mRNA_15623 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|134589
Unique NamemRNA_15623
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|134589 vs. uniprot
Match: A0A836CLC8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLC8_9STRA)

HSP 1 Score: 170 bits (430), Expect = 8.910e-54
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 QESQNLKCVEEDKRIYIKAAILHIMYTPRKALWHQQLCSANCVYFPPELKVIKRMIEVLFERSYMCTSIGPLTPSTYRHL 240
            QESQNLKCVEEDKRIYIKAAILHIMYTPRKALWHQQLCSANCVYFPPELKVIKRMIEVLFERSYMCTSIGPLTPSTYRHL
Sbjct:    1 QESQNLKCVEEDKRIYIKAAILHIMYTPRKALWHQQLCSANCVYFPPELKVIKRMIEVLFERSYMCTSIGPLTPSTYRHL 80
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BLAST of jgi.p|Trimin1|134589 vs. uniprot
Match: A0A7F5RC03_AGRPL (cullin-2 n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A7F5RC03_AGRPL)

HSP 1 Score: 50.4 bits (119), Expect = 2.590e-5
Identity = 26/64 (40.62%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:   16 LKCVEEDKRIYIKAAILHIMYTPRKALWHQQL----CSANCVYFPPELKVIKRMIEVLFERSYM 195
            +  VEED+++Y++AAI+ IM + RK L H QL    C+ + V F P + +IK+ IE L ++ Y+
Sbjct:  670 MNSVEEDRKLYLQAAIVRIMKS-RKVLKHNQLIQEVCAQSKVSFAPSIPMIKKCIEALIDKQYI 732
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BLAST of jgi.p|Trimin1|134589 vs. uniprot
Match: UPI001CF4743F (cullin-2-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF4743F)

HSP 1 Score: 49.7 bits (117), Expect = 4.850e-5
Identity = 29/78 (37.18%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:   10 QNLKCVEEDKRIYIKAAILHIMYTPRKALWH----QQLCSANCVYFPPELKVIKRMIEVLFERSYMCTSIGPLTPSTY 231
            Q L  V+ED+++Y++AAI+ IM + RKAL H    Q++ S +   F P + +IK+ IE L ++ Y+    G     TY
Sbjct:  665 QTLSSVDEDRKMYLQAAIVRIMKS-RKALKHNSLMQEVISQSSARFTPSVAMIKKCIESLIDKQYLERREGTKDEYTY 741
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BLAST of jgi.p|Trimin1|134589 vs. uniprot
Match: A0A6P8IC96_ACTTE (cullin-2-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IC96_ACTTE)

HSP 1 Score: 49.3 bits (116), Expect = 6.630e-5
Identity = 29/78 (37.18%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:   10 QNLKCVEEDKRIYIKAAILHIMYTPRKALWH----QQLCSANCVYFPPELKVIKRMIEVLFERSYMCTSIGPLTPSTY 231
            Q L  V+ED+++Y++AAI+ IM + RK L H    Q++ S +   F P + +IK+ IE L E+ Y+    G     TY
Sbjct:  662 QTLVSVDEDRKMYLQAAIVRIMKS-RKVLKHNSLIQEVISQSRARFTPNIPMIKKCIEALIEKQYLERKEGTKEEYTY 738
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BLAST of jgi.p|Trimin1|134589 vs. uniprot
Match: C3Y4H3_BRAFL (CULLIN_2 domain-containing protein n=4 Tax=Branchiostoma TaxID=7737 RepID=C3Y4H3_BRAFL)

HSP 1 Score: 49.3 bits (116), Expect = 6.630e-5
Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:   19 KCVEEDKRIYIKAAILHIMYTPRKALWH----QQLCSANCVYFPPELKVIKRMIEVLFERSYMCTSIGPLTPSTY 231
            K V+ED+++Y++AAI+ IM   RKAL H    Q++ S +   F P + +IKR IE L  + Y+  S       TY
Sbjct:  668 KAVDEDRKLYLQAAIVRIMKA-RKALKHNTLIQEVISQSRARFNPSISMIKRCIEQLINKEYIARSNDAADEYTY 741
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|134589 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CLC8_9STRA8.910e-54100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7F5RC03_AGRPL2.590e-540.63cullin-2 n=1 Tax=Agrilus planipennis TaxID=224129 ... [more]
UPI001CF4743F4.850e-537.18cullin-2-like n=1 Tax=Acropora millepora TaxID=452... [more]
A0A6P8IC96_ACTTE6.630e-537.18cullin-2-like n=1 Tax=Actinia tenebrosa TaxID=6105... [more]
C3Y4H3_BRAFL6.630e-538.67CULLIN_2 domain-containing protein n=4 Tax=Branchi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_140contigContig_140:20556..20810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|134589|gw1.140.16.1
DescriptionCullin family protein. Source PGD
COG categoryD
Max annot lvl121069|Pythiales
EggNOG OGsCOG5647@1|root,KOG2166@2759|Eukaryota,1MAJB@121069|Pythiales
Evalue1.93e-10
Seed ortholog115417.EPrPW00000018566
Hectar predicted targeting categoryother localisation
TranscriptId134911
TrackFilteredModels1
ProteinId134589
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134589gene_15623Tribonema minus UTEX_B_3156 geneContig_140 20556..20810 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15623_1exon_15623_1Tribonema minus UTEX_B_3156 exonContig_140 20556..20666 +
exon_15623_2exon_15623_2Tribonema minus UTEX_B_3156 exonContig_140 20682..20810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15623CDS_15623Tribonema minus UTEX_B_3156 CDSContig_140 20556..20666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134589Trimin1|134589|gw1.140.16.1Tribonema minus UTEX_B_3156 polypeptideContig_140 20556..20810 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15623 ID=mRNA_15623|Name=jgi.p|Trimin1|134589|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=240bp|location=Sequence derived from alignment at Contig_140:20556..20810+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGAGAGTCAGAACTTAAAGTGCGTGGAGGAGGACAAGCGCATCTACAT
AAAGGCCGCCATCTTGCACATCATGTATACGCCGCGCAAGGCACTCTGGC
ACCAGCAGCTATGCTCAGCCAACTGTGTGTATTTTCCCCCCGAACTCAAG
GTCATCAAGCGCATGATTGAGGTGCTGTTTGAGAGGTCATATATGTGTAC
CTCAATAGGGCCCCTCACACCCAGCACTTACCGCCACCTG
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protein sequence of jgi.p|Trimin1|134589

>Trimin1|134589|gw1.140.16.1 ID=Trimin1|134589|gw1.140.16.1|Name=jgi.p|Trimin1|134589|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=80bp
QESQNLKCVEEDKRIYIKAAILHIMYTPRKALWHQQLCSANCVYFPPELK
VIKRMIEVLFERSYMCTSIGPLTPSTYRHL
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mRNA from alignment at Contig_140:20556..20810+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15623 ID=mRNA_15623|Name=jgi.p|Trimin1|134589|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=255bp|location=Sequence derived from alignment at Contig_140:20556..20810+ (Tribonema minus UTEX_B_3156 )
CAGGAGAGTCAGAACTTAAAGTGCGTGGAGGAGGACAAGCGCATCTACAT
AAAGGCCGCCATCTTGCACATCATGTATACGCCGCGCAAGGCACTCTGGC
ACCAGCAGCTAGTGTAGTGGCGGAAGTGCTCAGCCAACTGTGTGTATTTT
CCCCCCGAACTCAAGGTCATCAAGCGCATGATTGAGGTGCTGTTTGAGAG
GTCATATATGTGTACCTCAATAGGGCCCCTCACACCCAGCACTTACCGCC
ACCTG
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Coding sequence (CDS) from alignment at Contig_140:20556..20810+

>mRNA_15623 ID=mRNA_15623|Name=jgi.p|Trimin1|134589|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=240bp|location=Sequence derived from alignment at Contig_140:20556..20810+ (Tribonema minus UTEX_B_3156 )
CAGGAGAGTCAGAACTTAAAGTGCGTGGAGGAGGACAAGCGCATCTACAT
AAAGGCCGCCATCTTGCACATCATGTATACGCCGCGCAAGGCACTCTGGC
ACCAGCAGCTATGCTCAGCCAACTGTGTGTATTTTCCCCCCGAACTCAAG
GTCATCAAGCGCATGATTGAGGTGCTGTTTGAGAGGTCATATATGTGTAC
CTCAATAGGGCCCCTCACACCCAGCACTTACCGCCACCTG
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