mRNA_15067 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|141491 vs. uniprot
Match: A0A835ZEG6_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEG6_9STRA) HSP 1 Score: 149 bits (375), Expect = 1.250e-45 Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1
Query: 1 FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA 216
FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA
Sbjct: 1 FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA 72
BLAST of jgi.p|Trimin1|141491 vs. uniprot
Match: A0A7S6UA03_9STRA (DNA-directed RNA polymerase subunit alpha n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA03_9STRA) HSP 1 Score: 115 bits (287), Expect = 1.740e-29 Identity = 51/72 (70.83%), Postives = 63/72 (87.50%), Query Frame = 1
Query: 1 FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA 216
FGR+K+QGPAI+TA+ + LP EIVNP YLATISDNSILE+EIK+DWGKGYTLA++Q +EGP+DFL ID+
Sbjct: 96 FGRLKVQGPAIVTASSLQLPQYFEIVNPYSYLATISDNSILELEIKIDWGKGYTLAKDQKIEGPVDFLAIDS 167
BLAST of jgi.p|Trimin1|141491 vs. uniprot
Match: A0A8E5XRJ1_9PHAE (DNA-directed RNA polymerase subunit alpha n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRJ1_9PHAE) HSP 1 Score: 101 bits (251), Expect = 3.330e-24 Identity = 42/72 (58.33%), Postives = 60/72 (83.33%), Query Frame = 1
Query: 1 FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA 216
+GR+K+QGPA++TAN +DLP VE+VNP +L TISD+SI+E+E++L+WGK Y LAE+Q +EGP D + ID+
Sbjct: 96 WGRLKVQGPAVVTANSLDLPPEVELVNPFAHLLTISDDSIIELEVRLEWGKSYVLAEDQKIEGPSDLIPIDS 167
BLAST of jgi.p|Trimin1|141491 vs. uniprot
Match: A0A0K2RWF9_9STRA (DNA-directed RNA polymerase subunit alpha n=1 Tax=Triparma laevis TaxID=1534972 RepID=A0A0K2RWF9_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 1.320e-21 Identity = 42/72 (58.33%), Postives = 56/72 (77.78%), Query Frame = 1
Query: 1 FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA 216
GR+KIQGPA+ITA+C+ LPS +EIVNPN Y+ATIS +ILEME++ ++G GY LA + E +DFL +DA
Sbjct: 96 LGRLKIQGPAVITADCLQLPSGLEIVNPNHYIATISTTNILEMELQFEYGTGYKLAGQKMQENSVDFLEVDA 167
BLAST of jgi.p|Trimin1|141491 vs. uniprot
Match: A0A7S4VVS7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VVS7_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 1.390e-21 Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 1
Query: 1 FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA 216
FGR+KIQGPA+ITAN I LPS +EI+NPN Y+ATIS ++ LE+E K ++G GY LA + DFL+IDA
Sbjct: 50 FGRLKIQGPAVITANSIQLPSNLEIINPNHYIATISTSNCLEIEFKFEYGTGYKLAGQTFADKSDDFLQIDA 121
BLAST of jgi.p|Trimin1|141491 vs. uniprot
Match: RPOA_PYRSA (DNA-directed RNA polymerase subunit alpha n=1 Tax=Pyrenomonas salina TaxID=3034 RepID=RPOA_PYRSA) HSP 1 Score: 94.0 bits (232), Expect = 1.920e-21 Identity = 39/71 (54.93%), Postives = 57/71 (80.28%), Query Frame = 1
Query: 4 GRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA 216
GR+++QGPAI+T N ++LPS +E+++PNQY+ATI N+ILEME +++ GKGY L E S E +DFL++DA
Sbjct: 97 GRLRVQGPAIVTTNHLELPSEIELIDPNQYIATICGNNILEMEFRIETGKGYNLVERDSDESSIDFLQVDA 167
BLAST of jgi.p|Trimin1|141491 vs. uniprot
Match: Q9BAC8_FUCVE (DNA-directed RNA polymerase (Fragment) n=1 Tax=Fucus vesiculosus TaxID=49266 RepID=Q9BAC8_FUCVE) HSP 1 Score: 91.7 bits (226), Expect = 3.290e-21 Identity = 38/72 (52.78%), Postives = 59/72 (81.94%), Query Frame = 1
Query: 1 FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA 216
+GR+K+ GPA+ITA ++LP+ V+I+NPN +L TISD S++E+E+K++ GK Y LA++Q +EG LDF+ ID+
Sbjct: 99 YGRLKVYGPAVITAGSLELPNNVKILNPNNHLLTISDESLIEIEVKIEAGKSYILAKDQKLEGALDFIPIDS 170
BLAST of jgi.p|Trimin1|141491 vs. uniprot
Match: D7PJJ9_9DINO (DNA-directed RNA polymerase subunit alpha n=2 Tax=Sar TaxID=2698737 RepID=D7PJJ9_9DINO) HSP 1 Score: 93.2 bits (230), Expect = 3.600e-21 Identity = 43/72 (59.72%), Postives = 57/72 (79.17%), Query Frame = 1
Query: 1 FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA 216
FGR+KIQGPA++TA+ I LPSTVEIVNPNQY+ TIS ++ILE+E K D+G GY LA +E ++L++DA
Sbjct: 96 FGRLKIQGPAVVTADLIQLPSTVEIVNPNQYIMTISTSNILEIEFKFDYGTGYRLASQTFLEENENYLQLDA 167
BLAST of jgi.p|Trimin1|141491 vs. uniprot
Match: H8WG84_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Bacteriastrum hyalinum TaxID=426671 RepID=H8WG84_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 7.610e-21 Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 1
Query: 1 FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA 216
FGR+KI+GPA+ITAN I LPS +EIVNPN Y+ATIS ++ILE+E K ++G GY LA E DFL+IDA
Sbjct: 96 FGRLKIKGPAVITANSIQLPSNLEIVNPNHYIATISTSNILEIEFKFEYGTGYKLAGQTFCEKSEDFLQIDA 167
BLAST of jgi.p|Trimin1|141491 vs. uniprot
Match: A0A2U9NPJ8_9STRA (DNA-directed RNA polymerase subunit alpha n=1 Tax=Eunotogramma sp. TaxID=2219035 RepID=A0A2U9NPJ8_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 7.930e-21 Identity = 42/72 (58.33%), Postives = 57/72 (79.17%), Query Frame = 1
Query: 1 FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGKGYTLAENQSVEGPLDFLRIDA 216
FGR+KIQGPA+ITA+ I+LPS +EIVNPN Y+ATIS +S+LE+E K ++GKGY LA + DF+++DA
Sbjct: 105 FGRLKIQGPAVITASSIELPSDIEIVNPNHYIATISTSSLLEIEFKFEYGKGYQLANQTFSDKSDDFIQMDA 176 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|141491 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15067 ID=mRNA_15067|Name=jgi.p|Trimin1|141491|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=216bp|location=Sequence derived from alignment at Contig_114:223467..223682- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TTTGGACGAGTAAAAATTCAAGGGCCTGCAATTATTACTGCAAATTGTATback to top protein sequence of jgi.p|Trimin1|141491 >Trimin1|141491|gw1.114.46.1 ID=Trimin1|141491|gw1.114.46.1|Name=jgi.p|Trimin1|141491|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=72bp FGRVKIQGPAIITANCIDLPSTVEIVNPNQYLATISDNSILEMEIKLDWGback to top mRNA from alignment at Contig_114:223467..223682- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15067 ID=mRNA_15067|Name=jgi.p|Trimin1|141491|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=216bp|location=Sequence derived from alignment at Contig_114:223467..223682- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_114:223467..223682- >mRNA_15067 ID=mRNA_15067|Name=jgi.p|Trimin1|141491|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=216bp|location=Sequence derived from alignment at Contig_114:223467..223682- (Tribonema minus UTEX_B_3156 )back to top |