mRNA_15124 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|4528
Unique Name	mRNA_15124
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|4528 vs. uniprot
Match: A0A835ZHS5_9STRA (PRA1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHS5_9STRA)

HSP 1 Score: 405 bits (1041), Expect = 4.280e-141
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1

Query:   70 MIELPSAPVRAASDGIYSPTSAAPVTFASASETAGGAESTAMETGKVYGLKALAFINSKAQLAPFRMPAELFGLGAVKPFSIPSASDLAVRLKLNLPYYSTNYAALYLALCAMSIITSPTALICLTVTAGGWILLLKTASNPEAEGVSIGSLTVKKQVAFVVMGIVSVFAGLTLLGTLLGWSLWLSAFVATAHAAARDATALADAAEANANRLEGDIEPFLNA 738
            MIELPSAPVRAASDGIYSPTSAAPVTFASASETAGGAESTAMETGKVYGLKALAFINSKAQLAPFRMPAELFGLGAVKPFSIPSASDLAVRLKLNLPYYSTNYAALYLALCAMSIITSPTALICLTVTAGGWILLLKTASNPEAEGVSIGSLTVKKQVAFVVMGIVSVFAGLTLLGTLLGWSLWLSAFVATAHAAARDATALADAAEANANRLEGDIEPFLNA
Sbjct:    1 MIELPSAPVRAASDGIYSPTSAAPVTFASASETAGGAESTAMETGKVYGLKALAFINSKAQLAPFRMPAELFGLGAVKPFSIPSASDLAVRLKLNLPYYSTNYAALYLALCAMSIITSPTALICLTVTAGGWILLLKTASNPEAEGVSIGSLTVKKQVAFVVMGIVSVFAGLTLLGTLLGWSLWLSAFVATAHAAARDATALADAAEANANRLEGDIEPFLNA 223

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|4528 vs. uniprot

BLAST of jgi.p|Trimin1|4528 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZHS5_9STRA	4.280e-141	100.00	PRA1 family protein n=1 Tax=Tribonema minus TaxID=...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_103	contig	Contig_103:404514..407667 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|4528\|CE4527_76
Description	Source PGD
COG category	S
Max annot lvl	121069\|Pythiales
EggNOG OGs	2B17F@1\|root,2S09R@2759\|Eukaryota,1MAZV@121069\|Pythiales
Evalue	1.28e-05
Seed ortholog	65071.PYU1_T000743
Hectar predicted targeting category	other localisation
TranscriptId	4850
Track	FilteredModels1
ProteinId	4528

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|4528	gene_15124	Tribonema minus UTEX_B_3156	gene	Contig_103 404514..407667 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|4528	Trimin1\|4528\|CE4527_76	Tribonema minus UTEX_B_3156	polypeptide	Contig_103 404583..407524 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_15124_1	exon_15124_1	Tribonema minus UTEX_B_3156	exon	Contig_103 404514..404759 +
exon_15124_2	exon_15124_2	Tribonema minus UTEX_B_3156	exon	Contig_103 405753..406018 +
exon_15124_3	exon_15124_3	Tribonema minus UTEX_B_3156	exon	Contig_103 406716..406791 +
exon_15124_4	exon_15124_4	Tribonema minus UTEX_B_3156	exon	Contig_103 407372..407667 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_15124	UTR5_15124	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_103 404514..404582 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_15124	CDS_15124	Tribonema minus UTEX_B_3156	CDS	Contig_103 404583..404759 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_15124	UTR3_15124	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_103 407525..407667 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_103:404514..407667+
coding sequence from alignment at Contig_103:404514..407667+

spliced messenger RNA

>mRNA_15124 ID=mRNA_15124|Name=jgi.p|Trimin1|4528|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=884bp|location=Sequence derived from alignment at Contig_103:404514..407667+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACAAGCCAGACAGAGAGAGTGGCGGCACACACAGCTCTGGCACGCATCAA
GCGCGCCTGCATTGACGGTATGATCGAGTTGCCGAGCGCTCCAGTACGAG
CAGCATCTGACGGCATCTACAGCCCAACGTCGGCGGCTCCGGTCACGTTT
GCGAGTGCCAGCGAGACAGCGGGAGGAGCGGAGAGTACAGCCATGGAGAC
CGGCAAGGTGTACGGCCTGAAGGCGCTGGCTTTCATTAACAGCAAGGCAC
AGCTGGCGCCGTTCCGCATGCCTGCGGAGCTCTTCGGCCTGGGAGCCGTC
AAGCCCTTCTCGATACCCAGCGCATCGGACCTCGCAGTGCGCCTCAAGCT
TAACCTCCCGTACTACTCCACCAACTACGCCGCGCTGTACCTGGCGCTGT
GCGCGATGAGCATCATCACCAGCCCTACGGCGCTGATCTGCCTCACGGTT
ACGGCGGGGGGGTGGATCTTGCTGCTCAAGACGGCCAGCAATCCGGAGGC
GGAGGGAGTCAGCATCGGATCATTGACGGTGAAGAAGCAGGTGGCCTTTG
TGGTGATGGGCATCGTATCAGTGTTCGCAGGCCTGACGCTGTTGGGAACA
CTGCTAGGCTGGAGCCTCTGGCTCAGCGCCTTTGTAGCGACAGCGCACGC
GGCGGCCCGCGACGCGACAGCGCTCGCCGACGCCGCGGAGGCAAACGCCA
ACAGGCTTGAGGGCGACATTGAGCCGTTCCTCAACGCGTAGCAGCAGAAG
CAGTGCTCAGCAGCAGCAGCAGCAGTGCTCAGCGCACGGGTGAAGCAGTG
CTGCGCATTCGCAGCGCAGCGTAGCGCTGTAGCTTGCATGCAGCACCCGG
CCTGCATCTTCAACTGTGAAGTTGCCGCGCTGTC

protein sequence of jgi.p|Trimin1|4528

>Trimin1|4528|CE4527_76 ID=Trimin1|4528|CE4527_76|Name=jgi.p|Trimin1|4528|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=224bp
MIELPSAPVRAASDGIYSPTSAAPVTFASASETAGGAESTAMETGKVYGL
KALAFINSKAQLAPFRMPAELFGLGAVKPFSIPSASDLAVRLKLNLPYYS
TNYAALYLALCAMSIITSPTALICLTVTAGGWILLLKTASNPEAEGVSIG
SLTVKKQVAFVVMGIVSVFAGLTLLGTLLGWSLWLSAFVATAHAAARDAT
ALADAAEANANRLEGDIEPFLNA*

mRNA from alignment at Contig_103:404514..407667+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_15124 ID=mRNA_15124|Name=jgi.p|Trimin1|4528|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3154bp|location=Sequence derived from alignment at Contig_103:404514..407667+ (Tribonema minus UTEX_B_3156 )
ACAAGCCAGACAGAGAGAGTGGCGGCACACACAGCTCTGGCACGCATCAA
GCGCGCCTGCATTGACGGTATGATCGAGTTGCCGAGCGCTCCAGTACGAG
CAGCATCTGACGGCATCTACAGCCCAACGTCGGCGGCTCCGGTCACGTTT
GCGAGTGCCAGCGAGACAGCGGGAGGAGCGGAGAGTACAGCCATGGAGAC
CGGCAAGGTGTACGGCCTGAAGGCGCTGGCTTTCATTAACAGCAAGGTGC
GTCATGCCAAGCGCTTTCTGTACCATACTTCGTCTGGTGCTGTGGAGGTG
CTGCATGCAGTCGACGCATCATGTTGTGTTGCCTGGATTGGCATGCTGGG
TTATCGATATGGTACTTACAGTGCTTGTTGACAGCACTTGTTTGATTTAC
TTTCAGCTAGCATACTGACGCAGTAGCCAGTCGCCAAGCTACACATCATC
GTTCATGACCCCGGTGCCGCCGGGGGCGGTGTCAGAAGTTTTCATTGCAC
CTGATGTCTGTTAGCTGCACAGCTAGCTTTGTGGTCTTCATCAAAAAGCA
TTGTCTCAATGTAATCCTCCTTTAGCACAATGTGCCAACTCATCATGATC
AGTCGCTGGAGGGGAGACTGTTCAACGCACCCAACCTCAGCGCTTATTAG
TTAGCTCTAACTCCTGTCCGAGTCCCTAGGGGCCTTTCAGCTTTGGCTTG
AACGTATACAAACTGATGACTTGTTCATCGCGCACAGCGCTAGTGGCAGT
GGGTACGCAGCTCATGACGCAGCACCAAAGCGGTCCTGCTGACATCAACA
GCTTCCCTTGAAACAAGTAAGGCGCTTGTGGTGCAAGCCAGCATGCAGGC
CCATTTAGAAAAGTATGCATGCAGTCAGTTCACCAGCGCCATGTGATCTG
CAGGAAGTGCTTATGCAATGCTCCAACCTGCTTTGTTCCCTCCACAAGCC
CCAAAACCTCACATGAAAGTCAGCGGTCCCCCATGCTGCATATCATGGCC
GTACAGATTGAATCTCGCCTCAGTCGTTGCCACCTCATTCATGGCTTGAG
CGTATTTGCTAGACACACGAACACACGCGCACCCCTCGCTCATGGCTTAT
ATGCACATGTGCTACGCGAATGACACATCCGACCTCCTGCACGACTAACG
CACAGATGCTACGCGCGAGGCACACCCCCACGTCATTCACGGCATTCGTA
TGTACATACTTCTATGCTGCAACGCGTGACACCTGGCAGGCACAGCTGGC
GCCGTTCCGCATGCCTGCGGAGCTCTTCGGCCTGGGAGCCGTCAAGCCCT
TCTCGATACCCAGCGCATCGGACCTCGCAGTGCGCCTCAAGCTTAACCTC
CCGTACTACTCCACCAACTACGCCGCGCTGTACCTGGCGCTGTGCGCGAT
GAGCATCATCACCAGCCCTACGGCGCTGATCTGCCTCACGGTTACGGCGG
GGGGGTGGATCTTGCTGCTCAAGACGGCCAGCAATCCGGAGGCGGAGGGA
GTCAGGTGGGGGATGGTGTGATACTTCAAATACCTGTAGTATAATTTTTT
GAAGCAAAGGGCTTGAGTATCACAGCAATTCAGAGATGGAGGCAGTAACT
ACGCCGCGGTGTACCGGGCGCTGTGTGCGATGAGCATCATCGCCAGCCCC
ACAGCGCTGATCTGCCTGATAGTTACGGCGGGGGGGGGGATAGCGCTGCT
CAAGACGGCCAGCAACCCGGAGGCGGAGGGAGTAAGGTGGGGGGTGGTAT
GAGACTTCAAGTACTTGAAGTATGAGTATTCGAAGAAGGGGCTTGAGCAT
CACAGCAATCCGGAGACGGAGGGAGTCAGGTGTAGGGTGGTTTGATGCTT
CAAGCAGGAATATCTGAGGAAGAGGCTTGAGTATCACAGCAATACGGACA
TGGAGGGAGTAAGGTTTGGGGTGGCCTGACACTTCCAGTATGAGCATTTG
AAGAAGGGTCTTAAGAGTACCGCCATTGTGCGGGTGCGATCTTCATCCTT
GGTGTTGGTGTTGCGTCAGAGTACAGTTCTAACTAATATGCCTGTGCAAG
CATCCACAATCCTGGACGGTGCTCAACTTCAACAGGCACAACTGCAACAT
GCAAGCATCCTGGCCTCAGGCAGCACCCGACTGTGCTGATGCATGGCGGC
TTTGGCAGTGTTACTCAATTGTCGCTTTTCCCTCTGTGTTCTGCTGTCGC
AGCATCGGATCATTGACGGTGAAGAAGCAGGTGGCCTTTGTGGTGATGGG
CATCGTATCAGTGTTCGCAGGCCTGACGGTGAGCGTTGAAAACCTCTGAA
TGCCATGATTGAGAAGTAGTGTCAGTGAACCCAGTTTGTGTTTGCTGGAT
AGTCAGTGAATGGGAGTACATAGTTCAAACGCATCAGCTACTTCGTCATG
TCAAGTTATGGATTCAGTTGCTGTCGATTGTGCACCTGTCTTTCATGACA
CCTGTCATTGACCGCAGTAACGCCCGCGGCAGTCGCTCTGTTTTGCGTGT
GGGCTGGACAAAGTAAGCACATGACAAGGGCGTAGCAGTAACGACATGCA
CACATGCTCAGCGCTCAACAAGACACTGCTAGCGGCACTCTTTGGTGCTT
CCATTGCGTGTCCACGCGGCAATTGCTGCTTTGCGTTCTACGCCAGGCAG
ATGTGGTTGTCGACTGCCGTCATGCGCTGACAACAGCACCTGTGAACACA
CGCGGTGTCCTCAACATAGAGCCTGTACCTGCTTATCGAGCGTGGAATCA
TGCAACCACTTATCGTACCGTCTTGGAGCCATGCTTATAATGTGCATGAA
GCTGGCCACTTCAACACCACCATCTGACACGGCTCTCGCCCTCTCATTTT
CGTCACAGCTGTTGGGAACACTGCTAGGCTGGAGCCTCTGGCTCAGCGCC
TTTGTAGCGACAGCGCACGCGGCGGCCCGCGACGCGACAGCGCTCGCCGA
CGCCGCGGAGGCAAACGCCAACAGGCTTGAGGGCGACATTGAGCCGTTCC
TCAACGCGTAGCAGCAGAAGCAGTGCTCAGCAGCAGCAGCAGCAGTGCTC
AGCGCACGGGTGAAGCAGTGCTGCGCATTCGCAGCGCAGCGTAGCGCTGT
AGCTTGCATGCAGCACCCGGCCTGCATCTTCAACTGTGAAGTTGCCGCGC
TGTC

Coding sequence (CDS) from alignment at Contig_103:404514..407667+

>mRNA_15124 ID=mRNA_15124|Name=jgi.p|Trimin1|4528|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=672bp|location=Sequence derived from alignment at Contig_103:404514..407667+ (Tribonema minus UTEX_B_3156 )
ATGATCGAGTTGCCGAGCGCTCCAGTACGAGCAGCATCTGACGGCATCTA
CAGCCCAACGTCGGCGGCTCCGGTCACGTTTGCGAGTGCCAGCGAGACAG
CGGGAGGAGCGGAGAGTACAGCCATGGAGACCGGCAAGGTGTACGGCCTG
AAGGCGCTGGCTTTCATTAACAGCAAGGCACAGCTGGCGCCGTTCCGCAT
GCCTGCGGAGCTCTTCGGCCTGGGAGCCGTCAAGCCCTTCTCGATACCCA
GCGCATCGGACCTCGCAGTGCGCCTCAAGCTTAACCTCCCGTACTACTCC
ACCAACTACGCCGCGCTGTACCTGGCGCTGTGCGCGATGAGCATCATCAC
CAGCCCTACGGCGCTGATCTGCCTCACGGTTACGGCGGGGGGGTGGATCT
TGCTGCTCAAGACGGCCAGCAATCCGGAGGCGGAGGGAGTCAGCATCGGA
TCATTGACGGTGAAGAAGCAGGTGGCCTTTGTGGTGATGGGCATCGTATC
AGTGTTCGCAGGCCTGACGCTGTTGGGAACACTGCTAGGCTGGAGCCTCT
GGCTCAGCGCCTTTGTAGCGACAGCGCACGCGGCGGCCCGCGACGCGACA
GCGCTCGCCGACGCCGCGGAGGCAAACGCCAACAGGCTTGAGGGCGACAT
TGAGCCGTTCCTCAACGCGTAG