mRNA_15220 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|143452 vs. uniprot
Match: A0A835ZDJ6_9STRA (HECT domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDJ6_9STRA) HSP 1 Score: 385 bits (989), Expect = 2.050e-135 Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1 Query: 1 PVTAAPMVLQPVELADMVCGPPGDGSASDFNFRETFHITEDSDFQDVHELRDAFWEVVDTMMVQEKWGLLLFITGVRRLPPPKTELMAIELQYMPPEARAGSNRSASASDAAQSLLGRVPCAHTCDNVLEVPDYWTALVTEAGFDPKRGLPASAKLMGDLRQKLRKHLRDKLLLAIANAQGYGLDGISSSMG 576 PVTAAPMVLQPVELADMVCGPPGDGSASDFNFRETFHITEDSDFQDVHELRDAFWEVVDTMMVQEKWGLLLFITGVRRLPPPKTELMAIELQYMPPEARAGSNRSASASDAAQSLLGRVPCAHTCDNVLEVPDYWTALVTEAGFDPKRGLPASAKLMGDLRQKLRKHLRDKLLLAIANAQGYGLDGISSSMG Sbjct: 1 PVTAAPMVLQPVELADMVCGPPGDGSASDFNFRETFHITEDSDFQDVHELRDAFWEVVDTMMVQEKWGLLLFITGVRRLPPPKTELMAIELQYMPPEARAGSNRSASASDAAQSLLGRVPCAHTCDNVLEVPDYWTALVTEAGFDPKRGLPASAKLMGDLRQKLRKHLRDKLLLAIANAQGYGLDGISSSMG 192
BLAST of jgi.p|Trimin1|143452 vs. uniprot
Match: A0A7S3Y0V5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0V5_HETAK) HSP 1 Score: 103 bits (257), Expect = 6.080e-24 Identity = 65/165 (39.39%), Postives = 88/165 (53.33%), Query Frame = 1 Query: 85 DFNFRETFHITEDSDFQ-DVHELRDAFWEVVDTMMVQEKWGLLLFITGVRRLPPPKTELMAIELQYMPPEARAGSNRSASASDAAQSLLGRVPCAHTCDNVLEVPDYWTALVTEAGFDPKRGLPASAKLMGDLRQKLRKHLRDKLLLAIANAQGYGLDGISSSMG 576 DF+ RE F + D D + EL A WEV + + K LL+F+TGV LP P TE + IE ++P D + +LG +P +HTCDN+LE+PDY AL G P G +LR+ LR KLLLA+ N++GYGLD ++SS G Sbjct: 62 DFDLREVFQVVVDRDLERGSPELVAALWEVAAALSPELKRQLLVFVTGVSTLPAPFTEFLTIEQPFVPLH-----------KDDYKKILGMLPQSHTCDNILELPDYAGALRALEGRPPSPG-------------RLRELLRGKLLLAVQNSEGYGLDEVTSSGG 202
BLAST of jgi.p|Trimin1|143452 vs. uniprot
Match: A0A7S3ZUA9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZUA9_9STRA) HSP 1 Score: 104 bits (259), Expect = 1.870e-22 Identity = 66/205 (32.20%), Postives = 101/205 (49.27%), Query Frame = 1 Query: 37 ELADMVCGPPGDGSASDFNFRETFHITEDSDFQDVHELRDAFWEVVD---------------------------TMMVQEKWGLLLFITGVRRLPPPKTELMAIELQYMPPEARAGSNRSASASDAAQSLLGRVPCAHTCDNVLEVPDYWTALV---TEAGFDPKRGLPASAKLMGDLRQKLRKHLRDKLLLAIANAQGYGLDGI 561 +L + CG P DF FR+ F + D++ +D L DA W VVD + ++ LL+F+TGV RLP E + +EL ++P D + +L VP +HTCDN+LE+P+YW AL+ T+ P+RG ++ L ++LR+ +R+KLL+A+ NA GYGLD + Sbjct: 1458 DLQRVACGAPE--VRGDFRFRDVFRVVMDAELRDCRPLHDALWAVVDGEDDALNDLELKKIDDLTGEEAPRRCEPLTPAQRRKLLVFVTGVSRLPARHAEFLTVELPFLP-----------FGVDEQRRMLAMVPQSHTCDNILELPNYWEALLKTKTDEARPPRRG----SRECNALERELRRIVREKLLVALDNAVGYGLDAL 1645
BLAST of jgi.p|Trimin1|143452 vs. uniprot
Match: W2RG80_PHYPN (HECT domain-containing protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2RG80_PHYPN) HSP 1 Score: 103 bits (256), Expect = 4.550e-22 Identity = 65/176 (36.93%), Postives = 91/176 (51.70%), Query Frame = 1 Query: 37 ELADMVCGPPGDGSASDFNFRETFHITEDSDFQDVHELRDAFWEVVDTMMVQEKWGLLLFITGVRRLPPPKTELMAIELQYMPPEARAGSNRSASASDAAQSLLGRVPCAHTCDNVLEVPDYWTALVTEAGFDPKRGLPASAKLMGDLRQKLRKHLRDKLLLAIANAQGYGLDGIS 564 +L + +CG G G DF E F + D+DF L +AFW+ V++ Q K + F+TGV LP P TE + IE+ + +A +SD + +P AHTCDN+LE+P+YW AL D K ++KL +L L K LRD A+ + GYGLDG S Sbjct: 1286 DLVESICGSNG-GPGDDFVINEVFRVAADTDFTGCRALMNAFWQTVNSFEPQLKRKFIKFVTGVDTLPLPGTEFLRIEMPF-----------TAISSDDHKKCAQMLPQAHTCDNMLELPNYWKALCWREKHDEKE---PNSKLEEELVLLLSKKLRD----AVEYSSGYGLDGTS 1442
BLAST of jgi.p|Trimin1|143452 vs. uniprot
Match: A0A7S3FRM6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FRM6_9CHLO) HSP 1 Score: 99.4 bits (246), Expect = 2.990e-21 Identity = 66/183 (36.07%), Postives = 98/183 (53.55%), Query Frame = 1 Query: 37 ELADMVCGPPGDG--SASDFNFRETFHITEDSDFQDVH-ELRDAFWEVVDTMMVQEKWGLLLFITGVRRLPPPKTELMAIELQYMPPEARAGSNRSASASDAAQSLLGRVPCAHTCDNVLEVPDYWTALVTEAGFDPKRGLPASAKLMGDLRQKLRKHLRDKLLLAIANAQGYGLDGISSSMG 576 +L + VCG P + S+ + R+ F + D + +D +L DA W+V+D + +K F+TG RLP PKTE++ +EL + + S D A+ LLG +P AHTC+N+LE+P+YW +L+ RG A DL +LR+ L D+L A+AN Y LD IS G Sbjct: 214 KLREAVCGEPAEERLSSKRVSLRDVFVVQCDEELRDSWPDLDDALWQVLDAWPLPKKLDFAKFVTGTDRLPLPKTEMIKVELPFF----------AFSDHDHAR-LLGTLPQAHTCENLLELPNYWESLLHV------RGQGAGGGARQDLLAELRRTLDDRLSFAVANCDTYALDTISHHAG 379
BLAST of jgi.p|Trimin1|143452 vs. uniprot
Match: A0A6G0WMF8_9STRA (HECT domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WMF8_9STRA) HSP 1 Score: 100 bits (249), Expect = 3.330e-21 Identity = 64/182 (35.16%), Postives = 95/182 (52.20%), Query Frame = 1 Query: 22 VLQPVELADMVCGPPGDGSASDFNFRETFHITEDSDFQDVHELRDAFWEVVDTMMVQEKWGLLLFITGVRRLPPPKTELMAIELQYMPPEARAGSNRSASASDAAQSLLGRVPCAHTCDNVLEVPDYWTALVTEAGFDPKRGLPASAKLMGDLRQKLRKHLRDKLLLAIANAQGYGLDGISS 567 ++ +VCGP DFN R+ F ++ D +F L +A W ++D + +K + F+TGV +LP P TE++ IEL Y SAS+ A+ LL +P AHTCDNVLE+P+YWTAL + + P L+ + +++KL+ AI N YGLD +SS Sbjct: 352 MIMDYNFQSLVCGPV---PREDFNIRDIFLVSMDEEFTQCQYLHNAVWNILDNLSPSDKRRFVKFVTGVDKLPVPGTEILRIELPYT----------VISASERAKQLLV-LPQAHTCDNVLELPNYWTALCEKF----RDSSPTYDMLV--------QIVKEKLMYAIENGNNYGLDVVSS 507
BLAST of jgi.p|Trimin1|143452 vs. uniprot
Match: A0A833WPR6_PHYIN (HECT domain-containing protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WPR6_PHYIN) HSP 1 Score: 99.4 bits (246), Expect = 9.880e-21 Identity = 63/181 (34.81%), Postives = 91/181 (50.28%), Query Frame = 1 Query: 25 LQPVELADMVCGPPGDGSASDFNFRETFHITEDSDFQDVHELRDAFWEVVDTMMVQEKWGLLLFITGVRRLPPPKTELMAIELQYMPPEARAGSNRSASASDAAQSLLGRVPCAHTCDNVLEVPDYWTALVTEAGFDPKRGLPASAKLMGDLRQKLRKHLRDKLLLAIANAQGYGLDGISS 567 + +L + +CG G + DF E F + D+DF D L + FW+ V+ K L+ F+TGV LP TE + IE+ + +A +SD + L +P AHTCDN LE+P+YW AL D A++KL +KL+ L KL A+ + GYGLDG S+ Sbjct: 1261 ISEADLVESICG-SSSGPSDDFFINEVFRVVADTDFTDCQPLMNVFWQTVNGFEPHLKRKLIKFVTGVDTLPLAGTEFLRIEMPF-----------TAISSDDHKKCLQMLPQAHTCDNTLELPNYWKALCWREQHDEHE---ANSKL----EEKLKLLLSKKLYDAVEYSSGYGLDGTSA 1422
BLAST of jgi.p|Trimin1|143452 vs. uniprot
Match: A0A329SKM6_9STRA (HECT domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A329SKM6_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 9.900e-21 Identity = 63/180 (35.00%), Postives = 94/180 (52.22%), Query Frame = 1 Query: 37 ELADMVCGPPGDGSASDFNFRETFHITEDSDFQDVHELRDAFWEVVDTMMVQEKWGLLLFITGVRRLPPPKTELMAIELQYMPPEARAGSNRSASASDAAQSLLGRVPCAHTCDNVLEVPDYWTALVTEAGFDPKRGLPASAKLMGDLRQKLRKHLRDKLLLAIANAQGYGLDGISSSMG 576 +L + +CG DG DF E F + D+DF + L +AFW+ V+ +Q K + F+TGV LP TE + IE+ + +A +S+ + L +P AHTCDN+LE+P+YW AL D A++KL +L + K LRD A+ + GYGLDG ++ G Sbjct: 1288 DLVESICG-SSDGPGDDFIVNEVFRVAADTDFTNCLPLWNAFWQTVNGFELQLKRKFIRFVTGVDTLPLTGTEFLRIEMPF-----------TAISSEDHKKCLQMLPQAHTCDNMLELPNYWKALCWREQHDEHE---ANSKLEEELALLISKKLRD----AVEYSNGYGLDGTTAVAG 1448
BLAST of jgi.p|Trimin1|143452 vs. uniprot
Match: A0A1V9YEH2_9STRA (HECT domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YEH2_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 1.300e-20 Identity = 61/173 (35.26%), Postives = 92/173 (53.18%), Query Frame = 1 Query: 37 ELADMVCGPPGDGSASDFNFRETFHITEDSDFQDVHELRDAFWEVVDTMMVQEKWGLLLFITGVRRLPPPKTELMAIELQYMPPEARAGSNRSASASDAAQSLLGRVPCAHTCDNVLEVPDYWTALVTEAGFDPKRGLPASAKLMGDLRQKLRKHLRDKLLLAIANAQGYGLD 555 EL +++CGPP ++ +F+ R+ F + ED + DAFW VVD EK L+ F+TG+ +LP P+TE++ +++ + + S + +L R+P AHTC+N LE+P+Y+ GL AS DL Q L LR KLL A+A+ GY LD Sbjct: 932 ELHELLCGPP---ASDNFDLRDVFKVVEDDALVGCRPMHDAFWRVVDEFSATEKRALIKFVTGIDKLPLPQTEILRLDMPW-----------PVATSHEKKLVLLRLPQAHTCENTLELPNYYG------------GLDAS----DDLPQALTVLLRTKLLYAMAHGLGYDLD 1074
BLAST of jgi.p|Trimin1|143452 vs. uniprot
Match: R1CYP2_EMIHU (HECT domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CYP2_EMIHU) HSP 1 Score: 96.3 bits (238), Expect = 1.030e-19 Identity = 59/182 (32.42%), Postives = 92/182 (50.55%), Query Frame = 1 Query: 25 LQPVELADMVCGPPGDGSASDFNFRETFHITEDSDFQDVHELRDAFWEVVDTMMVQEKWGLLLFITGVRRLPPPKTELMAIELQYMPPEARAGSNRSASASDAAQSLLGRVPCAHTCDNVLEVPDYWTALVTEAGFDPKRGLPASAKLMGDLRQKLRKHLRDKLLLAIANAQGYGLDGISSS 570 + P +L +VCG P + D R+ F + ED+ LR+A W V+D +EK LL F TG R P P T +++++L + P R +AA +L+ +P AHTCDNVLE+P+Y+ AL G + G P+ +LR + D+ A+++ YGLD + + Sbjct: 435 ISPTQLCAIVCGEP---ESHDRRLRDVFRVVEDAALAGCPPLREALWAVLDGWTEEEKRRLLAFCTGSDRWPQPGTAVLSVQLPFAPRGRR---------EEAAMALM--MPQAHTCDNVLELPNYYLALAASRGEEAGAGPPSPG-----FAAELRSLIHDRFSTAVSHCACYGLDDLGGA 597 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|143452 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15220 ID=mRNA_15220|Name=jgi.p|Trimin1|143452|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=576bp|location=Sequence derived from alignment at Contig_145:272670..274341+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CCTGTGACGGCAGCGCCCATGGTACTACAGCCTGTGGAGCTTGCCGACATback to top protein sequence of jgi.p|Trimin1|143452 >Trimin1|143452|gw1.145.26.1 ID=Trimin1|143452|gw1.145.26.1|Name=jgi.p|Trimin1|143452|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=192bp PVTAAPMVLQPVELADMVCGPPGDGSASDFNFRETFHITEDSDFQDVHELback to top mRNA from alignment at Contig_145:272670..274341+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15220 ID=mRNA_15220|Name=jgi.p|Trimin1|143452|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1672bp|location=Sequence derived from alignment at Contig_145:272670..274341+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_145:272670..274341+ >mRNA_15220 ID=mRNA_15220|Name=jgi.p|Trimin1|143452|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=576bp|location=Sequence derived from alignment at Contig_145:272670..274341+ (Tribonema minus UTEX_B_3156 )back to top |