mRNA_15066 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|9526
Unique NamemRNA_15066
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|9526 vs. uniprot
Match: PSBH_NEOYE (Photosystem II reaction center protein H n=202 Tax=Rhodophyta TaxID=2763 RepID=PSBH_NEOYE)

HSP 1 Score: 127 bits (319), Expect = 2.740e-36
Identity = 60/67 (89.55%), Postives = 66/67 (98.51%), Query Frame = 2 
Query:  122 MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQIYNSSLIIENVDVDWQTIGN 322
            MALRTRLGE+LRPLNSEYGKVAPGWGTTPIMGIFMLLFF+FLLIILQIYNSSL++ENVDVDW T+G+
Sbjct:    1 MALRTRLGEILRPLNSEYGKVAPGWGTTPIMGIFMLLFFLFLLIILQIYNSSLVLENVDVDWATLGS 67
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BLAST of jgi.p|Trimin1|9526 vs. uniprot
Match: A0A7S6UA07_9STRA (Photosystem II reaction center protein H n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA07_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.580e-35
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 2 
Query:  122 MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQIYNSSLIIENVDVDWQTIG 319
            M LRTRLGE+L PLNSEYGKVAPGWGTTPIMG+FMLLFF+FLLIILQIYNSSLIIENVDVDWQ++G
Sbjct:    1 MTLRTRLGEILSPLNSEYGKVAPGWGTTPIMGVFMLLFFIFLLIILQIYNSSLIIENVDVDWQSLG 66
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BLAST of jgi.p|Trimin1|9526 vs. uniprot
Match: UPI001BF0BE92 (photosystem II protein H n=1 Tax=Pseudoerythrocladia kornmannii TaxID=753682 RepID=UPI001BF0BE92)

HSP 1 Score: 124 bits (311), Expect = 4.530e-35
Identity = 58/67 (86.57%), Postives = 65/67 (97.01%), Query Frame = 2 
Query:  122 MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQIYNSSLIIENVDVDWQTIGN 322
            M LRTRLGE+LRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQ+YNSSLI++NVDVDW ++G+
Sbjct:    1 MTLRTRLGEILRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQVYNSSLILDNVDVDWASLGS 67
[Close]
BLAST of jgi.p|Trimin1|9526 vs. uniprot
Match: A0A222AHJ9_9CRYP (Photosystem II reaction center protein H n=3 Tax=Cryptophyceae TaxID=3027 RepID=A0A222AHJ9_9CRYP)

HSP 1 Score: 123 bits (309), Expect = 9.140e-35
Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = 2 
Query:  122 MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQIYNSSLIIENVDVDWQTIGN 322
            MALRTRLGELLRPLNSEYGKV+PGWGTTPIMG  MLLFFVFLLIILQIYNSSLIIENVDVDW ++G+
Sbjct:    1 MALRTRLGELLRPLNSEYGKVSPGWGTTPIMGFVMLLFFVFLLIILQIYNSSLIIENVDVDWASLGS 67
[Close]
BLAST of jgi.p|Trimin1|9526 vs. uniprot
Match: PSBH_GUITH (Photosystem II reaction center protein H n=15 Tax=Eukaryota TaxID=2759 RepID=PSBH_GUITH)

HSP 1 Score: 122 bits (307), Expect = 1.840e-34
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 2 
Query:  122 MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQIYNSSLIIENVDVDWQTIGN 322
            MALRTRLGELLRPLNSEYGKVAPGWGTTP MG  MLLFF+FLLIILQIYNSSLI+ENVDVDW ++GN
Sbjct:    1 MALRTRLGELLRPLNSEYGKVAPGWGTTPAMGFVMLLFFLFLLIILQIYNSSLILENVDVDWASLGN 67
[Close]
BLAST of jgi.p|Trimin1|9526 vs. uniprot
Match: A6MW35_RHDSA (Photosystem II reaction center protein H n=5 Tax=Eukaryota TaxID=2759 RepID=A6MW35_RHDSA)

HSP 1 Score: 121 bits (304), Expect = 5.270e-34
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 2 
Query:  122 MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQIYNSSLIIENVDVDWQTIGN 322
            MALRTRLGELLRPLNSEYGKVAPGWGTTPIMG  MLLF VFLLIILQIYNSSLIIENVDVDW ++G+
Sbjct:    1 MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGFVMLLFAVFLLIILQIYNSSLIIENVDVDWASLGS 67
[Close]
BLAST of jgi.p|Trimin1|9526 vs. uniprot
Match: UPI001FCDC0D8 (photosystem II protein H n=1 Tax=Glaucosphaera vacuolata TaxID=38265 RepID=UPI001FCDC0D8)

HSP 1 Score: 120 bits (302), Expect = 1.250e-33
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 2 
Query:  122 MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQIYNSSLIIENVDVDWQTIGN 322
            MALRTRLGE+LRPLNSEYGKVAPGWGTTP+MG FMLLFF+FLLIILQIYNSSLI+ENVDVDW    N
Sbjct:    1 MALRTRLGEILRPLNSEYGKVAPGWGTTPLMGFFMLLFFLFLLIILQIYNSSLILENVDVDWVRFKN 67
[Close]
BLAST of jgi.p|Trimin1|9526 vs. uniprot
Match: A0A6P0TDP4_9CYAN (Photosystem II reaction center protein H n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A6P0TDP4_9CYAN)

HSP 1 Score: 120 bits (301), Expect = 1.510e-33
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 2 
Query:  122 MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQIYNSSLIIENVDVDWQTIG 319
            MA RTRLG LLRPLNSEYGKVAPGWGTTP+MG+FMLLFFVFLLIILQIYNSSLI+E +DVDW T+G
Sbjct:    1 MAQRTRLGNLLRPLNSEYGKVAPGWGTTPLMGVFMLLFFVFLLIILQIYNSSLILEGLDVDWTTLG 66
[Close]
BLAST of jgi.p|Trimin1|9526 vs. uniprot
Match: A0A7R6WDZ1_9EUKA (Photosystem II reaction center protein H n=1 Tax=Haptophyceae sp. NIES-3900 TaxID=2748608 RepID=A0A7R6WDZ1_9EUKA)

HSP 1 Score: 120 bits (300), Expect = 2.140e-33
Identity = 57/67 (85.07%), Postives = 64/67 (95.52%), Query Frame = 2 
Query:  122 MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQIYNSSLIIENVDVDWQTIGN 322
            MALRTRLGE+L+PLNSEYGKVAPGWGTT +M IFMLLFF+FLLIILQIYNSSLIIENVDVDW ++G+
Sbjct:    1 MALRTRLGEILKPLNSEYGKVAPGWGTTVVMAIFMLLFFLFLLIILQIYNSSLIIENVDVDWASVGS 67
[Close]
BLAST of jgi.p|Trimin1|9526 vs. uniprot
Match: A0A8J6ULV8_9CYAN (Photosystem II reaction center protein H n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A8J6ULV8_9CYAN)

HSP 1 Score: 118 bits (295), Expect = 1.240e-32
Identity = 54/66 (81.82%), Postives = 64/66 (96.97%), Query Frame = 2 
Query:  122 MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQIYNSSLIIENVDVDWQTIG 319
            MA RT LG++L+PLNSEYGKVAPGWGTTP+MG+FMLLFFVFLLIILQ+YNSSL+IENVDVDW+++G
Sbjct:    1 MAQRTWLGDVLKPLNSEYGKVAPGWGTTPLMGVFMLLFFVFLLIILQVYNSSLLIENVDVDWRSLG 66
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|9526 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PSBH_NEOYE2.740e-3689.55Photosystem II reaction center protein H n=202 Tax... [more]
A0A7S6UA07_9STRA1.580e-3589.39Photosystem II reaction center protein H n=1 Tax=S... [more]
UPI001BF0BE924.530e-3586.57photosystem II protein H n=1 Tax=Pseudoerythroclad... [more]
A0A222AHJ9_9CRYP9.140e-3589.55Photosystem II reaction center protein H n=3 Tax=C... [more]
PSBH_GUITH1.840e-3488.06Photosystem II reaction center protein H n=15 Tax=... [more]
A6MW35_RHDSA5.270e-3489.55Photosystem II reaction center protein H n=5 Tax=E... [more]
UPI001FCDC0D81.250e-3386.57photosystem II protein H n=1 Tax=Glaucosphaera vac... [more]
A0A6P0TDP4_9CYAN1.510e-3386.36Photosystem II reaction center protein H n=2 Tax=O... [more]
A0A7R6WDZ1_9EUKA2.140e-3385.07Photosystem II reaction center protein H n=1 Tax=H... [more]
A0A8J6ULV8_9CYAN1.240e-3281.82Photosystem II reaction center protein H n=4 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_114contigContig_114:223170..223534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|9526|CE9525_18
BRITEko00000,ko00001,ko00194
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG koko:K02709
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009521,GO:0009523,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009654,GO:0016020,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0098796,GO:1902494,GO:1990204
Preferred namepsbH
Descriptionphosphate ion binding
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2E1MV@1|root,2S8Y7@2759|Eukaryota
Evalue2.1e-35
Seed ortholog55529.AAC35736
Hectar predicted targeting categorysignal anchor
TranscriptId9848
TrackFilteredModels1
ProteinId9526
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|9526gene_15066Tribonema minus UTEX_B_3156 geneContig_114 223170..223534 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15066_1exon_15066_1Tribonema minus UTEX_B_3156 exonContig_114 223170..223534 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15066UTR3_15066Tribonema minus UTEX_B_3156 three_prime_UTRContig_114 223170..223209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15066CDS_15066Tribonema minus UTEX_B_3156 CDSContig_114 223210..223413 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_15066UTR5_15066Tribonema minus UTEX_B_3156 five_prime_UTRContig_114 223414..223534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|9526Trimin1|9526|CE9525_18Tribonema minus UTEX_B_3156 polypeptideContig_114 223210..223413 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15066 ID=mRNA_15066|Name=jgi.p|Trimin1|9526|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=365bp|location=Sequence derived from alignment at Contig_114:223170..223534- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAAAAGGCTATACATTAGCAGAAAATCAATCGGTAGAGGGCCCTTTAGAT
TTTTTAAGGATCGATGCTAATGTTTTTATACTGACAAAAATACTTGTTAC
TTACTTAAATTATATTAAATTATGGCTTTAAGAACTAGACTTGGGGAACT
TCTACGACCTTTAAATTCTGAATATGGAAAAGTTGCTCCTGGTTGGGGTA
CTACTCCCATTATGGGCATCTTTATGTTACTATTTTTTGTTTTCTTATTA
ATCATCCTACAAATTTATAATTCATCACTTATTATTGAGAATGTTGACGT
AGATTGGCAAACTATTGGTAATTAAGTTTTTACCTGCGACTTTGCTTAGA
CAAAACGTTTAGCCT
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protein sequence of jgi.p|Trimin1|9526

>Trimin1|9526|CE9525_18 ID=Trimin1|9526|CE9525_18|Name=jgi.p|Trimin1|9526|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=68bp
MALRTRLGELLRPLNSEYGKVAPGWGTTPIMGIFMLLFFVFLLIILQIYN
SSLIIENVDVDWQTIGN*
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mRNA from alignment at Contig_114:223170..223534-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15066 ID=mRNA_15066|Name=jgi.p|Trimin1|9526|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=365bp|location=Sequence derived from alignment at Contig_114:223170..223534- (Tribonema minus UTEX_B_3156 )
GAAAAGGCTATACATTAGCAGAAAATCAATCGGTAGAGGGCCCTTTAGAT
TTTTTAAGGATCGATGCTAATGTTTTTATACTGACAAAAATACTTGTTAC
TTACTTAAATTATATTAAATTATGGCTTTAAGAACTAGACTTGGGGAACT
TCTACGACCTTTAAATTCTGAATATGGAAAAGTTGCTCCTGGTTGGGGTA
CTACTCCCATTATGGGCATCTTTATGTTACTATTTTTTGTTTTCTTATTA
ATCATCCTACAAATTTATAATTCATCACTTATTATTGAGAATGTTGACGT
AGATTGGCAAACTATTGGTAATTAAGTTTTTACCTGCGACTTTGCTTAGA
CAAAACGTTTAGCCT
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Coding sequence (CDS) from alignment at Contig_114:223170..223534-

>mRNA_15066 ID=mRNA_15066|Name=jgi.p|Trimin1|9526|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=204bp|location=Sequence derived from alignment at Contig_114:223170..223534- (Tribonema minus UTEX_B_3156 )
ATGGCTTTAAGAACTAGACTTGGGGAACTTCTACGACCTTTAAATTCTGA
ATATGGAAAAGTTGCTCCTGGTTGGGGTACTACTCCCATTATGGGCATCT
TTATGTTACTATTTTTTGTTTTCTTATTAATCATCCTACAAATTTATAAT
TCATCACTTATTATTGAGAATGTTGACGTAGATTGGCAAACTATTGGTAA
TTAA
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