mRNA_15067 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|141491
Unique NamemRNA_15067
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|141491 vs. uniprot
Match: A0A835ZEG6_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEG6_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.250e-45
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1
Query:    1 FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA 216
            FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA
Sbjct:    1 FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA 72          
BLAST of jgi.p|Trimin1|141491 vs. uniprot
Match: A0A7S6UA03_9STRA (DNA-directed RNA polymerase subunit alpha n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA03_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.740e-29
Identity = 51/72 (70.83%), Postives = 63/72 (87.50%), Query Frame = 1
Query:    1 FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA 216
            FGR+K+QGPAI+TA+ + LP   EIVNP  YLATISDNSILE+EIK+DWGKGYTLA++Q +EGP+DFL ID+
Sbjct:   96 FGRLKVQGPAIVTASSLQLPQYFEIVNPYSYLATISDNSILELEIKIDWGKGYTLAKDQKIEGPVDFLAIDS 167          
BLAST of jgi.p|Trimin1|141491 vs. uniprot
Match: A0A8E5XRJ1_9PHAE (DNA-directed RNA polymerase subunit alpha n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRJ1_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 3.330e-24
Identity = 42/72 (58.33%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    1 FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA 216
            +GR+K+QGPA++TAN +DLP  VE+VNP  +L TISD+SI+E+E++L+WGK Y LAE+Q +EGP D + ID+
Sbjct:   96 WGRLKVQGPAVVTANSLDLPPEVELVNPFAHLLTISDDSIIELEVRLEWGKSYVLAEDQKIEGPSDLIPIDS 167          
BLAST of jgi.p|Trimin1|141491 vs. uniprot
Match: A0A0K2RWF9_9STRA (DNA-directed RNA polymerase subunit alpha n=1 Tax=Triparma laevis TaxID=1534972 RepID=A0A0K2RWF9_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.320e-21
Identity = 42/72 (58.33%), Postives = 56/72 (77.78%), Query Frame = 1
Query:    1 FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA 216
             GR+KIQGPA+ITA+C+ LPS +EIVNPN Y+ATIS  +ILEME++ ++G GY LA  +  E  +DFL +DA
Sbjct:   96 LGRLKIQGPAVITADCLQLPSGLEIVNPNHYIATISTTNILEMELQFEYGTGYKLAGQKMQENSVDFLEVDA 167          
BLAST of jgi.p|Trimin1|141491 vs. uniprot
Match: A0A7S4VVS7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VVS7_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.390e-21
Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    1 FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA 216
            FGR+KIQGPA+ITAN I LPS +EI+NPN Y+ATIS ++ LE+E K ++G GY LA     +   DFL+IDA
Sbjct:   50 FGRLKIQGPAVITANSIQLPSNLEIINPNHYIATISTSNCLEIEFKFEYGTGYKLAGQTFADKSDDFLQIDA 121          
BLAST of jgi.p|Trimin1|141491 vs. uniprot
Match: RPOA_PYRSA (DNA-directed RNA polymerase subunit alpha n=1 Tax=Pyrenomonas salina TaxID=3034 RepID=RPOA_PYRSA)

HSP 1 Score: 94.0 bits (232), Expect = 1.920e-21
Identity = 39/71 (54.93%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    4 GRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA 216
            GR+++QGPAI+T N ++LPS +E+++PNQY+ATI  N+ILEME +++ GKGY L E  S E  +DFL++DA
Sbjct:   97 GRLRVQGPAIVTTNHLELPSEIELIDPNQYIATICGNNILEMEFRIETGKGYNLVERDSDESSIDFLQVDA 167          
BLAST of jgi.p|Trimin1|141491 vs. uniprot
Match: Q9BAC8_FUCVE (DNA-directed RNA polymerase (Fragment) n=1 Tax=Fucus vesiculosus TaxID=49266 RepID=Q9BAC8_FUCVE)

HSP 1 Score: 91.7 bits (226), Expect = 3.290e-21
Identity = 38/72 (52.78%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA 216
            +GR+K+ GPA+ITA  ++LP+ V+I+NPN +L TISD S++E+E+K++ GK Y LA++Q +EG LDF+ ID+
Sbjct:   99 YGRLKVYGPAVITAGSLELPNNVKILNPNNHLLTISDESLIEIEVKIEAGKSYILAKDQKLEGALDFIPIDS 170          
BLAST of jgi.p|Trimin1|141491 vs. uniprot
Match: D7PJJ9_9DINO (DNA-directed RNA polymerase subunit alpha n=2 Tax=Sar TaxID=2698737 RepID=D7PJJ9_9DINO)

HSP 1 Score: 93.2 bits (230), Expect = 3.600e-21
Identity = 43/72 (59.72%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    1 FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA 216
            FGR+KIQGPA++TA+ I LPSTVEIVNPNQY+ TIS ++ILE+E K D+G GY LA    +E   ++L++DA
Sbjct:   96 FGRLKIQGPAVVTADLIQLPSTVEIVNPNQYIMTISTSNILEIEFKFDYGTGYRLASQTFLEENENYLQLDA 167          
BLAST of jgi.p|Trimin1|141491 vs. uniprot
Match: H8WG84_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Bacteriastrum hyalinum TaxID=426671 RepID=H8WG84_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 7.610e-21
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA 216
            FGR+KI+GPA+ITAN I LPS +EIVNPN Y+ATIS ++ILE+E K ++G GY LA     E   DFL+IDA
Sbjct:   96 FGRLKIKGPAVITANSIQLPSNLEIVNPNHYIATISTSNILEIEFKFEYGTGYKLAGQTFCEKSEDFLQIDA 167          
BLAST of jgi.p|Trimin1|141491 vs. uniprot
Match: A0A2U9NPJ8_9STRA (DNA-directed RNA polymerase subunit alpha n=1 Tax=Eunotogramma sp. TaxID=2219035 RepID=A0A2U9NPJ8_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 7.930e-21
Identity = 42/72 (58.33%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    1 FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA 216
            FGR+KIQGPA+ITA+ I+LPS +EIVNPN Y+ATIS +S+LE+E K ++GKGY LA     +   DF+++DA
Sbjct:  105 FGRLKIQGPAVITASSIELPSDIEIVNPNHYIATISTSSLLEIEFKFEYGKGYQLANQTFSDKSDDFIQMDA 176          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|141491 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZEG6_9STRA1.250e-45100.00DNA-directed RNA polymerase (Fragment) n=1 Tax=Tri... [more]
A0A7S6UA03_9STRA1.740e-2970.83DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]
A0A8E5XRJ1_9PHAE3.330e-2458.33DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]
A0A0K2RWF9_9STRA1.320e-2158.33DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]
A0A7S4VVS7_9STRA1.390e-2158.33Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
RPOA_PYRSA1.920e-2154.93DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]
Q9BAC8_FUCVE3.290e-2152.78DNA-directed RNA polymerase (Fragment) n=1 Tax=Fuc... [more]
D7PJJ9_9DINO3.600e-2159.72DNA-directed RNA polymerase subunit alpha n=2 Tax=... [more]
H8WG84_9STRA7.610e-2161.11DNA-directed RNA polymerase (Fragment) n=1 Tax=Bac... [more]
A0A2U9NPJ8_9STRA7.930e-2158.33DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_114contigContig_114:223467..223682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|141491|gw1.114.46.1
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
KEGG rclassRC02795
KEGG ReactionR00435,R00441,R00442,R00443
KEGG ModuleM00183
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG koko:K03040
EC2.7.7.6
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Preferred namerpoA
DescriptionDNA-directed 5'-3' RNA polymerase activity
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0202@1|root,2RZXA@2759|Eukaryota
Evalue2.63e-16
Seed ortholog2880.D1J731
Hectar predicted targeting categoryother localisation
TranscriptId141813
TrackFilteredModels1
ProteinId141491
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|141491gene_15067Tribonema minus UTEX_B_3156 geneContig_114 223467..223682 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15067_1exon_15067_1Tribonema minus UTEX_B_3156 exonContig_114 223467..223682 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15067CDS_15067Tribonema minus UTEX_B_3156 CDSContig_114 223467..223682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|141491Trimin1|141491|gw1.114.46.1Tribonema minus UTEX_B_3156 polypeptideContig_114 223467..223682 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15067 ID=mRNA_15067|Name=jgi.p|Trimin1|141491|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=216bp|location=Sequence derived from alignment at Contig_114:223467..223682- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTTGGACGAGTAAAAATTCAAGGGCCTGCAATTATTACTGCAAATTGTAT
TGATTTACCATCAACTGTGGAAATAGTTAATCCAAATCAATATCTTGCAA
CAATTTCTGATAATTCGATCTTAGAAATGGAAATAAAACTAGATTGGGGA
AAAGGCTATACATTAGCAGAAAATCAATCGGTAGAGGGCCCTTTAGATTT
TTTAAGGATCGATGCT
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protein sequence of jgi.p|Trimin1|141491

>Trimin1|141491|gw1.114.46.1 ID=Trimin1|141491|gw1.114.46.1|Name=jgi.p|Trimin1|141491|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=72bp
FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWG
KGYTLAENQSVEGPLDFLRIDA
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mRNA from alignment at Contig_114:223467..223682-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15067 ID=mRNA_15067|Name=jgi.p|Trimin1|141491|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=216bp|location=Sequence derived from alignment at Contig_114:223467..223682- (Tribonema minus UTEX_B_3156 )
TTTGGACGAGTAAAAATTCAAGGGCCTGCAATTATTACTGCAAATTGTAT TGATTTACCATCAACTGTGGAAATAGTTAATCCAAATCAATATCTTGCAA CAATTTCTGATAATTCGATCTTAGAAATGGAAATAAAACTAGATTGGGGA AAAGGCTATACATTAGCAGAAAATCAATCGGTAGAGGGCCCTTTAGATTT TTTAAGGATCGATGCT
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Coding sequence (CDS) from alignment at Contig_114:223467..223682-

>mRNA_15067 ID=mRNA_15067|Name=jgi.p|Trimin1|141491|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=216bp|location=Sequence derived from alignment at Contig_114:223467..223682- (Tribonema minus UTEX_B_3156 )
TTTGGACGAGTAAAAATTCAAGGGCCTGCAATTATTACTGCAAATTGTAT
TGATTTACCATCAACTGTGGAAATAGTTAATCCAAATCAATATCTTGCAA
CAATTTCTGATAATTCGATCTTAGAAATGGAAATAAAACTAGATTGGGGA
AAAGGCTATACATTAGCAGAAAATCAATCGGTAGAGGGCCCTTTAGATTT
TTTAAGGATCGATGCT
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