Trimin1|145759|gw1.177.18.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|145759
Unique NameTrimin1|145759|gw1.177.18.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length59
Homology
BLAST of jgi.p|Trimin1|145759 vs. uniprot
Match: A0A836CIU3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIU3_9STRA)

HSP 1 Score: 121 bits (304), Expect = 3.500e-35
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0
Query:    1 HHSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYIGQLVLQPATLTLTLN 59
            HHSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYIGQLVLQPATLTLTLN
Sbjct:    1 HHSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYIGQLVLQPATLTLTLN 59          
BLAST of jgi.p|Trimin1|145759 vs. uniprot
Match: A0A835YQA9_9STRA (DNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA9_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.230e-14
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 0
Query:    1 HHSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYI 44
            HHSII DL RGSDED + LAMYCLKDAHLPLLL EKLSVMVNYI
Sbjct:  422 HHSIISDLQRGSDEDRRRLAMYCLKDAHLPLLLMEKLSVMVNYI 465          
BLAST of jgi.p|Trimin1|145759 vs. uniprot
Match: A0A2R5G2Q3_9STRA (DNA polymerase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G2Q3_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.940e-10
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 0
Query:    1 HHSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYI 44
            HHSII DL RGSDED + LA+YCLKDA+LPL L EKL V++NY+
Sbjct:  508 HHSIISDLQRGSDEDRRRLAVYCLKDAYLPLQLLEKLMVLINYL 551          
BLAST of jgi.p|Trimin1|145759 vs. uniprot
Match: A0A6H5KUL9_9PHAE (DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUL9_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 4.940e-10
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 0
Query:    1 HHSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYI 44
            HHSII DL  GSDED + LA+YC+KDA LP+ L EKLSVMVNYI
Sbjct:  359 HHSIISDLQNGSDEDRRRLAVYCIKDALLPMKLMEKLSVMVNYI 402          
BLAST of jgi.p|Trimin1|145759 vs. uniprot
Match: A0A7S1TZD4_9STRA (DNA-directed DNA polymerase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZD4_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.920e-9
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 0
Query:    1 HHSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVN 42
            HHSII DL RGSDED + LA+YCLKDA LPL L EKLS+++N
Sbjct:  116 HHSIIADLQRGSDEDRRRLAVYCLKDAWLPLKLMEKLSMLIN 157          
BLAST of jgi.p|Trimin1|145759 vs. uniprot
Match: D7G6D3_ECTSI (DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6D3_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.240e-9
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 0
Query:    1 HHSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYI 44
            H+SII DL  GSDED + LA+YC+KDA LP+ L EKLSVMVNYI
Sbjct:  496 HYSIISDLQNGSDEDRRRLAVYCIKDALLPMKLMEKLSVMVNYI 539          
BLAST of jgi.p|Trimin1|145759 vs. uniprot
Match: A0A812URB4_SYMMI (DNA polymerase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812URB4_SYMMI)

HSP 1 Score: 58.9 bits (141), Expect = 1.120e-8
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0
Query:    1 HHSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYI 44
            HHSII DL  GSD D   LA+YCLKDAHLP  L  KLS++VNYI
Sbjct:   60 HHSIISDLQMGSDADRHRLAVYCLKDAHLPQQLMVKLSILVNYI 103          
BLAST of jgi.p|Trimin1|145759 vs. uniprot
Match: A0A3M6VP77_9STRA (DNA polymerase n=6 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VP77_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.900e-8
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 0
Query:    2 HSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYI 44
            H II DL RGSD+D   LA+YCLKDA+LPL L +KLS +VNYI
Sbjct:  474 HGIISDLQRGSDDDRHRLAVYCLKDAYLPLRLLDKLSYLVNYI 516          
BLAST of jgi.p|Trimin1|145759 vs. uniprot
Match: A0A2D4C550_PYTIN (DNA polymerase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C550_PYTIN)

HSP 1 Score: 57.8 bits (138), Expect = 2.900e-8
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 0
Query:    2 HSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYI 44
            H II DL RG+D+D   LA+YCLKDA+LPL L EKLS +VNYI
Sbjct:  434 HGIISDLQRGTDDDRHRLAVYCLKDAYLPLRLLEKLSFLVNYI 476          
BLAST of jgi.p|Trimin1|145759 vs. uniprot
Match: A0A8K1C2T3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2T3_PYTOL)

HSP 1 Score: 56.2 bits (134), Expect = 1.010e-7
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 0
Query:    2 HSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYI 44
            H II DL RG+D+D   LA+YCLKDA+LPL L +KLS +VNYI
Sbjct:  480 HGIISDLQRGTDDDRHRLAVYCLKDAYLPLRLLDKLSFVVNYI 522          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|145759 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIU3_9STRA3.500e-35100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YQA9_9STRA4.230e-1486.36DNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A2R5G2Q3_9STRA1.940e-1070.45DNA polymerase n=1 Tax=Hondaea fermentalgiana TaxI... [more]
A0A6H5KUL9_9PHAE4.940e-1072.73DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
A0A7S1TZD4_9STRA2.920e-971.43DNA-directed DNA polymerase (Fragment) n=1 Tax=Pha... [more]
D7G6D3_ECTSI3.240e-970.45DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A812URB4_SYMMI1.120e-868.18DNA polymerase n=1 Tax=Symbiodinium microadriaticu... [more]
A0A3M6VP77_9STRA2.900e-867.44DNA polymerase n=6 Tax=Peronosporaceae TaxID=4777 ... [more]
A0A2D4C550_PYTIN2.900e-867.44DNA polymerase n=1 Tax=Pythium insidiosum TaxID=11... [more]
A0A8K1C2T3_PYTOL1.010e-765.12Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..54
e-value: 1.3E-5
score: 26.7
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_177contigContig_177:243403..243579 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|145759mRNA_15696Tribonema minus UTEX_B_3156 mRNAContig_177 243403..243579 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|145759|gw1.177.18.1 ID=Trimin1|145759|gw1.177.18.1|Name=jgi.p|Trimin1|145759|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=59bp
HHSIIWDLLRGSDEDWQCLAMYCLKDAHLPLLLTEKLSVMVNYIGQLVLQ
PATLTLTLN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf