Trimin1|352093|estExt_Genemark1.C_Ctg_1080028 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352093
Unique NameTrimin1|352093|estExt_Genemark1.C_Ctg_1080028
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length196
Homology
[Close]
BLAST of jgi.p|Trimin1|352093 vs. uniprot
Match: A0A836CNT9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNT9_9STRA)

HSP 1 Score: 395 bits (1014), Expect = 4.280e-139
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0 
Query:    1 MSAMAIKFTLGHSFLACGQCSRNPSAPSPKALARFHRGDIYDLPPQQQLIYDALYTADAEDVQKDRAVRKLVRQILASVGTQTSQGAGIDAGNDGEQHTYPARVQTALSTLSFLEDLGLSQDQIRSIRNRAPTLLQCGVEGPTGLRAKCEYFQTALAMSRQQLLGLVNKAPATMNLSLLKNIKPKVDYMCEVYSGC 196
            MSAMAIKFTLGHSFLACGQCSRNPSAPSPKALARFHRGDIYDLPPQQQLIYDALYTADAEDVQKDRAVRKLVRQILASVGTQTSQGAGIDAGNDGEQHTYPARVQTALSTLSFLEDLGLSQDQIRSIRNRAPTLLQCGVEGPTGLRAKCEYFQTALAMSRQQLLGLVNKAPATMNLSLLKNIKPKVDYMCEVYSGC
Sbjct:    1 MSAMAIKFTLGHSFLACGQCSRNPSAPSPKALARFHRGDIYDLPPQQQLIYDALYTADAEDVQKDRAVRKLVRQILASVGTQTSQGAGIDAGNDGEQHTYPARVQTALSTLSFLEDLGLSQDQIRSIRNRAPTLLQCGVEGPTGLRAKCEYFQTALAMSRQQLLGLVNKAPATMNLSLLKNIKPKVDYMCEVYSGC 196
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352093 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CNT9_9STRA4.280e-139100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10Transcription termination factor 3, mitochondrialcoord: 101..194
e-value: 2.0E-11
score: 45.5
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 106..191
e-value: 5.9E-7
score: 28.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_108contigContig_108:358022..361340 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352093mRNA_15564Tribonema minus UTEX_B_3156 mRNAContig_108 358015..361341 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352093|estExt_Genemark1.C_Ctg_1080028 ID=Trimin1|352093|estExt_Genemark1.C_Ctg_1080028|Name=jgi.p|Trimin1|352093|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=196bp
MSAMAIKFTLGHSFLACGQCSRNPSAPSPKALARFHRGDIYDLPPQQQLI
YDALYTADAEDVQKDRAVRKLVRQILASVGTQTSQGAGIDAGNDGEQHTY
PARVQTALSTLSFLEDLGLSQDQIRSIRNRAPTLLQCGVEGPTGLRAKCE
YFQTALAMSRQQLLGLVNKAPATMNLSLLKNIKPKVDYMCEVYSGC
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038538MTERF_sf
IPR003690MTERF