mRNA_15292 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|352677
Unique Name	mRNA_15292
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|352677 vs. uniprot
Match: A0A836CL35_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL35_9STRA)

HSP 1 Score: 1070 bits (2767), Expect = 0.000e+0
Identity = 536/536 (100.00%), Postives = 536/536 (100.00%), Query Frame = 1

Query:    1 MSSSTGRHPRLEGSMLEDDGLMMRVLEYLEDWAHTRVSKDFRRTYLQIHHPSEDALAMAVDLGTMQCVADFLDARQSGPGSSVHGTPSPGLLAHAVHHAKRDIACLLKERGADEHHVLVAIAAASVGDVAALRDAVPIMPPRDAFHTKSLDYIASAALASPRPIDTMAAVIECGFPVHVPQTAGVAALDAHNMDAYRAVLMTRTPGVEHPVDTVQAAVARGFQLRSALCSMAFAVGSGSLPLCEWLAQHTRMTKFPKGCVPGSGLVEKSAMCSGAMFACIADAADAAGVSWSCSEALERALRTKNFAVAKQLVRWRNMSPAMWTVAMQTGDTSVLSFLHELDPMPAHVAQEALCRYCASFVLSHEATMLWLVAHGGTLNEHMILSLREGAAESAMRRRNGPRNAAHLTHAALPDWLAAIVVRCIGATQVSEEDRIAAARHACKTNDMGLLALCGEVTFTGEESADDRRIATLATQDGPHMLLIPATRKTHADAANRNISARMPELSAEYPGWDGLYTAHYRRWYAATVEGGGNSGL 1608
            MSSSTGRHPRLEGSMLEDDGLMMRVLEYLEDWAHTRVSKDFRRTYLQIHHPSEDALAMAVDLGTMQCVADFLDARQSGPGSSVHGTPSPGLLAHAVHHAKRDIACLLKERGADEHHVLVAIAAASVGDVAALRDAVPIMPPRDAFHTKSLDYIASAALASPRPIDTMAAVIECGFPVHVPQTAGVAALDAHNMDAYRAVLMTRTPGVEHPVDTVQAAVARGFQLRSALCSMAFAVGSGSLPLCEWLAQHTRMTKFPKGCVPGSGLVEKSAMCSGAMFACIADAADAAGVSWSCSEALERALRTKNFAVAKQLVRWRNMSPAMWTVAMQTGDTSVLSFLHELDPMPAHVAQEALCRYCASFVLSHEATMLWLVAHGGTLNEHMILSLREGAAESAMRRRNGPRNAAHLTHAALPDWLAAIVVRCIGATQVSEEDRIAAARHACKTNDMGLLALCGEVTFTGEESADDRRIATLATQDGPHMLLIPATRKTHADAANRNISARMPELSAEYPGWDGLYTAHYRRWYAATVEGGGNSGL
Sbjct:    1 MSSSTGRHPRLEGSMLEDDGLMMRVLEYLEDWAHTRVSKDFRRTYLQIHHPSEDALAMAVDLGTMQCVADFLDARQSGPGSSVHGTPSPGLLAHAVHHAKRDIACLLKERGADEHHVLVAIAAASVGDVAALRDAVPIMPPRDAFHTKSLDYIASAALASPRPIDTMAAVIECGFPVHVPQTAGVAALDAHNMDAYRAVLMTRTPGVEHPVDTVQAAVARGFQLRSALCSMAFAVGSGSLPLCEWLAQHTRMTKFPKGCVPGSGLVEKSAMCSGAMFACIADAADAAGVSWSCSEALERALRTKNFAVAKQLVRWRNMSPAMWTVAMQTGDTSVLSFLHELDPMPAHVAQEALCRYCASFVLSHEATMLWLVAHGGTLNEHMILSLREGAAESAMRRRNGPRNAAHLTHAALPDWLAAIVVRCIGATQVSEEDRIAAARHACKTNDMGLLALCGEVTFTGEESADDRRIATLATQDGPHMLLIPATRKTHADAANRNISARMPELSAEYPGWDGLYTAHYRRWYAATVEGGGNSGL 536

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352677 vs. uniprot

BLAST of jgi.p|Trimin1|352677 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CL35_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_128	contig	Contig_128:105595..108186 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|352677\|estExt_Genemark1.C_Ctg_1280013
Hectar predicted targeting category	other localisation
TranscriptId	352999
Track	FilteredModels1
ProteinId	352677

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352677	gene_15292	Tribonema minus UTEX_B_3156	gene	Contig_128 105595..108186 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_15292_1	exon_15292_1	Tribonema minus UTEX_B_3156	exon	Contig_128 105595..106223 +
exon_15292_2	exon_15292_2	Tribonema minus UTEX_B_3156	exon	Contig_128 106347..106484 +
exon_15292_3	exon_15292_3	Tribonema minus UTEX_B_3156	exon	Contig_128 106557..107073 +
exon_15292_4	exon_15292_4	Tribonema minus UTEX_B_3156	exon	Contig_128 107860..108186 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_15292	CDS_15292	Tribonema minus UTEX_B_3156	CDS	Contig_128 105595..106223 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352677	Trimin1\|352677\|estExt_Genemark1.C_Ctg_1280013	Tribonema minus UTEX_B_3156	polypeptide	Contig_128 105595..108186 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_128:105595..108186+
coding sequence from alignment at Contig_128:105595..108186+

spliced messenger RNA

>mRNA_15292 ID=mRNA_15292|Name=jgi.p|Trimin1|352677|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1611bp|location=Sequence derived from alignment at Contig_128:105595..108186+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAGCAGCACCGGCAGGCACCCCCGCCTGGAGGGCTCCATGCTGGA
GGACGACGGCCTCATGATGCGCGTCCTCGAGTACCTGGAGGACTGGGCCC
ACACCCGTGTCAGCAAGGACTTCAGGCGCACTTACCTCCAGATCCACCAC
CCCAGCGAGGACGCCCTGGCGATGGCGGTGGACCTGGGCACGATGCAGTG
CGTGGCAGATTTTCTGGACGCCAGGCAGAGCGGGCCGGGCAGCAGCGTCC
ACGGAACCCCTTCGCCCGGCCTGCTCGCCCACGCGGTGCACCACGCCAAG
CGCGACATCGCCTGCCTTCTCAAGGAGAGGGGAGCGGACGAGCACCACGT
CTTGGTCGCCATCGCCGCCGCGTCCGTTGGTGACGTCGCAGCGCTGCGCG
ACGCCGTGCCTATCATGCCGCCCCGGGACGCCTTTCACACCAAGTCCCTC
GACTACATAGCCTCTGCAGCTCTTGCTTCGCCCCGTCCCATCGATACCAT
GGCAGCAGTGATTGAGTGCGGCTTCCCCGTGCACGTGCCGCAAACGGCAG
GCGTTGCCGCGCTTGACGCGCACAACATGGACGCTTACCGTGCCGTTCTC
ATGACGCGAACCCCCGGCGTTGAGCACCCCGTCGACACGGTCCAGGCTGC
GGTCGCCAGGGGCTTCCAACTCCGCAGTGCGCTGTGTTCAATGGCGTTTG
CGGTGGGGAGCGGCAGCTTGCCCCTGTGCGAGTGGCTGGCGCAGCACACG
CGCATGACCAAGTTCCCCAAGGGGTGCGTGCCAGGGAGCGGTCTGGTGGA
GAAAAGCGCAATGTGCTCTGGCGCAATGTTCGCGTGCATCGCCGACGCAG
CCGATGCCGCCGGCGTGTCGTGGAGCTGCTCGGAGGCACTGGAGAGAGCC
CTCCGTACCAAGAACTTTGCTGTTGCAAAACAGCTCGTGCGCTGGCGCAA
CATGTCGCCCGCAATGTGGACAGTGGCGATGCAAACAGGCGACACCTCTG
TCCTGTCCTTTCTGCACGAGCTCGACCCCATGCCAGCCCACGTGGCGCAG
GAGGCGCTGTGTCGCTACTGCGCGAGCTTTGTTTTGAGCCATGAGGCCAC
GATGCTGTGGCTCGTAGCGCACGGCGGCACGCTCAACGAGCACATGATCC
TATCGCTGAGGGAGGGAGCCGCAGAGTCCGCCATGCGCCGACGCAACGGC
CCACGCAACGCCGCGCACCTGACGCACGCTGCCCTGCCAGACTGGTTGGC
GGCCATTGTGGTGCGATGCATTGGCGCCACCCAGGTGTCGGAGGAGGATC
GCATCGCGGCCGCGCGACACGCATGCAAGACGAATGACATGGGGCTCCTG
GCGCTGTGCGGCGAGGTCACCTTCACGGGTGAGGAAAGCGCTGACGACCG
GCGCATAGCGACACTGGCGACGCAGGATGGTCCGCACATGCTGCTGATCC
CCGCCACGCGCAAGACACACGCTGACGCTGCCAACAGGAACATCTCGGCA
CGCATGCCGGAGCTAAGCGCCGAATACCCGGGTTGGGATGGTCTTTACAC
GGCGCACTACCGCCGCTGGTACGCTGCCACGGTGGAGGGGGGGGGCAACA
GCGGGCTGTAG

protein sequence of jgi.p|Trimin1|352677

>Trimin1|352677|estExt_Genemark1.C_Ctg_1280013 ID=Trimin1|352677|estExt_Genemark1.C_Ctg_1280013|Name=jgi.p|Trimin1|352677|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=537bp
MSSSTGRHPRLEGSMLEDDGLMMRVLEYLEDWAHTRVSKDFRRTYLQIHH
PSEDALAMAVDLGTMQCVADFLDARQSGPGSSVHGTPSPGLLAHAVHHAK
RDIACLLKERGADEHHVLVAIAAASVGDVAALRDAVPIMPPRDAFHTKSL
DYIASAALASPRPIDTMAAVIECGFPVHVPQTAGVAALDAHNMDAYRAVL
MTRTPGVEHPVDTVQAAVARGFQLRSALCSMAFAVGSGSLPLCEWLAQHT
RMTKFPKGCVPGSGLVEKSAMCSGAMFACIADAADAAGVSWSCSEALERA
LRTKNFAVAKQLVRWRNMSPAMWTVAMQTGDTSVLSFLHELDPMPAHVAQ
EALCRYCASFVLSHEATMLWLVAHGGTLNEHMILSLREGAAESAMRRRNG
PRNAAHLTHAALPDWLAAIVVRCIGATQVSEEDRIAAARHACKTNDMGLL
ALCGEVTFTGEESADDRRIATLATQDGPHMLLIPATRKTHADAANRNISA
RMPELSAEYPGWDGLYTAHYRRWYAATVEGGGNSGL*

mRNA from alignment at Contig_128:105595..108186+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_15292 ID=mRNA_15292|Name=jgi.p|Trimin1|352677|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2592bp|location=Sequence derived from alignment at Contig_128:105595..108186+ (Tribonema minus UTEX_B_3156 )
ATGAGCAGCAGCACCGGCAGGCACCCCCGCCTGGAGGGCTCCATGCTGGA
GGACGACGGCCTCATGATGCGCGTCCTCGAGTACCTGGAGGACTGGGCCC
ACACCCGTGTCAGCAAGGACTTCAGGCGCACTTACCTCCAGATCCACCAC
CCCAGCGAGGACGCCCTGGCGATGGCGGTGGACCTGGGCACGATGCAGTG
CGTGGCAGATTTTCTGGACGCCAGGCAGAGCGGGCCGGGCAGCAGCGTCC
ACGGAACCCCTTCGCCCGGCCTGCTCGCCCACGCGGTGCACCACGCCAAG
CGCGACATCGCCTGCCTTCTCAAGGAGAGGGGAGCGGACGAGCACCACGT
CTTGGTCGCCATCGCCGCCGCGTCCGTTGGTGACGTCGCAGCGCTGCGCG
ACGCCGTGCCTATCATGCCGCCCCGGGACGCCTTTCACACCAAGTCCCTC
GACTACATAGCCTCTGCAGCTCTTGCTTCGCCCCGTCCCATCGATACCAT
GGCAGCAGTGATTGAGTGCGGCTTCCCCGTGCACGTGCCGCAAACGGCAG
GCGTTGCCGCGCTTGACGCGCACAACATGGACGCTTACCGTGCCGTTCTC
ATGACGCGAACCCCCGGCGTTGAGCACCCGTCACTGATTTTCGAACGCCA
AGCCGCGCTGCTTTGGGGCGATAAGGAAGCATTCGAAGTGACGTGTCATG
GCCTGCAGGGCCCAAGTTGCGATCTCACAACCTTGCTTCTCCGATCCGGC
AGCGTCGACACGGTCCAGGCTGCGGTCGCCAGGGGCTTCCAACTCCGCAG
TGCGCTGTGTTCAATGGCGTTTGCGGTGGGGAGCGGCAGCTTGCCCCTGT
GCGAGTGGCTGGCGCAGCACACGCGCATGACCAAGTTCCCGTAAAACCTG
CTGGCGCACGTCCGACTCACGCAGTCTGAGGGCGATGTTGCCGTTGCGCG
CTGGCTCATCAGCAAGGGGTGCGTGCCAGGGAGCGGTCTGGTGGAGAAAA
GCGCAATGTGCTCTGGCGCAATGTTCGCGTGCATCGCCGACGCAGCCGAT
GCCGCCGGCGTGTCGTGGAGCTGCTCGGAGGCACTGGAGAGAGCCCTCCG
TACCAAGAACTTTGCTGTTGCAAAACAGCTCGTGCGCTGGCGCAACATGT
CGCCCGCAATGTGGACAGTGGCGATGCAAACAGGCGACACCTCTGTCCTG
TCCTTTCTGCACGAGCTCGACCCCATGCCAGCCCACGTGGCGCAGGAGGC
GCTGTGTCGCTACTGCGCGAGCTTTGTTTTGAGCCATGAGGCCACGATGC
TGTGGCTCGTAGCGCACGGCGGCACGCTCAACGAGCACATGATCCTATCG
CTGAGGGAGGGAGCCGCAGAGTCCGCCATGCGCCGACGCAACGGCCCACG
CAACGCCGCGCACCTGACGCACGCTGCCCTGCCAGACTGGTTGGCGGCCA
TTGTGGTGCGATGCATTGGCGCCACCCAGGTGAGCGCTCATGCCAATGCC
TCGTTGCCGGCTTCGGTGGTATGGATGTGTGAAGGTGATAACTCCGCTCT
CTTGACTAGGGATGCGCAAGTTAGCCGTGAGGGCTCGCAAGTCCGTACAT
ACCTATTGCGGAGTATACATGCAATTTGAAGTTTGTATCCTGCGGGGTAC
AACAGCAGGCTGTATACGCCGCCATCTATGTTTCCTGCTTGCTGCGCTGT
GCGGCCCTCTTGCCAATGCAGTGCACGTGTGTTGCATGGACACGTTGTAA
CGTGTGTCACAAATGAGACCGAGCAACTGAGCTGTGTAAAGCAGTGCATA
TGCCAAAGTACTGATTCCGCAACGCAATTGACACCTCAAGTCCTTGAGGG
TGAGTGCATGCATGCAGATAAGGCACATGCATATATACTATAGTCATGCT
GTCATGTGCCGATGCCTGTCTGTCATGTTGTGGTGTGCAGTATGAAACGG
CGCAGCGCATTCGTACATGCTTGTCTGAAGCATGCTGCAGGCATGCTGTT
GTCGTGTGCTGTACTACGCCATGATGCTGGGAGTGATGCCATGCTCAGCG
GCACGCATGCGGGAATGCACCTCCCCCATGAAGTACTACATTGGCACTTG
CGAATGTACATGAACCTGTACGCATGTATACACAACATACAGATATACGC
CATATAGGTTGTCGTATACTTCAAAGTATACATTTTGTTGCAAATCTTGT
CAGCAGTCGTGAGGGACAGTGCAATGACTGCCTGTCTGTCTGTCTGCTCT
CTCATGCATTCACAGGTGTCGGAGGAGGATCGCATCGCGGCCGCGCGACA
CGCATGCAAGACGAATGACATGGGGCTCCTGGCGCTGTGCGGCGAGGTCA
CCTTCACGGGTGAGGAAAGCGCTGACGACCGGCGCATAGCGACACTGGCG
ACGCAGGATGGTCCGCACATGCTGCTGATCCCCGCCACGCGCAAGACACA
CGCTGACGCTGCCAACAGGAACATCTCGGCACGCATGCCGGAGCTAAGCG
CCGAATACCCGGGTTGGGATGGTCTTTACACGGCGCACTACCGCCGCTGG
TACGCTGCCACGGTGGAGGGGGGGGGCAACAGCGGGCTGTAG

Coding sequence (CDS) from alignment at Contig_128:105595..108186+

>mRNA_15292 ID=mRNA_15292|Name=jgi.p|Trimin1|352677|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1611bp|location=Sequence derived from alignment at Contig_128:105595..108186+ (Tribonema minus UTEX_B_3156 )
ATGAGCAGCAGCACCGGCAGGCACCCCCGCCTGGAGGGCTCCATGCTGGA
GGACGACGGCCTCATGATGCGCGTCCTCGAGTACCTGGAGGACTGGGCCC
ACACCCGTGTCAGCAAGGACTTCAGGCGCACTTACCTCCAGATCCACCAC
CCCAGCGAGGACGCCCTGGCGATGGCGGTGGACCTGGGCACGATGCAGTG
CGTGGCAGATTTTCTGGACGCCAGGCAGAGCGGGCCGGGCAGCAGCGTCC
ACGGAACCCCTTCGCCCGGCCTGCTCGCCCACGCGGTGCACCACGCCAAG
CGCGACATCGCCTGCCTTCTCAAGGAGAGGGGAGCGGACGAGCACCACGT
CTTGGTCGCCATCGCCGCCGCGTCCGTTGGTGACGTCGCAGCGCTGCGCG
ACGCCGTGCCTATCATGCCGCCCCGGGACGCCTTTCACACCAAGTCCCTC
GACTACATAGCCTCTGCAGCTCTTGCTTCGCCCCGTCCCATCGATACCAT
GGCAGCAGTGATTGAGTGCGGCTTCCCCGTGCACGTGCCGCAAACGGCAG
GCGTTGCCGCGCTTGACGCGCACAACATGGACGCTTACCGTGCCGTTCTC
ATGACGCGAACCCCCGGCGTTGAGCACCCCGTCGACACGGTCCAGGCTGC
GGTCGCCAGGGGCTTCCAACTCCGCAGTGCGCTGTGTTCAATGGCGTTTG
CGGTGGGGAGCGGCAGCTTGCCCCTGTGCGAGTGGCTGGCGCAGCACACG
CGCATGACCAAGTTCCCCAAGGGGTGCGTGCCAGGGAGCGGTCTGGTGGA
GAAAAGCGCAATGTGCTCTGGCGCAATGTTCGCGTGCATCGCCGACGCAG
CCGATGCCGCCGGCGTGTCGTGGAGCTGCTCGGAGGCACTGGAGAGAGCC
CTCCGTACCAAGAACTTTGCTGTTGCAAAACAGCTCGTGCGCTGGCGCAA
CATGTCGCCCGCAATGTGGACAGTGGCGATGCAAACAGGCGACACCTCTG
TCCTGTCCTTTCTGCACGAGCTCGACCCCATGCCAGCCCACGTGGCGCAG
GAGGCGCTGTGTCGCTACTGCGCGAGCTTTGTTTTGAGCCATGAGGCCAC
GATGCTGTGGCTCGTAGCGCACGGCGGCACGCTCAACGAGCACATGATCC
TATCGCTGAGGGAGGGAGCCGCAGAGTCCGCCATGCGCCGACGCAACGGC
CCACGCAACGCCGCGCACCTGACGCACGCTGCCCTGCCAGACTGGTTGGC
GGCCATTGTGGTGCGATGCATTGGCGCCACCCAGGTGTCGGAGGAGGATC
GCATCGCGGCCGCGCGACACGCATGCAAGACGAATGACATGGGGCTCCTG
GCGCTGTGCGGCGAGGTCACCTTCACGGGTGAGGAAAGCGCTGACGACCG
GCGCATAGCGACACTGGCGACGCAGGATGGTCCGCACATGCTGCTGATCC
CCGCCACGCGCAAGACACACGCTGACGCTGCCAACAGGAACATCTCGGCA
CGCATGCCGGAGCTAAGCGCCGAATACCCGGGTTGGGATGGTCTTTACAC
GGCGCACTACCGCCGCTGGTACGCTGCCACGGTGGAGGGGGGGGGCAACA
GCGGGCTGTAG