mRNA_15564 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|352093
Unique Name	mRNA_15564
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|352093 vs. uniprot
Match: A0A836CNT9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNT9_9STRA)

HSP 1 Score: 395 bits (1015), Expect = 3.270e-139
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 2

Query:    8 MSAMAIKFTLGHSFLACGQCSRNPSAPSPKALARFHRGDIYDLPPQQQLIYDALYTADAEDVQKDRAVRKLVRQILASVGTQTSQGAGIDAGNDGEQHTYPARVQTALSTLSFLEDLGLSQDQIRSIRNRAPTLLQCGVEGPTGLRAKCEYFQTALAMSRQQLLGLVNKAPATMNLSLLKNIKPKVDYMCEVYSGC 595
            MSAMAIKFTLGHSFLACGQCSRNPSAPSPKALARFHRGDIYDLPPQQQLIYDALYTADAEDVQKDRAVRKLVRQILASVGTQTSQGAGIDAGNDGEQHTYPARVQTALSTLSFLEDLGLSQDQIRSIRNRAPTLLQCGVEGPTGLRAKCEYFQTALAMSRQQLLGLVNKAPATMNLSLLKNIKPKVDYMCEVYSGC
Sbjct:    1 MSAMAIKFTLGHSFLACGQCSRNPSAPSPKALARFHRGDIYDLPPQQQLIYDALYTADAEDVQKDRAVRKLVRQILASVGTQTSQGAGIDAGNDGEQHTYPARVQTALSTLSFLEDLGLSQDQIRSIRNRAPTLLQCGVEGPTGLRAKCEYFQTALAMSRQQLLGLVNKAPATMNLSLLKNIKPKVDYMCEVYSGC 196

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352093 vs. uniprot

BLAST of jgi.p|Trimin1|352093 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CNT9_9STRA	3.270e-139	100.00	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_108	contig	Contig_108:358015..361341 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|352093\|estExt_Genemark1.C_Ctg_1080028
Description	mTERF
COG category	S
Max annot lvl	2836\|Bacillariophyta
EggNOG OGs	KOG1267@1\|root,KOG1267@2759\|Eukaryota,2XF0Z@2836\|Bacillariophyta
Evalue	0.000216
Seed ortholog	159749.K0SAJ8
Hectar predicted targeting category	other localisation
TranscriptId	352415
Track	FilteredModels1
ProteinId	352093

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352093	gene_15564	Tribonema minus UTEX_B_3156	gene	Contig_108 358015..361341 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352093	Trimin1\|352093\|estExt_Genemark1.C_Ctg_1080028	Tribonema minus UTEX_B_3156	polypeptide	Contig_108 358022..361340 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_15564_1	exon_15564_1	Tribonema minus UTEX_B_3156	exon	Contig_108 358015..358111 +
exon_15564_2	exon_15564_2	Tribonema minus UTEX_B_3156	exon	Contig_108 358514..358797 +
exon_15564_3	exon_15564_3	Tribonema minus UTEX_B_3156	exon	Contig_108 359457..359561 +
exon_15564_4	exon_15564_4	Tribonema minus UTEX_B_3156	exon	Contig_108 360646..360721 +
exon_15564_5	exon_15564_5	Tribonema minus UTEX_B_3156	exon	Contig_108 361308..361341 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_15564	UTR5_15564	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_108 358015..358021 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_15564	CDS_15564	Tribonema minus UTEX_B_3156	CDS	Contig_108 358022..358111 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_15564	UTR3_15564	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_108 361341..361341 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_108:358015..361341+
coding sequence from alignment at Contig_108:358015..361341+

spliced messenger RNA

>mRNA_15564 ID=mRNA_15564|Name=jgi.p|Trimin1|352093|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=596bp|location=Sequence derived from alignment at Contig_108:358015..361341+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGAGGACATGTCTGCGATGGCAATCAAGTTCACCCTTGGACACAGCTTCT
TGGCGTGCGGGCAGTGCTCACGGAACCCAAGTGCCCCCTCCCCAAAGGCG
CTAGCCCGCTTTCACCGCGGCGACATATATGACCTGCCCCCGCAGCAGCA
GCTCATCTACGACGCATTATACACTGCCGACGCCGAGGATGTCCAGAAGG
ACCGCGCAGTGCGCAAGCTTGTGCGACAAATCCTCGCCTCAGTCGGCACA
CAAACGTCGCAGGGGGCAGGTATAGATGCGGGTAATGATGGCGAGCAGCA
TACCTACCCAGCGCGTGTGCAGACGGCGCTTTCGACGCTGTCGTTTCTGG
AGGACCTGGGGCTCTCGCAGGATCAGATCAGGAGCATACGTAACAGGGCG
CCCACGCTGCTGCAGTGCGGTGTGGAAGGGCCCACAGGGCTGCGTGCGAA
ATGTGAATACTTCCAGACTGCGCTGGCCATGAGCAGGCAGCAGCTGTTGG
GCCTGGTCAACAAGGCGCCCGCCACCATGAACCTGTCGCTGCTGAAGAAC
ATTAAACCAAAGGTTGACTACATGTGTGAAGTGTACAGCGGGTGCT

protein sequence of jgi.p|Trimin1|352093

>Trimin1|352093|estExt_Genemark1.C_Ctg_1080028 ID=Trimin1|352093|estExt_Genemark1.C_Ctg_1080028|Name=jgi.p|Trimin1|352093|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=196bp
MSAMAIKFTLGHSFLACGQCSRNPSAPSPKALARFHRGDIYDLPPQQQLI
YDALYTADAEDVQKDRAVRKLVRQILASVGTQTSQGAGIDAGNDGEQHTY
PARVQTALSTLSFLEDLGLSQDQIRSIRNRAPTLLQCGVEGPTGLRAKCE
YFQTALAMSRQQLLGLVNKAPATMNLSLLKNIKPKVDYMCEVYSGC

mRNA from alignment at Contig_108:358015..361341+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_15564 ID=mRNA_15564|Name=jgi.p|Trimin1|352093|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3327bp|location=Sequence derived from alignment at Contig_108:358015..361341+ (Tribonema minus UTEX_B_3156 )
CGAGGACATGTCTGCGATGGCAATCAAGTTCACCCTTGGACACAGCTTCT
TGGCGTGCGGGCAGTGCTCACGGAACCCAAGTGCCCCCTCCCCAAAGGTA
TTGCATATTGCAACTTGTACCATAGCGTGCAAGAAATGGGGCTTGCGATG
CATATCACCTCCCTCCTATTGAACATTGACCATACTCACAGGCTGTAAGC
CACTCTCGCCCTGTTTCTAGGCATTTTAGCAAGTGCTTGGCCATCTTGTG
TGAGCTTGACAACAATGAGATGAACAATGCCCGCCATCACTCGCTCCCTC
GCGAGCAACGTTGTTGCAGAGTGCGCAGTGGCACGTCAACCTACGTGTGT
GATTGTCAAAAATCTCCAAGTTGCGCACTACTTGCATGATGATGATGATG
TGTTCACAGTAGCATTCGGACCGACATCAGCGATCATTCTACCCTCTCAC
AGCATCCAGACTGCTCTCTGCACCCCGTACGTTGTTGCCGAACGCGCAGG
CGCTAGCCCGCTTTCACCGCGGCGACATATATGACCTGCCCCCGCAGCAG
CAGCTCATCTACGACGCATTATACACTGCCGACGCCGAGGATGTCCAGAA
GGACCGCGCAGTGCGCAAGCTTGTGCGACAAATCCTCGCCTCAGTCGGCA
CACAAACGTCGCAGGGGGCAGGTATAGATGCGGGTAATGATGGCGAGCAG
CATACCTACCCAGCGCGTGTGCAGACGGCGCTTTCGACGCTGTCGTTTCT
GGAGGACCTGGGGCTCTCGCAGGATCAGATCAGGTGCGTAAAGAGCATTC
TGCGCATACTTGTCAAAAGCTACATTGAGGCGCTTTGATATACTTGTGCC
CTGAGGCTCTGTGAATCGAGCAAACCCACCTTGAGGGCAGCGCAGTCCTT
GCCCTTTGCAGAAGCAGCAGCAGCAGCAGCAGAGTGTGTAGTTCCTACAC
AGTCGTTGTTGTGGTGACCTGATCATGCTACCAGCAAGCTCACACACAAG
CGGCATGCACTTTGCGTTCTGTCAACCTGTCAGCGCGCTTGCTGCCTGCG
GCAGTAGTTGGCGATCTTGCATGCTCAGCTGTTGCCAATAGATATCGCAC
CTCGCACTGTTGCCCCCTGCGCTTGCAAAATGATTCTAGTTGATACACAG
AAGGGCTTGAATGCACCTTGCTATGATCACGTGCTTCTGGCATCCAATTG
CAATATTGGGGGGGGGGGGGGGGCTTGCACTGATTTCAGCGACCTTGAAT
CAGTGTCCACAACTGGTGCACGGACACCATCGATCAACGCACATGGCTAC
ATCATGTCACATCAAGGCTCATTGGAGTTGATCAGAAAGCAAAGCCTAAC
ATCAGGTGTACCTCATCATACATTCGTGCCCCAAGCGCAGATTCTGACCT
CAAATGCCACTGCATCGCTACACGCTCTCTGCATCTGCGCAGGAGCATAC
GTAACAGGGCGCCCACGCTGCTGCAGTGCGGTGTGGAAGGGCCCACAGGG
CTGCGTGCGAAATGTGAATACTTCCAGACTGCGCTGGCCATGAGCAGGTG
CGTACTTCAAGTTCTGCAGTGACTCTCCCTATCTCCCTCAAAGGCAGTGG
CGGCCCATCATTGCAGCTGCACTCTTGCCAGTAGCAGCAATGGCACTCGT
GATGCATTGAGTCGTGATAAGGTGGAAACGCGTCAACCCAGCACAATCAC
AGAAGGGGATCAGGGCGGCCAAACATGATCATGCTGCTGTGTACAGATGT
ACGGCAATTGTGCCATTTTACTGCCGGGCTGAGTCACAGCAACCGAACTG
GAATTTGCTGAAAGTGTTGCAGGCATTGGTTGCGAAGCAGGGATGCAGTG
AAAATTTGCAGACGCAGTTGCATGGCAGTCGTTATTTGCCGCGCTCCTTT
GTCAGCGCACGCAGTGGCCTGGAATGCAGCATTTTGATGTTAAAATGGCA
GCGCTGACTGCCAGCGAATGATATCCTGATAGTCACAGGCGCCACTACGT
ACAAGCATGACAGACATGAACACACAAGTGCTGTTCTCGTAACGCTGGAC
GCCCATGAGCAGCAACAGATGTGCTTTGTCCTTTAAGGACACCGTCGGTA
ACGTGAAGGAAGTCAAAGGCCGCAACGTAACTGTAGGGGTACATGTGCTG
TTGATATGCTGCTATGCCGCTGCGACGTGCACGCCAGGTTCACTATGAAA
ACTAAGTAGAAAGCACAGAAGCGACAGTCAGTCACGCGCTACCTGCAAGC
AGCAAACTCAAGGGAGGCGTGGGAGACAAGAGGGACCTAGCTGCAGTGCA
ATGCCCCCAGTTGTTGAAGTTTGTGGTCTGCTGCCACGTCATGGAGGCCG
CCAATTGGTGTGTCTCAGGCTGCCATTAGGTATCGGGGCCATAGCTCACC
ATTCTAAAACTTTAGTGCGCGTTTTGAGTCAATGCGAGCAGGGTAACTGG
AAAGCGTGGGGATTTCCCTGCCCGCAAGACTTTGTCATGTACCCTACGTT
CTTTGGAGAAGTTTTGGAGAAAGCTGGCTATTCATGCAGGACACAAGTAT
GCACCTTGCGGTACTTGGTTTCACACTCGACTCTCTTCACAATTACTCAA
CGGCCGTTCACCTGTACTCTCTTTTATGCAGGCAGCAGCTGTTGGGCCTG
GTCAACAAGGCGCCCGCCACCATGAACCTGTCGCTGCTGAAGAACATTAA
ACCAAAGGTAGGAACGTGCATCATTTTGACGACTGATTCAATAAAGTGTA
ATGACATCATCAGGTGATCATTCTCTGCAATCGGGCAGACTTGAAACAAC
GACAGTAACCGCTGCGTGAGGACAGGTGAGCCTCATTGCTCACCATACGC
CTCACTGTCAGCACATGCTGCAATACAACGCTCAGCTTAATAAAAACTAT
CTGCATTGATGCGCATGTATGCCTCGCTAGGGTTTTCTGGCACCATCATC
ACCCCACCAATCAAGCCTTCAGCTAGTGGATGAAGTTACCTCCATGTAGC
TAAGGGCAAGAGATGAATCCGCTGACAATAGGGGTGGGTGCGGGCAGACT
TGCGTGCATGGTGTAATGTTAGTTGTGCTGAAAAGTCATGAGATGCTGCA
ATCATTGACGTGTAGTTTGTGACGCCCGGCCGTTCTGCATTTCACGCAGC
ACGCGCACGAGCACGTTTGCACCTGACACCAGTGCTGGCACTTGACACTT
TGTGCTACATGCTTCAGATGTGACCCTGATCATCAACAGCAGGGTCTGGT
ACTGGCACTAACTGACGACTGTACCCTTCCTCACCTCCTGCAGGTTGACT
ACATGTGTGAAGTGTACAGCGGGTGCT

Coding sequence (CDS) from alignment at Contig_108:358015..361341+

>mRNA_15564 ID=mRNA_15564|Name=jgi.p|Trimin1|352093|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=588bp|location=Sequence derived from alignment at Contig_108:358015..361341+ (Tribonema minus UTEX_B_3156 )
ATGTCTGCGATGGCAATCAAGTTCACCCTTGGACACAGCTTCTTGGCGTG
CGGGCAGTGCTCACGGAACCCAAGTGCCCCCTCCCCAAAGGCGCTAGCCC
GCTTTCACCGCGGCGACATATATGACCTGCCCCCGCAGCAGCAGCTCATC
TACGACGCATTATACACTGCCGACGCCGAGGATGTCCAGAAGGACCGCGC
AGTGCGCAAGCTTGTGCGACAAATCCTCGCCTCAGTCGGCACACAAACGT
CGCAGGGGGCAGGTATAGATGCGGGTAATGATGGCGAGCAGCATACCTAC
CCAGCGCGTGTGCAGACGGCGCTTTCGACGCTGTCGTTTCTGGAGGACCT
GGGGCTCTCGCAGGATCAGATCAGGAGCATACGTAACAGGGCGCCCACGC
TGCTGCAGTGCGGTGTGGAAGGGCCCACAGGGCTGCGTGCGAAATGTGAA
TACTTCCAGACTGCGCTGGCCATGAGCAGGCAGCAGCTGTTGGGCCTGGT
CAACAAGGCGCCCGCCACCATGAACCTGTCGCTGCTGAAGAACATTAAAC
CAAAGGTTGACTACATGTGTGAAGTGTACAGCGGGTGC