNA-directed DNA polymerase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZD4_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.920e-9
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 HHSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVN 126
            HHSII DL RGSDED + LA+YCLKDA LPL L EKLS+++N
Sbjct:  116 HHSIIADLQRGSDEDRRRLAVYCLKDAWLPLKLMEKLSMLIN 157
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BLAST of jgi.p|Trimin1|145759 vs. uniprot
Match: D7G6D3_ECTSI (DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6D3_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.240e-9
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 HHSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYI 132
            H+SII DL  GSDED + LA+YC+KDA LP+ L EKLSVMVNYI
Sbjct:  496 HYSIISDLQNGSDEDRRRLAVYCIKDALLPMKLMEKLSVMVNYI 539
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BLAST of jgi.p|Trimin1|145759 vs. uniprot
Match: A0A812URB4_SYMMI (DNA polymerase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812URB4_SYMMI)

HSP 1 Score: 58.9 bits (141), Expect = 1.120e-8
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 HHSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYI 132
            HHSII DL  GSD D   LA+YCLKDAHLP  L  KLS++VNYI
Sbjct:   60 HHSIISDLQMGSDADRHRLAVYCLKDAHLPQQLMVKLSILVNYI 103
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BLAST of jgi.p|Trimin1|145759 vs. uniprot
Match: A0A3M6VP77_9STRA (DNA polymerase n=6 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VP77_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.900e-8
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 HSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYI 132
            H II DL RGSD+D   LA+YCLKDA+LPL L +KLS +VNYI
Sbjct:  474 HGIISDLQRGSDDDRHRLAVYCLKDAYLPLRLLDKLSYLVNYI 516
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BLAST of jgi.p|Trimin1|145759 vs. uniprot
Match: A0A2D4C550_PYTIN (DNA polymerase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C550_PYTIN)

HSP 1 Score: 57.8 bits (138), Expect = 2.900e-8
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 HSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYI 132
            H II DL RG+D+D   LA+YCLKDA+LPL L EKLS +VNYI
Sbjct:  434 HGIISDLQRGTDDDRHRLAVYCLKDAYLPLRLLEKLSFLVNYI 476
[Close]
BLAST of jgi.p|Trimin1|145759 vs. uniprot
Match: A0A8K1C2T3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2T3_PYTOL)

HSP 1 Score: 56.2 bits (134), Expect = 1.010e-7
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 HSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYI 132
            H II DL RG+D+D   LA+YCLKDA+LPL L +KLS +VNYI
Sbjct:  480 HGIISDLQRGTDDDRHRLAVYCLKDAYLPLRLLDKLSFVVNYI 522
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|145759 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIU3_9STRA3.500e-35100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YQA9_9STRA4.230e-1486.36DNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A2R5G2Q3_9STRA1.940e-1070.45DNA polymerase n=1 Tax=Hondaea fermentalgiana TaxI... [more]
A0A6H5KUL9_9PHAE4.940e-1072.73DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
A0A7S1TZD4_9STRA2.920e-971.43DNA-directed DNA polymerase (Fragment) n=1 Tax=Pha... [more]
D7G6D3_ECTSI3.240e-970.45DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A812URB4_SYMMI1.120e-868.18DNA polymerase n=1 Tax=Symbiodinium microadriaticu... [more]
A0A3M6VP77_9STRA2.900e-867.44DNA polymerase n=6 Tax=Peronosporaceae TaxID=4777 ... [more]
A0A2D4C550_PYTIN2.900e-867.44DNA polymerase n=1 Tax=Pythium insidiosum TaxID=11... [more]
A0A8K1C2T3_PYTOL1.010e-765.12Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_177contigContig_177:243403..243579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|145759|gw1.177.18.1
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
KEGG rclassRC02795
KEGG ReactionR00375,R00376,R00377,R00378
KEGG ModuleM00262
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03430,ko03440,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map03430,map03440,map05166
KEGG koko:K02327
EC2.7.7.7
GOsGO:0000228,GO:0003674,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006287,GO:0006289,GO:0006297,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008296,GO:0008408,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0018130,GO:0019438,GO:0030894,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0043625,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045004,GO:0045005,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
DescriptionDNA replication proofreading
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0417@1|root,KOG0969@2759|Eukaryota
Evalue5.32e-10
Seed ortholog2880.D7G6D3
Hectar predicted targeting categoryother localisation
TranscriptId146081
TrackFilteredModels1
ProteinId145759
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|145759gene_15696Tribonema minus UTEX_B_3156 geneContig_177 243403..243579 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15696_1exon_15696_1Tribonema minus UTEX_B_3156 exonContig_177 243403..243579 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15696CDS_15696Tribonema minus UTEX_B_3156 CDSContig_177 243403..243579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|145759Trimin1|145759|gw1.177.18.1Tribonema minus UTEX_B_3156 polypeptideContig_177 243403..243579 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15696 ID=mRNA_15696|Name=jgi.p|Trimin1|145759|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=177bp|location=Sequence derived from alignment at Contig_177:243403..243579+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CACCACAGCATCATCTGGGACCTGCTGCGCGGCAGCGATGAGGACTGGCA
GTGCCTGGCCATGTACTGCCTCAAAGACGCGCACCTGCCGCTGCTGCTCA
CAGAGAAGCTGTCCGTCATGGTCAACTACATTGGTCAATTGGTGCTTCAA
CCTGCAACCCTAACTTTAACCCTAAAC
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protein sequence of jgi.p|Trimin1|145759

>Trimin1|145759|gw1.177.18.1 ID=Trimin1|145759|gw1.177.18.1|Name=jgi.p|Trimin1|145759|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=59bp
HHSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYIGQLVLQ
PATLTLTLN
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mRNA from alignment at Contig_177:243403..243579+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15696 ID=mRNA_15696|Name=jgi.p|Trimin1|145759|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=177bp|location=Sequence derived from alignment at Contig_177:243403..243579+ (Tribonema minus UTEX_B_3156 )
CACCACAGCATCATCTGGGACCTGCTGCGCGGCAGCGATGAGGACTGGCA
GTGCCTGGCCATGTACTGCCTCAAAGACGCGCACCTGCCGCTGCTGCTCA
CAGAGAAGCTGTCCGTCATGGTCAACTACATTGGTCAATTGGTGCTTCAA
CCTGCAACCCTAACTTTAACCCTAAAC
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Coding sequence (CDS) from alignment at Contig_177:243403..243579+

>mRNA_15696 ID=mRNA_15696|Name=jgi.p|Trimin1|145759|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=177bp|location=Sequence derived from alignment at Contig_177:243403..243579+ (Tribonema minus UTEX_B_3156 )
CACCACAGCATCATCTGGGACCTGCTGCGCGGCAGCGATGAGGACTGGCA
GTGCCTGGCCATGTACTGCCTCAAAGACGCGCACCTGCCGCTGCTGCTCA
CAGAGAAGCTGTCCGTCATGGTCAACTACATTGGTCAATTGGTGCTTCAA
CCTGCAACCCTAACTTTAACCCTAAAC
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