mRNA_15456 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353798
Unique NamemRNA_15456
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|353798 vs. uniprot
Match: A0A835Z5X9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5X9_9STRA)

HSP 1 Score: 172 bits (435), Expect = 3.300e-51
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 
Query:    1 MQVSSLTRRLLDLGFSRHMQALGSVGGSCLLLLAIFAGLLAWTYVLPSMAEPGRAAHGILTRRALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAQPAGACGSAHWSGLAGGARRYLCP 384
            MQVSSLTRRLLDLGFSRHMQALGSVGGSCLLLLAIFAGLLAWTYVLPSMAEPGRAAHGILTRRALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAQPAGACGSAHWSGLAGGARRYLCP
Sbjct:    1 MQVSSLTRRLLDLGFSRHMQALGSVGGSCLLLLAIFAGLLAWTYVLPSMAEPGRAAHGILTRRALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAQPAGACGSAHWSGLAGGARRYLCP 128
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353798 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z5X9_9STRA3.300e-51100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_185contigContig_185:83..2020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353798|estExt_Genemark1.C_Ctg_1850001
Hectar predicted targeting categorysignal peptide
TranscriptId354120
TrackFilteredModels1
ProteinId353798
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353798gene_15456Tribonema minus UTEX_B_3156 geneContig_185 83..2020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353798Trimin1|353798|estExt_Genemark1.C_Ctg_1850001Tribonema minus UTEX_B_3156 polypeptideContig_185 83..1675 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15456_1exon_15456_1Tribonema minus UTEX_B_3156 exonContig_185 83..102 +
exon_15456_2exon_15456_2Tribonema minus UTEX_B_3156 exonContig_185 182..221 +
exon_15456_3exon_15456_3Tribonema minus UTEX_B_3156 exonContig_185 1284..1405 +
exon_15456_4exon_15456_4Tribonema minus UTEX_B_3156 exonContig_185 1471..2020 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15456CDS_15456Tribonema minus UTEX_B_3156 CDSContig_185 83..102 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15456UTR3_15456Tribonema minus UTEX_B_3156 three_prime_UTRContig_185 1676..2020 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15456 ID=mRNA_15456|Name=jgi.p|Trimin1|353798|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=732bp|location=Sequence derived from alignment at Contig_185:83..2020+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGTGAGCTCTCTCACGCGGCGCCTGCTTGACCTCGGCTTCTCGCG
CCACATGCAGGCACTGGGCAGTGTCGGCGGCTCGTGCCTGCTCCTCCTGG
CCATCTTTGCGGGCCTCCTCGCGTGGACGTACGTGCTGCCGAGCATGGCG
GAGCCCGGCCGCGCCGCGCACGGCATCCTCACGCGCCGCGCGCTGCCGCC
GCCCGCGCCTGTGGCAGCAGCGCCCAGCACGCTGCTGCTGCCGCTGCTGC
TGCTGTGTCAGCGTTCGGGCACTGGCGGCAGCGCTGCCGCCGCGCCGCCG
CAGCGGCGCGCGCAGCCGGCCGGTGCATGCGGCAGCGCTCATTGGAGCGG
GCTGGCCGGCGGTGCGCGGCGGTACCTGTGCCCTTGAGCGCATTGGATCT
GGTTGGCGCCTGTAGCTGTTCGATGTCAGTGTCCATGTCGTGGGAACGGC
GGTGGTGCGACAGCAGGGTTTACCGTAAACATGCGAGGCGCCGCGGCAAA
ACCGCGCTTACGCCGGATTCCCCATGAAACTCGGGAGCTTGGCGCATGAG
GTGGGGGGTTCTTGGGGAGAGGAATGGGCTATCAGTGCCCATTGGGCGTC
AGCTGACGTTGGGGGCACGCTCCCCTTCTGTTAATAAGGTATTAATGGCG
GCGGCAACTGCTGCTGCGTGTCGGTGCACTGTCTGGTGATCGTTGCGAAT
GAGCACCGTCCCGTGTGCAGTTTAGGTTACAG
back to top

protein sequence of jgi.p|Trimin1|353798

>Trimin1|353798|estExt_Genemark1.C_Ctg_1850001 ID=Trimin1|353798|estExt_Genemark1.C_Ctg_1850001|Name=jgi.p|Trimin1|353798|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=129bp
MQVSSLTRRLLDLGFSRHMQALGSVGGSCLLLLAIFAGLLAWTYVLPSMA
EPGRAAHGILTRRALPPPAPVAAAPSTLLLPLLLLCQRSGTGGSAAAAPP
QRRAQPAGACGSAHWSGLAGGARRYLCP*
back to top

mRNA from alignment at Contig_185:83..2020+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15456 ID=mRNA_15456|Name=jgi.p|Trimin1|353798|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1938bp|location=Sequence derived from alignment at Contig_185:83..2020+ (Tribonema minus UTEX_B_3156 )
ATGCAGGTGAGCTCTCTCACGTCGCAGCAGGATTGCGTGTGGCGAAGTCC
CGCAGAGCGCGTTCGAATGAGTGGAAGTTGGGGCACGCGCACGCGGCAGG
CGGCGCCTGCTTGACCTCGGCTTCTCGCGCCACATGCAGGTGAGCTCTTG
CACGTCGCAGCAGCTGCGTGCATGGTATGGTGCGCATGGTGCGCGTGAGC
GCGCGCGCAGTGAATTTGAACAATTTAAAGTTGGGGCGCCTGCGTCGACC
TCGGGTTCTCGCGCTGCATGCAGGTGAGCTGTATTTTCAGCTGCTCACGC
GCAAGGTGCGCGTGGTTCCAGAAAGCGTAGAGTGTATTGGGTGAGTTGAA
GCTGAGGCGCTTGCGTTGACCTGGACGCCCCGCGCCACATGGAGGTGCGC
TCTCTTGCGTCGCAGCAAATGCGCGCGCCATGCGGTGAAGTTCCGCGAAG
CGCGTGCGTTTGTATGAGCTGAAGTTGGGGCGCGGCGCGGCTGCGCCTGC
TCGACGTCGATTTCTCGCGCCACAGGCAAGTTTCGGCGCGTTCCTCTCTC
AAGTTTTCAAGTTGAATTTTGAACTGCAGGCAGCGGCACGCGCTTGACCT
CAGCTTTTCCCGCCACATGCAGGTGTGCGTATGCGCTCCTGCCATCGTGC
GCCTCTCGAAGCCTGAAAGCACTGGCTTTTTAGTGCGCGTGGCTGGCTGA
CCTTGACTCCTCGCTCCACATCTACAAGTGATGCTGTTGCAAGCGGCGCA
CTTCAGGTGCTGAAGTTGAAGTTGATGTACCAAGGCGGCGGCGTCTGCTT
CAAGTTGGTCTCGCGCCACATGCATGTGGGCGCTTTTTAGCAGCGTGCGC
GCGCCTTCCTGAACTTGCAGGAGTTAAAGTTGAAGGTGTTTTCGTGACCC
ATGCGCGCTGGCTGGACTCGCAAGAGCTGAATGCAGACGGGTGTTATGCC
TGCCACGGCGGCTGCCGCATATGCCGCTGCTGTGCCGGCTTAGCCCTTTT
TATTAGAGCAAAACAATGTACTTCGAAGTACTTCAAGTATCAGGTGCGAA
GCGTGCGCCAACGACGCGCGCTCTGCCGCTGCTCAACCCGTGCAGAAACC
GCCCACCACAACCCCCCCCCGCACGCAAAAGTCCCTGTCACACTCATTCA
CTAAATCCTTCTGCCCCTGTCACTGCCCCCCCCCCCCCCCCCCTCCTTCA
GGCACTGGGCAGTGTCGGCGGCTCGTGCCTGCTCCTCCTGGCCATCTTTG
CGGGCCTCCTCGCGTGGACGTACGTGCTGCCGAGCATGGCGGAGCCCGGC
CGCGCCGCGCACGGCATCCTCACGTAGCGGCGCTCCGCGCACGCGCGCCG
CCGCTGCAGCGACGTGTCGCTCTCCTCGCTCCGCAGAGGCGCCGCGCGCT
GCCGCCGCCCGCGCCTGTGGCAGCAGCGCCCAGCACGCTGCTGCTGCCGC
TGCTGCTGCTGTGTCAGCGTTCGGGCACTGGCGGCAGCGCTGCCGCCGCG
CCGCCGCAGCGGCGCGCGCAGCCGGCCGGTGCATGCGGCAGCGCTCATTG
GAGCGGGCTGGCCGGCGGTGCGCGGCGGTACCTGTGCCCTTGAGCGCATT
GGATCTGGTTGGCGCCTGTAGCTGTTCGATGTCAGTGTCCATGTCGTGGG
AACGGCGGTGGTGCGACAGCAGGGTTTACCGTAAACATGCGAGGCGCCGC
GGCAAAACCGCGCTTACGCCGGATTCCCCATGAAACTCGGGAGCTTGGCG
CATGAGGTGGGGGGTTCTTGGGGAGAGGAATGGGCTATCAGTGCCCATTG
GGCGTCAGCTGACGTTGGGGGCACGCTCCCCTTCTGTTAATAAGGTATTA
ATGGCGGCGGCAACTGCTGCTGCGTGTCGGTGCACTGTCTGGTGATCGTT
GCGAATGAGCACCGTCCCGTGTGCAGTTTAGGTTACAG
back to top

Coding sequence (CDS) from alignment at Contig_185:83..2020+

>mRNA_15456 ID=mRNA_15456|Name=jgi.p|Trimin1|353798|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=387bp|location=Sequence derived from alignment at Contig_185:83..2020+ (Tribonema minus UTEX_B_3156 )
ATGCAGGTGAGCTCTCTCACGCGGCGCCTGCTTGACCTCGGCTTCTCGCG
CCACATGCAGGCACTGGGCAGTGTCGGCGGCTCGTGCCTGCTCCTCCTGG
CCATCTTTGCGGGCCTCCTCGCGTGGACGTACGTGCTGCCGAGCATGGCG
GAGCCCGGCCGCGCCGCGCACGGCATCCTCACGCGCCGCGCGCTGCCGCC
GCCCGCGCCTGTGGCAGCAGCGCCCAGCACGCTGCTGCTGCCGCTGCTGC
TGCTGTGTCAGCGTTCGGGCACTGGCGGCAGCGCTGCCGCCGCGCCGCCG
CAGCGGCGCGCGCAGCCGGCCGGTGCATGCGGCAGCGCTCATTGGAGCGG
GCTGGCCGGCGGTGCGCGGCGGTACCTGTGCCCTTGA
back to top